Nucleic Acids Research

Announcement:

Nucl. Acids Res. 2000 28: 0; doi:10.1093/nar/28.2.0 [Print PDF] [Request Permissions]  

Articles:

David R. Stanford, Nancy C. Martin, and Anita K. Hopper

SURVEY AND SUMMARY: ADEPTs: information necessary for subcellular distribution of eukaryotic sorting isozymes resides in domains missing from eubacterial and archaeal counterparts
Nucl. Acids Res. 2000 28: 383-392; doi:10.1093/nar/28.2.383 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Jane E. A. Wibley, Anthony E. Pegg, and Peter C. E. Moody

Crystal structure of the human O⁶-alkylguanine-DNA alkyltransferase
Nucl. Acids Res. 2000 28: 393-401; doi:10.1093/nar/28.2.393 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Shern L. Chew, Lysa Baginsky, and Ian C. Eperon

An exonic splicing silencer in the testes-specific DNA ligase III ß exon
Nucl. Acids Res. 2000 28: 402-410; doi:10.1093/nar/28.2.402 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Thierry Tchénio, Jean-François Casella, and Thierry Heidmann

Members of the SRY family regulate the human LINE retrotransposons
Nucl. Acids Res. 2000 28: 411-415; doi:10.1093/nar/28.2.411 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Vienna Reichert and Melissa J. Moore

Better conditions for mammalian in vitro splicing provided by acetate and glutamate as potassium counterions
Nucl. Acids Res. 2000 28: 416-423; doi:10.1093/nar/28.2.416 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Geoffrey S. C. Dance, Mark P. Sowden, Yan Yang, and Harold C. Smith

APOBEC-1 dependent cytidine to uridine editing of apolipoprotein B RNA in yeast
Nucl. Acids Res. 2000 28: 424-429; doi:10.1093/nar/28.2.424 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jörn Lausen, Heike Thomas, Ira Lemm, Michael Bulman, Michael Borgschulze, Anja Lingott, Andrew T. Hattersley, and Gerhart U. Ryffel

Naturally occurring mutations in the human HNF4 gene impair the function of the transcription factor to a varying degree
Nucl. Acids Res. 2000 28: 430-437; doi:10.1093/nar/28.2.430 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Karine Aupeix-Scheidler, Sandrine Chabas, Laure Bidou, Jean-Pierre Rousset, Marc Leng, and Jean-Jacques Toulmé

Inhibition of in vitro and ex vivo translation by a transplatin-modified oligo(2'-O-methylribonucleotide) directed against the HIV-1 gag-pol frameshift signal
Nucl. Acids Res. 2000 28: 438-445; doi:10.1093/nar/28.2.438 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Peter J. Greasley, Claude Bonnard, and Bruno Amati

Myc induces the nucleolin and BN51 genes: possible implications in ribosome biogenesis
Nucl. Acids Res. 2000 28: 446-453; doi:10.1093/nar/28.2.446 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

M. Decoville, M. J. Giraud-Panis, C. Mosrin-Huaman, M. Leng, and D. Locker

HMG boxes of DSP1 protein interact with the Rel homology domain of transcription factors
Nucl. Acids Res. 2000 28: 454-462; doi:10.1093/nar/28.2.454 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kevin M. Culligan, Gilbert Meyer-Gauen, James Lyons-Weiler, and John B. Hays

Evolutionary origin, diversification and specialization of eukaryotic MutS homolog mismatch repair proteins
Nucl. Acids Res. 2000 28: 463-471; doi:10.1093/nar/28.2.463 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Peter J. Gillespie and J. Julian Blow

Nucleoplasmin-mediated chromatin remodelling is required for Xenopus sperm nuclei to become licensed for DNA replication
Nucl. Acids Res. 2000 28: 472-480; doi:10.1093/nar/28.2.472 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jing Li, Wenchao Zheng, Angela H. Kwon, and Yi Lu

In vitro selection and characterization of a highly efficient Zn(II)-dependent RNA-cleaving deoxyribozyme
Nucl. Acids Res. 2000 28: 481-488; doi:10.1093/nar/28.2.481 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Andrew M. Parrott, Hugo Lago, Chris J. Adams, Alison E. Ashcroft, Nicola J. Stonehouse, and Peter G. Stockley

RNA aptamers for the MS2 bacteriophage coat protein and the wild-type RNA operator have similar solution behaviour
Nucl. Acids Res. 2000 28: 489-497; doi:10.1093/nar/28.2.489 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

