Nucleic Acids Research

Survey and Summary:

John A. Lewis and Graham F. Hatfull

Control of directionality in integrase-mediated recombination: examination of recombination directionality factors (RDFs) including Xis and Cox proteins
Nucl. Acids Res. 2001 29: 2205-2216; doi:10.1093/nar/29.11.2205 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Articles:

Mansour Boutabout, Marcelle Wilhelm, and François-Xavier Wilhelm

DNA synthesis fidelity by the reverse transcriptase of the yeast retrotransposon Ty1
Nucl. Acids Res. 2001 29: 2217-2222; doi:10.1093/nar/29.11.2217 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Xavier Manival, Laurence Ghisolfi-Nieto, Gérard Joseph, Philippe Bouvet, and Monique Erard

RNA-binding strategies common to cold-shock domain- and RNA recognition motif-containing proteins
Nucl. Acids Res. 2001 29: 2223-2233; doi:10.1093/nar/29.11.2223 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

James T. Drummond and Alfonso Bellacosa

Human DNA mismatch repair in vitro operates independently of methylation status at CpG sites
Nucl. Acids Res. 2001 29: 2234-2243; doi:10.1093/nar/29.11.2234 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Naoki Sato and Niji Ohta

DNA-binding specificity and dimerization of the DNA-binding domain of the PEND protein in the chloroplast envelope membrane
Nucl. Acids Res. 2001 29: 2244-2250; doi:10.1093/nar/29.11.2244 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Anna Zawilak, Stanislaw Cebrat, Pawel Mackiewicz, Anna Król-Hulewicz, Dagmara Jakimowicz, Walter Messer, Grazyna Gosciniak, and Jolanta Zakrzewska-Czerwinska

Identification of a putative chromosomal replication origin from Helicobacter pylori and its interaction with the initiator protein DnaA
Nucl. Acids Res. 2001 29: 2251-2259; doi:10.1093/nar/29.11.2251 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Serge P. Parel and Christian J. Leumann

Triple-helix formation in the antiparallel binding motif of oligodeoxynucleotides containing N⁹- and N⁷-2-aminopurine deoxynucleosides
Nucl. Acids Res. 2001 29: 2260-2267; doi:10.1093/nar/29.11.2260 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Stéphan Fiset and Benoit Chabot

hnRNP A1 may interact simultaneously with telomeric DNA and the human telomerase RNA in vitro
Nucl. Acids Res. 2001 29: 2268-2275; doi:10.1093/nar/29.11.2268 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Zhenzhong Li, Youyi Zhang, Li Ku, Keith D. Wilkinson, Stephen T. Warren, and Yue Feng

The fragile X mental retardation protein inhibits translation via interacting with mRNA
Nucl. Acids Res. 2001 29: 2276-2283; doi:10.1093/nar/29.11.2276 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Zhenyu Tang and Tom Kadesch

Identification of a novel activation domain in the Notch-responsive transcription factor CSL
Nucl. Acids Res. 2001 29: 2284-2291; doi:10.1093/nar/29.11.2284 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Shirley R. Bruce and Martha L. Peterson

Multiple features contribute to efficient constitutive splicing of an unusually large exon
Nucl. Acids Res. 2001 29: 2292-2302; doi:10.1093/nar/29.11.2292 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Vadim A. Vasiliskov, Dmitry V. Prokopenko, and Andrei D. Mirzabekov

Parallel multiplex thermodynamic analysis of coaxial base stacking in DNA duplexes by oligodeoxyribonucleotide microchips
Nucl. Acids Res. 2001 29: 2303-2313; doi:10.1093/nar/29.11.2303 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sylvie Derreumaux, Mounia Chaoui, Georges Tevanian, and Serge Fermandjian

Impact of CpG methylation on structure, dynamics and solvation of cAMP DNA responsive element
Nucl. Acids Res. 2001 29: 2314-2326; doi:10.1093/nar/29.11.2314 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Takanori Watanabe, Kazuyuki Miyashita, Takamune T. Saito, Takahiro Yoneki, Yoshito Kakihara, Kentaro Nabeshima, Yuko A. Kishi, Chikashi Shimoda, and Hiroshi Nojima

Comprehensive isolation of meiosis-specific genes identifies novel proteins and unusual non-coding transcripts in Schizosaccharomyces pombe
Nucl. Acids Res. 2001 29: 2327-2337; doi:10.1093/nar/29.11.2327 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Michael Brudno, Mikhail S. Gelfand, Sylvia Spengler, Manfred Zorn, Inna Dubchak, and John G. Conboy

