Nucleic Acids Research

Survey and Summary:

Ying Huang and Richard J. Maraia

Comparison of the RNA polymerase III transcription machinery in Schizosaccharomyces pombe, Saccharomyces cerevisiae and human
Nucl. Acids Res. 2001 29: 2675-2690; doi:10.1093/nar/29.13.2675 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Articles:

Lisa Hooker, Rebecca Strong, Ralph Adams, Balraj Handa, John H. Merrett, Joseph A. Martin, and Klaus Klumpp

A sensitive, single-tube assay to measure the enzymatic activities of influenza RNA polymerase and other poly(A) polymerases: application to kinetic and inhibitor analysis
Nucl. Acids Res. 2001 29: 2691-2698; doi:10.1093/nar/29.13.2691 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Brian P. Chadwick, Cory M. Valley, and Huntington F. Willard

Histone variant macroH2A contains two distinct macrochromatin domains capable of directing macroH2A to the inactive X chromosome
Nucl. Acids Res. 2001 29: 2699-2705; doi:10.1093/nar/29.13.2699 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ulrike Fiedler and H. Th. Marc Timmers

Analysis of the open region of RNA polymerase II transcription complexes in the early phase of elongation
Nucl. Acids Res. 2001 29: 2706-2714; doi:10.1093/nar/29.13.2706 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Virgen Rodriguez-Wells, Stephen J. Plotch, and Jeffrey J. DeStefano

Primer-dependent synthesis by poliovirus RNA-dependent RNA polymerase (3D^pol)
Nucl. Acids Res. 2001 29: 2715-2724; doi:10.1093/nar/29.13.2715 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Nathalie Berthet, Yoann Roupioz, Jean-François Constant, Mitsuharu Kotera, and Jean Lhomme

Translesional synthesis on DNA templates containing the 2'-deoxyribonolactone lesion
Nucl. Acids Res. 2001 29: 2725-2732; doi:10.1093/nar/29.13.2725 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Anthony Henras, Christophe Dez, Jacqueline Noaillac-Depeyre, Yves Henry, and Michèle Caizergues-Ferrer

Accumulation of H/ACA snoRNPs depends on the integrity of the conserved central domain of the RNA-binding protein Nhp2p
Nucl. Acids Res. 2001 29: 2733-2746; doi:10.1093/nar/29.13.2733 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Frédérique Barloy-Hubler, Valérie Lelaure, and Francis Galibert

Ribosomal protein gene cluster analysis in eubacterium genomics: homology between Sinorhizobium meliloti strain 1021 and Bacillus subtilis
Nucl. Acids Res. 2001 29: 2747-2756; doi:10.1093/nar/29.13.2747 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Frédéric Freund, Florence Boulmé, Simon Litvak, and Laura Tarrago-Litvak

Initiation of HIV-2 reverse transcription: a secondary structure model of the RNA–tRNA^Lys3 duplex
Nucl. Acids Res. 2001 29: 2757-2765; doi:10.1093/nar/29.13.2757 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Majid Fardaei, Ken Larkin, J. David Brook, and Marion G. Hamshere

In vivo co-localisation of MBNL protein with DMPK expanded-repeat transcripts
Nucl. Acids Res. 2001 29: 2766-2771; doi:10.1093/nar/29.13.2766 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Scott J. Garforth, Dipak Patel, Min Feng, and Jon R. Sayers

Unusually wide co-factor tolerance in a metalloenzyme; divalent metal ions modulate endo–exonuclease activity in T5 exonuclease
Nucl. Acids Res. 2001 29: 2772-2779; doi:10.1093/nar/29.13.2772 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Tomoko Kuwabara, Masaki Warashina, Shiori Koseki, Masayuki Sano, Jun Ohkawa, Kazuhisa Nakayama, and Kazunari Taira

Significantly higher activity of a cytoplasmic hammerhead ribozyme than a corresponding nuclear counterpart: engineered tRNAs with an extended 3' end can be exported efficiently and specifically to the cytoplasm in mammalian cells
Nucl. Acids Res. 2001 29: 2780-2788; doi:10.1093/nar/29.13.2780 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

David L. Crowe, Dan C. Nguyen, Kenneth J. Tsang, and Satoru Kyo

E2F-1 represses transcription of the human telomerase reverse transcriptase gene
Nucl. Acids Res. 2001 29: 2789-2794; doi:10.1093/nar/29.13.2789 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Besik I. Kankia, Vitaly Buckin, and Victor A. Bloomfield

Hexamminecobalt(III)-induced condensation of calf thymus DNA: circular dichroism and hydration measurements
Nucl. Acids Res. 2001 29: 2795-2801; doi:10.1093/nar/29.13.2795 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Istvan Boldogh, Daun Milligan, Myung Soog Lee, Heather Bassett, R. Stephen Lloyd, and Amanda K. McCullough

hMYH cell cycle-dependent expression, subcellular localization and association with replication foci: evidence suggesting replication-coupled repair of adenine:8-oxoguanine mispairs
Nucl. Acids Res. 2001 29: 2802-2809; doi:10.1093/nar/29.13.2802 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Deqi Huang, Maarit Jokela, Jussi Tuusa, Sven Skog, Kari Poikonen, and Juhani E. Syväoja

