Nucleic Acids Research

Editorial:

Editorial
Nucl. Acids Res. 1999 27: 0; doi:10.1093/nar/27.2.0 [Print PDF] [Request Permissions]  

Reviews:

DE Draper and LP Reynaldo

RNA binding strategies of ribosomal proteins
Nucl. Acids Res. 1999 27: 381-388; doi:10.1093/nar/27.2.381 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Articles:

D Chen, Z Yan, DL Cole, and GS Srivatsa

Analysis of internal (n-1)mer deletion sequences in synthetic oligodeoxyribonucleotides by hybridization to an immobilized probe array
Nucl. Acids Res. 1999 27: 389-395; doi:10.1093/nar/27.2.389 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

P Stolt, Q Zhang, and S Ehlers

Identification of promoter elements in mycobacteria: mutational analysis of a highly symmetric dual promoter directing the expression of replication genes of the Mycobacterium plasmid pAL5000
Nucl. Acids Res. 1999 27: 396-402; doi:10.1093/nar/27.2.396 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

F Nishikawa, M Roy, H Fauzi, and S Nishikawa

Detailed analysis of stem I and its 5' and 3' neighbor regions in the trans-acting HDV ribozyme
Nucl. Acids Res. 1999 27: 403-410; doi:10.1093/nar/27.2.403 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

P Lau, P Bailey, DH Dowhan, and GE Muscat

Exogenous expression of a dominant negative RORalpha1 vector in muscle cells impairs differentiation: RORalpha1 directly interacts with p300 and myoD
Nucl. Acids Res. 1999 27: 411-420; doi:10.1093/nar/27.2.411 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

D Prufer, L Kawchuk, M Monecke2, S Nowok, R Fischer, and W Rohde

Immunological analysis of potato leafroll luteovirus (PLRV) P1 expression identifies a 25 kDa RNA-binding protein derived via P1 processing
Nucl. Acids Res. 1999 27: 421-425; doi:10.1093/nar/27.2.421 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

C Piechaczek, C Fetzer, A Baiker, J Bode, and HJ Lipps

A vector based on the SV40 origin of replication and chromosomal S/MARs replicates episomally in CHO cells
Nucl. Acids Res. 1999 27: 426-428; doi:10.1093/nar/27.2.426 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

C Phillips, CB Kyriakopoulou, and A Virtanen

Identification of a stem-loop structure important for polyadenylation at the murine IgM secretory poly(A) site
Nucl. Acids Res. 1999 27: 429-438; doi:10.1093/nar/27.2.429 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

B Dong and RH Silverman

Alternative function of a protein kinase homology domain in 2', 5'- oligoadenylate dependent RNase L
Nucl. Acids Res. 1999 27: 439-445; doi:10.1093/nar/27.2.439 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

BI Klasens, M Thiesen, A Virtanen, and B Berkhout

The ability of the HIV-1 AAUAAA signal to bind polyadenylation factors is controlled by local RNA structure
Nucl. Acids Res. 1999 27: 446-454; doi:10.1093/nar/27.2.446 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

H Wang, E Hartswood, and DJ Finnegan

Pogo transposase contains a putative helix-turn-helix DNA binding domain that recognises a 12 bp sequence within the terminal inverted repeats
Nucl. Acids Res. 1999 27: 455-461; doi:10.1093/nar/27.2.455 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

N Reynolds, PA Fantes, and SA MacNeill

A key role for replication factor C in DNA replication checkpoint function in fission yeast
Nucl. Acids Res. 1999 27: 462-469; doi:10.1093/nar/27.2.462 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Y Kagaya, K Ohmiya, and T Hattori

RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants
Nucl. Acids Res. 1999 27: 470-478; doi:10.1093/nar/27.2.470 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

EC Scott and OC Uhlenbeck

A re-investigation of the thio effect at the hammerhead cleavage site
Nucl. Acids Res. 1999 27: 479-484; doi:10.1093/nar/27.2.479 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

J Wang, JM Bakkers, JM Galama, HJ Bruins Slot, EV Pilipenko, VI Agol, and WJ Melchers

Structural requirements of the higher order RNA kissing element in the enteroviral 3'UTR
Nucl. Acids Res. 1999 27: 485-490; doi:10.1093/nar/27.2.485 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

