Nucleic Acids Research

Articles:

Werner G. Krebs and Mark Gerstein

SURVEY AND SUMMARY: The morph server: a standardized system for analyzing and visualizing macromolecular motions in a database framework
Nucl. Acids Res. 2000 28: 1665-1675; doi:10.1093/nar/28.8.1665 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Fahd Nasr and Witold Filipowicz

Characterization of the Saccharomyces cerevisiae cyclic nucleotide phosphodiesterase involved in the metabolism of ADP-ribose 1'',2''-cyclic phosphate
Nucl. Acids Res. 2000 28: 1676-1683; doi:10.1093/nar/28.8.1676 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Christine Allmang, Philip Mitchell, Elisabeth Petfalski, and David Tollervey

Degradation of ribosomal RNA precursors by the exosome
Nucl. Acids Res. 2000 28: 1684-1691; doi:10.1093/nar/28.8.1684 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Valérie Garcia, Marcel Salanoubat, Nathalie Choisne, and Alain Tissier

An ATM homologue from Arabidopsis thaliana: complete genomic organisation and expression analysis
Nucl. Acids Res. 2000 28: 1692-1699; doi:10.1093/nar/28.8.1692 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Carrie A. Davis, Leslie Grate, Marc Spingola, and Manuel Ares, Jr

Test of intron predictions reveals novel splice sites, alternatively spliced mRNAs and new introns in meiotically regulated genes of yeast
Nucl. Acids Res. 2000 28: 1700-1706; doi:10.1093/nar/28.8.1700 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Marcus Lutz, Les J. Burke, Guillermo Barreto, Frauke Goeman, Heiko Greb, Rüdiger Arnold, Holger Schultheiß, Alexander Brehm, Tony Kouzarides, Victor Lobanenkov, and Rainer Renkawitz

Transcriptional repression by the insulator protein CTCF involves histone deacetylases
Nucl. Acids Res. 2000 28: 1707-1713; doi:10.1093/nar/28.8.1707 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Marek Figlerowicz

Role of RNA structure in non-homologous recombination between genomic molecules of brome mosaic virus
Nucl. Acids Res. 2000 28: 1714-1723; doi:10.1093/nar/28.8.1714 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Mayla Hsu, Liwei Rong, Hugues de Rocquigny, Bernard P. Roques, and Mark A. Wainberg

The effect of mutations in the HIV-1 nucleocapsid protein on strand transfer in cell-free reverse transcription reactions
Nucl. Acids Res. 2000 28: 1724-1729; doi:10.1093/nar/28.8.1724 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Koichi Yoshinari and Kazunari Taira

A further investigation and reappraisal of the thio effect in the cleavage reaction catalyzed by a hammerhead ribozyme
Nucl. Acids Res. 2000 28: 1730-1742; doi:10.1093/nar/28.8.1730 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Makoto Inoue, Yutaka Muto, Hiroshi Sakamoto, and Shigeyuki Yokoyama

NMR studies on functional structures of the AU-rich element-binding domains of Hu antigen C
Nucl. Acids Res. 2000 28: 1743-1750; doi:10.1093/nar/28.8.1743 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Michael P. Robertson and Andrew D. Ellington

Design and optimization of effector-activated ribozyme ligases
Nucl. Acids Res. 2000 28: 1751-1759; doi:10.1093/nar/28.8.1751 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Howard Robinson, Yi-Gui Gao, Ruslan Sanishvili, Andrzej Joachimiak, and Andrew H.-J. Wang

Hexahydrated magnesium ions bind in the deep major groove and at the outer mouth of A-form nucleic acid duplexes
Nucl. Acids Res. 2000 28: 1760-1766; doi:10.1093/nar/28.8.1760 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Pierre Rollini and R. E. K. Fournier

Differential regulation of gene activity and chromatin structure within the human serpin gene cluster at 14q32.1 in macrophage microcell hybrids
Nucl. Acids Res. 2000 28: 1767-1777; doi:10.1093/nar/28.8.1767 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Lawrence B. Blyn, Lisa M. Risen, Richard H. Griffey, and David E. Draper

The RNA-binding domain of ribosomal protein L11 recognizes an rRNA tertiary structure stabilized by both thiostrepton and magnesium ion
Nucl. Acids Res. 2000 28: 1778-1784; doi:10.1093/nar/28.8.1778 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jan Wrzesinski, Micha Legiewicz, and Jerzy Ciesiolka

Mapping of accessible sites for oligonucleotide hybridization on hepatitis delta virus ribozymes
Nucl. Acids Res. 2000 28: 1785-1793; doi:10.1093/nar/28.8.1785 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Joon-Hwa Lee, Yun-Jeong Choi, and Byong-Seok Choi