E. Viguera, P. Hernández, D. B. Krimer, R. Lurz, and J. B. Schvartzman

Visualisation of plasmid replication intermediates containing reversed forks
Nucl. Acids Res. 2000 28: 498-503; doi:10.1093/nar/28.2.498 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Chantal Pichon, Mahajoub Bello Roufaï, Michel Monsigny, and Patrick Midoux

Histidylated oligolysines increase the transmembrane passage and the biological activity of antisense oligonucleotides
Nucl. Acids Res. 2000 28: 504-512; doi:10.1093/nar/28.2.504 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Faina Vikhanskaya, Maurizio D’Incalci, and Massimo Broggini

p73 competes with p53 and attenuates its response in a human ovarian cancer cell line
Nucl. Acids Res. 2000 28: 513-519; doi:10.1093/nar/28.2.513 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Lee S. Hatton, Jyrki J. Eloranta, Luisa M. Figueiredo, Yoshio Takagaki, James L. Manley, and Kevin O’Hare

The Drosophila homologue of the 64 kDa subunit of cleavage stimulation factor interacts with the 77 kDa subunit encoded by the suppressor of forked gene
Nucl. Acids Res. 2000 28: 520-526; doi:10.1093/nar/28.2.520 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Karen G. Spink, Rebecca J. Evans, and Alistair Chambers

Sequence-specific binding of Taz1p dimers to fission yeast telomeric DNA
Nucl. Acids Res. 2000 28: 527-533; doi:10.1093/nar/28.2.527 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Michael J. Feldhaus, Michael Lualhati, Karen Cardon, Bruce Roth, and Alexander Kamb

Oligonucleotide-conjugated beads for transdominant genetic experiments
Nucl. Acids Res. 2000 28: 534-543; doi:10.1093/nar/28.2.534 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Toshinori Suzuki, Hiroshi Ide, Masaki Yamada, Nobuyuki Endo, Kenji Kanaori, Kunihiko Tajima, Takashi Morii, and Keisuke Makino

Formation of 2'-deoxyoxanosine from 2'-deoxyguanosine and nitrous acid: mechanism and intermediates
Nucl. Acids Res. 2000 28: 544-551; doi:10.1093/nar/28.2.544 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Angels Tapias, Gema López, and Silvia Ayora

Bacillus subtilis LrpC is a sequence-independent DNA-binding and DNA-bending protein which bridges DNA
Nucl. Acids Res. 2000 28: 552-559; doi:10.1093/nar/28.2.552 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Pamela Dalgleish and Andrew D. Sharrocks

The mechanism of complex formation between Fli-1 and SRF transcription factors
Nucl. Acids Res. 2000 28: 560-569; doi:10.1093/nar/28.2.560 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Christopher R. Houchens, William Montigny, Lori Zeltser, Lisa Dailey, Jonathan M. Gilbert, and N. H. Heintz

The dhfr oriß-binding protein RIP60 contains 15 zinc fingers: DNA binding and looping by the central three fingers and an associated proline-rich region
Nucl. Acids Res. 2000 28: 570-581; doi:10.1093/nar/28.2.570 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Peter Lorenz, Tom Misteli, Brenda F. Baker, C. Frank Bennett, and David L. Spector

Nucleocytoplasmic shuttling: a novel in vivo property of antisense phosphorothioate oligodeoxynucleotides
Nucl. Acids Res. 2000 28: 582-592; doi:10.1093/nar/28.2.582 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

X. Z. Feng, R. Bash, P. Balagurumoorthy, D. Lohr, R. E. Harrington, and S. M. Lindsay

Conformational transition in DNA on a cold surface
Nucl. Acids Res. 2000 28: 593-596; doi:10.1093/nar/28.2.593 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Magali Berberof, Luc Vanhamme, Sylvie Alexandre, Stéphane Lips, Patricia Tebabi, and Etienne Pays

A single-stranded DNA-binding protein shared by telomeric repeats, the variant surface glycoprotein transcription promoter and the procyclin transcription terminator of Trypanosoma brucei
Nucl. Acids Res. 2000 28: 597-604; doi:10.1093/nar/28.2.597 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

John A. L. Armour, Carolina Sismani, Philippos C. Patsalis, and Gareth Cross

Measurement of locus copy number by hybridisation with amplifiable probes
Nucl. Acids Res. 2000 28: 605-609; doi:10.1093/nar/28.2.605 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sander W. M. Teunissen, Martijn J. M. Kruithof, A. Darise Farris, John B. Harley, Walther J. van Venrooij, and Ger J. M. Pruijn

Conserved features of Y RNAs: a comparison of experimentally derived secondary structures
Nucl. Acids Res. 2000 28: 610-619; doi:10.1093/nar/28.2.610 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sylvie Briand Schumacher, Manuel Stucki, and Ulrich Hübscher