M Hofferer, C Wirbelauer, B Humar, and W Krek

Increased levels of E2F-1-dependent DNA binding activity after UV- or gamma-irradiation
Nucl. Acids Res. 1999 27: 491-495; doi:10.1093/nar/27.2.491 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

V Duarte, JG Muller, and CJ Burrows

Insertion of dGMP and dAMP during in vitro DNA synthesis opposite an oxidized form of 7,8-dihydro-8-oxoguanine
Nucl. Acids Res. 1999 27: 496-502; doi:10.1093/nar/27.2.496 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

I Michalopoulos and RT Hay

Role of the conserved lysine 80 in stabilisation of NF-kappaB p50 DNA binding
Nucl. Acids Res. 1999 27: 503-509; doi:10.1093/nar/27.2.503 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Y Takahashi, F Hirose, A Matsukage, and M Yamaguchi

Identification of three conserved regions in the DREF transcription factors from Drosophila melanogaster and Drosophila virilis
Nucl. Acids Res. 1999 27: 510-516; doi:10.1093/nar/27.2.510 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

P Blomquist, S Belikov, and O Wrange

Increased nuclear factor 1 binding to its nucleosomal site mediated by sequence-dependent DNA structure
Nucl. Acids Res. 1999 27: 517-525; doi:10.1093/nar/27.2.517 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Z Trachtulec and J Forejt

Transcription and RNA processing of mammalian genes in Saccharomyces cerevisiae
Nucl. Acids Res. 1999 27: 526-531; doi:10.1093/nar/27.2.526 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

KA Bailey, CS Chow, and JN Reeve

Histone stoichiometry and DNA circularization in archaeal nucleosomes
Nucl. Acids Res. 1999 27: 532-536; doi:10.1093/nar/27.2.532 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

H Han, LH Hurley, and M Salazar

A DNA polymerase stop assay for G-quadruplex-interactive compounds
Nucl. Acids Res. 1999 27: 537-542; doi:10.1093/nar/27.2.537 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

BF Eichman, GP Schroth, BE Basham, and PS Ho

The intrinsic structure and stability of out-of-alternation base pairs in Z-DNA
Nucl. Acids Res. 1999 27: 543-550; doi:10.1093/nar/27.2.543 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

L Bastide, PE Boehmer, G Villani, and B Lebleu

Inhibition of a DNA-helicase by peptide nucleic acids
Nucl. Acids Res. 1999 27: 551-554; doi:10.1093/nar/27.2.551 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

GL Conn, T Brown, and GA Leonard

The crystal structure of the RNA/DNA hybrid r(GAAGAGAAGC). d(GCTTCTCTTC) shows significant differences to that found in solution
Nucl. Acids Res. 1999 27: 555-561; doi:10.1093/nar/27.2.555 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

A Venkatesan, S Das, and A Dasgupta

Structure and function of a small RNA that selectively inhibits internal ribosome entry site-mediated translation
Nucl. Acids Res. 1999 27: 562-572; doi:10.1093/nar/27.2.562 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

G Benson

Tandem repeats finder: a program to analyze DNA sequences
Nucl. Acids Res. 1999 27: 573-580; doi:10.1093/nar/27.2.573 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

M Vorlickova, I Kejnovska, J Kovanda, and J Kypr

Dimerization of the guanine-adenine repeat strands of DNA
Nucl. Acids Res. 1999 27: 581-586; doi:10.1093/nar/27.2.581 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

RL Seipelt, B Zheng, A Asuru, and BC Rymond

U1 snRNA is cleaved by RNase III and processed through an Sm site- dependent pathway
Nucl. Acids Res. 1999 27: 587-595; doi:10.1093/nar/27.2.587 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

E Biet, J Sun, and M Dutreix

Conserved sequence preference in DNA binding among recombination proteins: an effect of ssDNA secondary structure
Nucl. Acids Res. 1999 27: 596-600; doi:10.1093/nar/27.2.596 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

MC Imbert, VK Nguyen, S Granjeaud, C Nguyen, and BR Jordan

'LABNOTE', a laboratory notebook system designed for academic genomics groups
Nucl. Acids Res. 1999 27: 601-607; doi:10.1093/nar/27.2.601 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