Solution structure of the DNA decamer duplex containing a 3'-T·T base pair of the cis–syn cyclobutane pyrimidine dimer: implication for the mutagenic property of the cis–syn dimer
Nucl. Acids Res. 2000 28: 1794-1801; doi:10.1093/nar/28.8.1794 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Zheng Ye and James R. Connor

Identification of iron responsive genes by screening cDNA libraries from suppression subtractive hybridization with antisense probes from three iron conditions
Nucl. Acids Res. 2000 28: 1802-1807; doi:10.1093/nar/28.8.1802 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jacques van Helden, Alma. F. Rios, and Julio Collado-Vides

Discovering regulatory elements in non-coding sequences by analysis of spaced dyads
Nucl. Acids Res. 2000 28: 1808-1818; doi:10.1093/nar/28.8.1808 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Huawei Zeng, Sunil Kaul, and S. Stoney Simons

Genomic organization of human GMEB-1 and rat GMEB-2: structural conservation of two multifunctional proteins
Nucl. Acids Res. 2000 28: 1819-1829; doi:10.1093/nar/28.8.1819 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Devanjan Sikder and Valakunja Nagaraja

Determination of the recognition sequence of Mycobacterium smegmatis topoisomerase I on mycobacterial genomic sequences
Nucl. Acids Res. 2000 28: 1830-1837; doi:10.1093/nar/28.8.1830 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ernesto Pérez-Rueda and Julio Collado-Vides

The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12
Nucl. Acids Res. 2000 28: 1838-1847; doi:10.1093/nar/28.8.1838 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Jussi Nurmi, Alice Ylikoski, Tero Soukka, Matti Karp, and Timo Lövgren

A new label technology for the detection of specific polymerase chain reaction products in a closed tube
Nucl. Acids Res. 2000 28: e28-e; doi:10.1093/nar/28.8.e28 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sergey A. Surzhikov, Edward N. Timofeev, Boris K. Chernov, Julia B. Golova, and Andrei D. Mirzabekov

Advanced method for oligonucleotide deprotection
Nucl. Acids Res. 2000 28: e29-e; doi:10.1093/nar/28.8.e29 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Huangpin B. Hsieh, Mei Wang, Robert A. Lersch, Ung-Jin Kim, and Heinz-Ulrich G. Weier

Rational design of landmark probes for quantitative DNA fiber mapping (QDFM)
Nucl. Acids Res. 2000 28: e30-e; doi:10.1093/nar/28.8.e30 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Norman H. L. Chiu, Kai Tang, Ping Yip, Andreas Braun, Hubert Koster, and Charles R. Cantor

Mass spectrometry of single-stranded restriction fragments captured by an undigested complementary sequence
Nucl. Acids Res. 2000 28: e31-e; doi:10.1093/nar/28.8.e31 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Cindy A. Eads, Kathleen D. Danenberg, Kazuyuki Kawakami, Leonard B. Saltz, Corey Blake, Darryl Shibata, Peter V. Danenberg, and Peter W. Laird

MethyLight: a high-throughput assay to measure DNA methylation
Nucl. Acids Res. 2000 28: e32-e; doi:10.1093/nar/28.8.e32 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Chandran R. Sabanayagam, Cassandra L. Smith, and Charles R. Cantor

Oligonucleotide immobilization on micropatterned streptavidin surfaces
Nucl. Acids Res. 2000 28: e33-e; doi:10.1093/nar/28.8.e33 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Masayuki Masuko, Shohkichi Ohuchi, Koji Sode, Hiroyuki Ohtani, and Akira Shimadzu

Fluorescence resonance energy transfer from pyrene to perylene labels for nucleic acid hybridization assays under homogeneous solution conditions
Nucl. Acids Res. 2000 28: e34-e; doi:10.1093/nar/28.8.e34 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Felix Hausch and Andres Jäschke

Multifunctional DNA conjugates for the in vitro selection of new catalysts
Nucl. Acids Res. 2000 28: e35-e; doi:10.1093/nar/28.8.e35 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Pawe Sachadyn, Anna Stanisawska, and Józef Kur

One tube mutation detection using sensitive fluorescent dyeing of MutS protected DNA
Nucl. Acids Res. 2000 28: e36-e; doi:10.1093/nar/28.8.e36 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Frank Vitzthum, Georg Geiger, Hans Bisswanger, Bentsian Elkine, Herwig Brunner, and Jürgen Bernhagen

Amplifiable DNA from Gram-negative and Gram-positive bacteria by a low strength pulsed electric field method
Nucl. Acids Res. 2000 28: e37-e; doi:10.1093/nar/28.8.e37 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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