Nucleic Acids Research

Articles:

Dewang Zhou and Susan M. Lobo-Ruppert

Transcription of the Schizosaccharomyces pombe U2 gene in vivo and in vitro is directed by two essential promoter elements
Nucl. Acids Res. 2001 29: 2003-2011; doi:10.1093/nar/29.10.2003 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Douglas J. LaCount, Najib M. El-Sayed, Samir Kaul, David Wanless, C. Michael R. Turner, and John E. Donelson

Analysis of a donor gene region for a variant surface glycoprotein and its expression site in African trypanosomes
Nucl. Acids Res. 2001 29: 2012-2019; doi:10.1093/nar/29.10.2012 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Nisreen M. Al-Moghrabi, Ibtehaj S. Al-Sharif, and Abdelilah Aboussekhra

The Saccharomyces cerevisiae RAD9 cell cycle checkpoint gene is required for optimal repair of UV-induced pyrimidine dimers in both G₁ and G₂/M phases of the cell cycle
Nucl. Acids Res. 2001 29: 2020-2025; doi:10.1093/nar/29.10.2020 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Duncan T. Odom, Erik A. Dill, and Jacqueline K. Barton

Charge transport through DNA four-way junctions
Nucl. Acids Res. 2001 29: 2026-2033; doi:10.1093/nar/29.10.2026 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ctirad Hofr, Nicholas Farrell, and Viktor Brabec

Thermodynamic properties of duplex DNA containing a site-specific d(GpG) intrastrand crosslink formed by an antitumor dinuclear platinum complex
Nucl. Acids Res. 2001 29: 2034-2040; doi:10.1093/nar/29.10.2034 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Muhammad Sohail, Helfrid Hochegger, Andrea Klotzbücher, Rene Le Guellec, Tim Hunt, and Edwin M. Southern

Antisense oligonucleotides selected by hybridisation to scanning arrays are effective reagents in vivo
Nucl. Acids Res. 2001 29: 2041-2051; doi:10.1093/nar/29.10.2041 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Michelle Scott, François-Michel Boisvert, Diego Vieyra, Randal N. Johnston, David P. Bazett-Jones, and Karl Riabowol

UV induces nucleolar translocation of ING1 through two distinct nucleolar targeting sequences
Nucl. Acids Res. 2001 29: 2052-2058; doi:10.1093/nar/29.10.2052 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Leonard H. M. van Lin, Tomasino Pace, Chris J. Janse, Cecilia Birago, Jai Ramesar, Leonardo Picci, Marta Ponzi, and Andrew P. Waters

Interspecies conservation of gene order and intron–exon structure in a genomic locus of high gene density and complexity in Plasmodium
Nucl. Acids Res. 2001 29: 2059-2068; doi:10.1093/nar/29.10.2059 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Frank Seela and Georg Becher

Pyrazolo[3,4-d]pyrimidine nucleic acids: adjustment of dA-dT to dG-dC base pair stability
Nucl. Acids Res. 2001 29: 2069-2078; doi:10.1093/nar/29.10.2069 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Fuxin Shi, Anita Nomden, Volker Oberle, Jan. B. F. N. Engberts, and Dick Hoekstra

Efficient cationic lipid-mediated delivery of antisense oligonucleotides into eukaryotic cells: down-regulation of the corticotropin-releasing factor receptor
Nucl. Acids Res. 2001 29: 2079-2087; doi:10.1093/nar/29.10.2079 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Oliver G. Rössler, Andreas Straka, and Hans Stahl

Rearrangement of structured RNA via branch migration structures catalysed by the highly related DEAD-box proteins p68 and p72
Nucl. Acids Res. 2001 29: 2088-2096; doi:10.1093/nar/29.10.2088 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sunita Ramanathan, K. V. R. Chary, and Basuthkar J. Rao

Incoming nucleotide binds to Klenow ternary complex leading to stable physical sequestration of preceding dNTP on DNA
Nucl. Acids Res. 2001 29: 2097-2105; doi:10.1093/nar/29.10.2097 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Colette A. Côté and Brenda A. Peculis

Role of the ITS2-proximal stem and evidence for indirect recognition of processing sites in pre-rRNA processing in yeast
Nucl. Acids Res. 2001 29: 2106-2116; doi:10.1093/nar/29.10.2106 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Michelle L. Hamilton, ZhongMao Guo, Clinton D. Fuller, Holly Van Remmen, Walter F. Ward, Steven N. Austad, Dean A. Troyer, Ian Thompson, and Arlan Richardson