B Castaing, JL Fourrey, N Hervouet, M Thomas, S Boiteux, and C Zelwer

AP site structural determinants for Fpg specific recognition
Nucl. Acids Res. 1999 27: 608-615; doi:10.1093/nar/27.2.608 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

P Parniewski, A Bacolla, A Jaworski, and RD Wells

Nucleotide excision repair affects the stability of long transcribed (CTG*CAG) tracts in an orientation-dependent manner in Escherichia coli
Nucl. Acids Res. 1999 27: 616-623; doi:10.1093/nar/27.2.616 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

J Selvasekaran and KD Turnbull

Chemical ligation of oligodeoxyribonucleotides on circular DNA templates
Nucl. Acids Res. 1999 27: 624-627; doi:10.1093/nar/27.2.624 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

S Aubourg, M Kreis, and A Lecharny

The DEAD box RNA helicase family in Arabidopsis thaliana
Nucl. Acids Res. 1999 27: 628-636; doi:10.1093/nar/27.2.628 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

D Ammons, J Rampersad, and GE Fox

5S rRNA gene deletions cause an unexpectedly high fitness loss in Escherichia coli
Nucl. Acids Res. 1999 27: 637-642; doi:10.1093/nar/27.2.637 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

C Bachmeyer, CH Mak, CY Yu, and LC Wu

Regulation by phosphorylation of the zinc finger protein KRC that binds the kappaB motif and V(D)J recombination signal sequences
Nucl. Acids Res. 1999 27: 643-648; doi:10.1093/nar/27.2.643 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

FN Rehman, M Audeh, ES Abrams, PW Hammond, M Kenney, and TC Boles

Immobilization of acrylamide-modified oligonucleotides by co- polymerization
Nucl. Acids Res. 1999 27: 649-655; doi:10.1093/nar/27.2.649 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

AP Walther, MP Bjerke, and MS Wold

A novel assay for examining the molecular reactions at the eukaryotic replication fork: activities of replication protein A required during elongation
Nucl. Acids Res. 1999 27: 656-664; doi:10.1093/nar/27.2.656 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

CC Hardin, JL Sneeden, SM Lemon, BA Brown II, RH Guenther, and H Sierzputowska- Gracz

Folding of pyrimidine-enriched RNA fragments from the vicinity of the internal ribosomal entry site of hepatitis A virus
Nucl. Acids Res. 1999 27: 665-673; doi:10.1093/nar/27.2.665 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

J Smith, JM Berg, and S Chandrasegaran

A detailed study of the substrate specificity of a chimeric restriction enzyme
Nucl. Acids Res. 1999 27: 674-681; doi:10.1093/nar/27.2.674 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

MJ Parkinson, JR Pohler, and DM Lilley

Catalytic and binding mutants of the junction-resolving enzyme endonuclease I of bacteriophage t7: role of acidic residues
Nucl. Acids Res. 1999 27: 682-689; doi:10.1093/nar/27.2.682 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

MR Sturges, M Bartilson, and LJ Peck

Enhancer of RNA polymerase III gene transcription
Nucl. Acids Res. 1999 27: 690-694; doi:10.1093/nar/27.2.690 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

SW Blume, J Lebowitz, W Zacharias, V Guarcello, CA Mayfield, SW Ebbinghaus, P Bates, DE Jones Jr, J Trent, N Vigneswaran, and DM Miller

The integral divalent cation within the intermolecular purine*purine. pyrimidine structure: a variable determinant of the potential for and characteristics of the triple helical association
Nucl. Acids Res. 1999 27: 695-702; doi:10.1093/nar/27.2.695 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

A Guerasimova, I Ivanov, and H Lehrach

A method of one-step enzyme labelling of short oligonucleotide probes for filter hybridisation
Nucl. Acids Res. 1999 27: 703-705; doi:10.1093/nar/27.2.703 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

B Fehse, K K hlcke, A Langer, W Ostertag, and H Lother

Rapid and efficient cloning of proviral flanking fragments by kanamycin resistance gene complementation
Nucl. Acids Res. 1999 27: 706-707; doi:10.1093/nar/27.2.706 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

K Forster, V Helbl, T Lederer, S Urlinger, N Wittenburg, and W Hillen

Tetracycline-inducible expression systems with reduced basal activity in mammalian cells
Nucl. Acids Res. 1999 27: 708-710; doi:10.1093/nar/27.2.708 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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