Computational analysis of candidate intron regulatory elements for tissue-specific alternative pre-mRNA splicing
Nucl. Acids Res. 2001 29: 2338-2348; doi:10.1093/nar/29.11.2338 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Daisuke Tsuchimoto, Yasunari Sakai, Kunihiko Sakumi, Kenichi Nishioka, Masafumi Sasaki, Toshiyuki Fujiwara, and Yusaku Nakabeppu

Human APE2 protein is mostly localized in the nuclei and to some extent in the mitochondria, while nuclear APE2 is partly associated with proliferating cell nuclear antigen
Nucl. Acids Res. 2001 29: 2349-2360; doi:10.1093/nar/29.11.2349 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ernst G. Malygin, Alexey A. Evdokimov, Victor V. Zinoviev, Lidiya G. Ovechkina, William M. Lindstrom, Norbert O. Reich, Samuel L. Schlagman, and Stanley Hattman

A dual role for substrate S-adenosyl-L-methionine in the methylation reaction with bacteriophage T4 Dam DNA-[N6-adenine]-methyltransferase
Nucl. Acids Res. 2001 29: 2361-2369; doi:10.1093/nar/29.11.2361 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Barry A. Linkletter, Istvan E. Szabo, and Thomas C. Bruice

Solid-phase synthesis of oligopurine deoxynucleic guanidine (DNG) and analysis of binding with DNA oligomers
Nucl. Acids Res. 2001 29: 2370-2376; doi:10.1093/nar/29.11.2370 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Raj Chakrabarti and Clarence E. Schutt

The enhancement of PCR amplification by low molecular weight amides
Nucl. Acids Res. 2001 29: 2377-2381; doi:10.1093/nar/29.11.2377 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Alo Ray and Kurt W. Runge

Yeast telomerase appears to frequently copy the entire template in vivo
Nucl. Acids Res. 2001 29: 2382-2394; doi:10.1093/nar/29.11.2382 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ioannis Papaefthimiou, Andrew Hamilton, Michela Denti, David Baulcombe, Mina Tsagris, and Martin Tabler

Replicating potato spindle tuber viroid RNA is accompanied by short RNA fragments that are characteristic of post-transcriptional gene silencing
Nucl. Acids Res. 2001 29: 2395-2400; doi:10.1093/nar/29.11.2395 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Manuela Rist and John Marino

Association of an RNA kissing complex analyzed using 2-aminopurine fluorescence
Nucl. Acids Res. 2001 29: 2401-2408; doi:10.1093/nar/29.11.2401 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sibghat-Ullah Lari, Rufus S. Day, Kelly Dobler, and Malcolm C. Paterson

Initiation of strand incision at G:T and O⁶-methylguanine:T base mismatches in DNA by human cell extracts
Nucl. Acids Res. 2001 29: 2409-2417; doi:10.1093/nar/29.11.2409 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Adonis Skandalis and Lawrence A. Loeb

Enzymatic properties of rat DNA polymerase ß mutants obtained by randomized mutagenesis
Nucl. Acids Res. 2001 29: 2418-2426; doi:10.1093/nar/29.11.2418 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

F. Guillonneau, A. L. Guieysse, J. P. Le Caer, J. Rossier, and D. Praseuth

Selection and identification of proteins bound to DNA triple-helical structures by combination of 2D-electrophoresis and MALDI-TOF mass spectrometry
Nucl. Acids Res. 2001 29: 2427-2436; doi:10.1093/nar/29.11.2427 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Benoît Kornmann, Nicolas Preitner, Danièle Rifat, Fabienne Fleury-Olela, and Ueli Schibler

Analysis of circadian liver gene expression by ADDER, a highly sensitive method for the display of differentially expressed mRNAs
Nucl. Acids Res. 2001 29: e51; doi:10.1093/nar/29.11.e51 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Franz Watzinger, Elfriede Hörth, and Thomas Lion

Quantification of mRNA expression by competitive PCR using non-homologous competitors containing a shifted restriction site
Nucl. Acids Res. 2001 29: e52; doi:10.1093/nar/29.11.e52 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Dagmar Werdien, Gudrun Peiler, and Gerhart U. Ryffel

FLP and Cre recombinase function in Xenopus embryos
Nucl. Acids Res. 2001 29: e53; doi:10.1093/nar/29.11.e53 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Susan D. Wharam, Peter Marsh, John S. Lloyd, Trevor D. Ray, Graham A. Mock, René Assenberg, Julie E. McPhee, Philip Brown, Anthony Weston, and Donald L. N. Cardy

Specific detection of DNA and RNA targets using a novel isothermal nucleic acid amplification assay based on the formation of a three-way junction structure
Nucl. Acids Res. 2001 29: e54; doi:10.1093/nar/29.11.e54 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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