The N-terminal region of DNA polymerase catalytic subunit is necessary for holoenzyme function
Nucl. Acids Res. 2000 28: 620-625; doi:10.1093/nar/28.2.620 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Hiroshi Kataoka, Toshinori Murayama, Masayuki Yokode, Seiichi Mori, Hideto Sano, Harunobu Ozaki, Yoshifumi Yokota, Shin-Ichi Nishikawa, and Toru Kita

A novel Snail-related transcription factor Smuc regulates basic helix–loop–helix transcription factor activities via specific E-box motifs
Nucl. Acids Res. 2000 28: 626-633; doi:10.1093/nar/28.2.626 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Fabienne Brulé, Guillaume Bec, Gérard Keith, Stuart F. J. Le Grice, Bernard P. Roques, Bernard Ehresmann, Chantal Ehresmann, and Roland Marquet

In vitro evidence for the interaction of tRNA₃^Lys with U3 during the first strand transfer of HIV-1 reverse transcription
Nucl. Acids Res. 2000 28: 634-640; doi:10.1093/nar/28.2.634 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

B. Stefanovic, J. Lindquist, and D. A. Brenner

The 5' stem–loop regulates expression of collagen 1(I) mRNA in mouse fibroblasts cultured in a three-dimensional matrix
Nucl. Acids Res. 2000 28: 641-647; doi:10.1093/nar/28.2.641 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Michael J. Moser, Ashwini S. Kamath-Loeb, Jessica E. Jacob, Samuel E. Bennett, Junko Oshima, and Raymond J. Monnat

WRN helicase expression in Werner syndrome cell lines
Nucl. Acids Res. 2000 28: 648-654; doi:10.1093/nar/28.2.648 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Igor V. Kutyavin, Irina A. Afonina, Alan Mills, Vladimir V. Gorn, Eugeny A. Lukhtanov, Evgeniy S. Belousov, Michael J. Singer, David K. Walburger, Sergey G. Lokhov, Alexander A. Gall, Robert Dempcy, Michael W. Reed, Rich B. Meyer, and Joe Hedgpeth

3'-Minor groove binder-DNA probes increase sequence specificity at PCR extension temperatures
Nucl. Acids Res. 2000 28: 655-661; doi:10.1093/nar/28.2.655 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Jingfeng Li, Fuli Wang, Veronika Zabarovska, Claes Wahlestedt, and Eugene R. Zabarovsky

Cloning of polymorphisms (COP): enrichment of polymorphic sequences from complex genomes
Nucl. Acids Res. 2000 28: e1; doi:10.1093/nar/28.2.e1 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

John J. Kang, Robert M. Watson, Mary E. Fisher, Russell Higuchi, David H. Gelfand, and Michael J. Holland

Transcript quantitation in total yeast cellular RNA using kinetic PCR
Nucl. Acids Res. 2000 28: e2; doi:10.1093/nar/28.2.e2 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Hui Ge

UPA, a universal protein array system for quantitative detection of protein–protein, protein–DNA, protein–RNA and protein–ligand interactions
Nucl. Acids Res. 2000 28: e3; doi:10.1093/nar/28.2.e3 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Joseph Toth and Mark D. Biggin

The specificity of protein–DNA crosslinking by formaldehyde: in vitro and in Drosophila embryos
Nucl. Acids Res. 2000 28: e4; doi:10.1093/nar/28.2.e4 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Joanne D. Andreadis and Linda A. Chrisey

Use of immobilized PCR primers to generate covalently immobilized DNAs for in vitro transcription/translation reactions
Nucl. Acids Res. 2000 28: e5; doi:10.1093/nar/28.2.e5 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Thorsten Allers and Michael Lichten

A method for preparing genomic DNA that restrains branch migration of Holliday junctions
Nucl. Acids Res. 2000 28: e6; doi:10.1093/nar/28.2.e6 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Heinz Himmelbauer, Leonard C. Schalkwyk, and Hans Lehrach

Interspersed repetitive sequence (IRS)–PCR for typing of whole genome radiation hybrid panels
Nucl. Acids Res. 2000 28: e7; doi:10.1093/nar/28.2.e7 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Qasim Ayub, Aisha Mohyuddin, Raheel Qamar, Kehkashan Mazhar, Tatiana Zerjal, S. Qasim Mehdi, and Chris Tyler-Smith

Identification and characterisation of novel human Y-chromosomal microsatellites from sequence database information
Nucl. Acids Res. 2000 28: e8; doi:10.1093/nar/28.2.e8 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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