A reliable assessment of 8-oxo-2-deoxyguanosine levels in nuclear and mitochondrial DNA using the sodium iodide method to isolate DNA
Nucl. Acids Res. 2001 29: 2117-2126; doi:10.1093/nar/29.10.2117 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Lisa Bartee and Judith Bender

Two Arabidopsis methylation-deficiency mutations confer only partial effects on a methylated endogenous gene family
Nucl. Acids Res. 2001 29: 2127-2134; doi:10.1093/nar/29.10.2127 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jan Gorodkin, Shawn L. Stricklin, and Gary D. Stormo

Discovering common stem–loop motifs in unaligned RNA sequences
Nucl. Acids Res. 2001 29: 2135-2144; doi:10.1093/nar/29.10.2135 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Isabelle Chambaud, Roland Heilig, Stéphane Ferris, Valérie Barbe, Delphine Samson, Frédérique Galisson, Ivan Moszer, Kevin Dybvig, Henri Wróblewski, Alain Viari, Eduardo P.C. Rocha, and Alain Blanchard

The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis
Nucl. Acids Res. 2001 29: 2145-2153; doi:10.1093/nar/29.10.2145 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yoshihiro Omori, Jun-ichi Imai, Manabu Watanabe, Takami Komatsu, Yutaka Suzuki, Kohsuke Kataoka, Shinya Watanabe, Akira Tanigami, and Sumio Sugano

CREB-H: a novel mammalian transcription factor belonging to the CREB/ATF family and functioning via the box-B element with a liver-specific expression
Nucl. Acids Res. 2001 29: 2154-2162; doi:10.1093/nar/29.10.2154 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ali Sabahi, Jesse Guidry, Gopal B. Inamati, Muthiah Manoharan, and Pernilla Wittung-Stafshede

Hybridization of 2'-ribose modified mixed-sequence oligonucleotides: thermodynamic and kinetic studies
Nucl. Acids Res. 2001 29: 2163-2170; doi:10.1093/nar/29.10.2163 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Eric LeProust, Hua Zhang, Peilin Yu, Xiaochuan Zhou, and Xiaolian Gao

Characterization of oligodeoxyribonucleotide synthesis on glass plates
Nucl. Acids Res. 2001 29: 2171-2180; doi:10.1093/nar/29.10.2171 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Bassel Akache, Keqiang Wu, and Bernard Turcotte

Phenotypic analysis of genes encoding yeast zinc cluster proteins
Nucl. Acids Res. 2001 29: 2181-2190; doi:10.1093/nar/29.10.2181 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Spencer J. Greenwood, Murray N. Schnare, James R. Cook, and Michael W. Gray

Analysis of intergenic spacer transcripts suggests ‘read-around’ transcription of the extrachromosomal circular rDNA in Euglena gracilis
Nucl. Acids Res. 2001 29: 2191-2198; doi:10.1093/nar/29.10.2191 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

William C. Putnam, Andrew T. Daniher, Bobby N. Trawick, and James K. Bashkin

Efficient new ribozyme mimics: direct mapping of molecular design principles from small molecules to macromolecular, biomimetic catalysts
Nucl. Acids Res. 2001 29: 2199-2204; doi:10.1093/nar/29.10.2199 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

NAR Methods Online:

Zhijian J. Chen, Hongxie Shen, and Kenneth D. Tew

Gene expression profiling using a novel method: amplified differential gene expression (ADGE)
Nucl. Acids Res. 2001 29: e46; doi:10.1093/nar/29.10.e46 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Frank T. Wunderlich, Hendrik Wildner, Klaus Rajewsky, and Frank Edenhofer

New variants of inducible Cre recombinase: a novel mutant of Cre–PR fusion protein exhibits enhanced sensitivity and an expanded range of inducibility
Nucl. Acids Res. 2001 29: e47; doi:10.1093/nar/29.10.e47 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

A. I. Kraltcheva and S. H. Hardin

Octamer-primed sequencing technology: effects of dNTP supplementation
Nucl. Acids Res. 2001 29: e48; doi:10.1093/nar/29.10.e48 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

K. G. Patteson, Lenore Polo Rodicio, and Patrick A. Limbach

Identification of the mass-silent post-transcriptionally modified nucleoside pseudouridine in RNA by matrix-assisted laser desorption/ionization mass spectrometry
Nucl. Acids Res. 2001 29: e49; doi:10.1093/nar/29.10.e49 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

David Enshell-Seijffers, Larisa Smelyanski, and Jonathan M. Gershoni

The rational design of a ‘type 88’ genetically stable peptide display vector in the filamentous bacteriophage fd
Nucl. Acids Res. 2001 29: e50; doi:10.1093/nar/29.10.e50 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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