E2F mediates induction of the Sp1-controlled promoter of the human DNA polymerase B-subunit gene POLE2
Nucl. Acids Res. 2001 29: 2810-2821; doi:10.1093/nar/29.13.2810 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ellen L. Shen and Daniel F. Bogenhagen

Developmentally-regulated packaging of mitochondrial DNA by the HMG-box protein mtTFA during Xenopus oogenesis
Nucl. Acids Res. 2001 29: 2822-2828; doi:10.1093/nar/29.13.2822 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Bindu Nanduri, Robert L. Eoff, Alan J. Tackett, and Kevin D. Raney

Measurement of steady-state kinetic parameters for DNA unwinding by the bacteriophage T4 Dda helicase: use of peptide nucleic acids to trap single-stranded DNA products of helicase reactions
Nucl. Acids Res. 2001 29: 2829-2835; doi:10.1093/nar/29.13.2829 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

So-Jung Choi, So-Youn Park, and Tae-Hee Han

14-3-3 associates with and activates the MEF2D transcription factor during muscle cell differentiation
Nucl. Acids Res. 2001 29: 2836-2842; doi:10.1093/nar/29.13.2836 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Payam Mohaghegh, Julia K. Karow, Robert M. Brosh, Jr, Vilhelm A. Bohr, and Ian D. Hickson

The Bloom’s and Werner’s syndrome proteins are DNA structure-specific helicases
Nucl. Acids Res. 2001 29: 2843-2849; doi:10.1093/nar/29.13.2843 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Barmak Modrek, Alissa Resch, Catherine Grasso, and Christopher Lee

Genome-wide detection of alternative splicing in expressed sequences of human genes
Nucl. Acids Res. 2001 29: 2850-2859; doi:10.1093/nar/29.13.2850 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Nicholas M. Luscombe, Roman A. Laskowski, and Janet M. Thornton

Amino acid–base interactions: a three-dimensional analysis of protein–DNA interactions at an atomic level
Nucl. Acids Res. 2001 29: 2860-2874; doi:10.1093/nar/29.13.2860 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Dongyu Guo, Xiaohua Wu, Deepak K. Rajpal, John-Stephen Taylor, and Zhigang Wang

Translesion synthesis by yeast DNA polymerase from templates containing lesions of ultraviolet radiation and acetylaminofluorene
Nucl. Acids Res. 2001 29: 2875-2883; doi:10.1093/nar/29.13.2875 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Paul Bertone, Yuval Kluger, Ning Lan, Deyou Zheng, Dinesh Christendat, Adelinda Yee, Aled M. Edwards, Cheryl H. Arrowsmith, Gaetano T. Montelione, and Mark Gerstein

SPINE: an integrated tracking database and data mining approach for identifying feasible targets in high-throughput structural proteomics
Nucl. Acids Res. 2001 29: 2884-2898; doi:10.1093/nar/29.13.2884 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

L. F. Agnez-Lima, R. L. Napolitano, R. P. P. Fuchs, P. Di Mascio, A. R. Muotri, and C. F. M. Menck

DNA repair and sequence context affect ¹O₂-induced mutagenesis in bacteria
Nucl. Acids Res. 2001 29: 2899-2903; doi:10.1093/nar/29.13.2899 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Fadi Abdi, E. Morton Bradbury, Norman Doggett, and Xian Chen

Rapid characterization of DNA oligomers and genotyping of single nucleotide polymorphism using nucleotide-specific mass tags
Nucl. Acids Res. 2001 29: e61; doi:10.1093/nar/29.13.e61 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Serena Bernacchi and Yves Mély

Exciton interaction in molecular beacons: a sensitive sensor for short range modifications of the nucleic acid structure
Nucl. Acids Res. 2001 29: e62; doi:10.1093/nar/29.13.e62 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Philippe Marc, Frédéric Devaux, and Claude Jacq

yMGV: a database for visualization and data mining of published genome-wide yeast expression data
Nucl. Acids Res. 2001 29: e63; doi:10.1093/nar/29.13.e63 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yumin Teng, Shirong Yu, and Raymond Waters

The mapping of nucleosomes and regulatory protein binding sites at the Saccharomyces cerevisiae MFA2 gene: a high resolution approach
Nucl. Acids Res. 2001 29: e64; doi:10.1093/nar/29.13.e64 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

C. Grunau, S. J. Clark, and A. Rosenthal

Bisulfite genomic sequencing: systematic investigation of critical experimental parameters
Nucl. Acids Res. 2001 29: e65; doi:10.1093/nar/29.13.e65 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yuzhi Zhang, Brendan D. Price, Sotirios Tetradis, Subrata Chakrabarti, Gautam Maulik, and G. Mike Makrigiorgos

Reproducible and inexpensive probe preparation for oligonucleotide arrays
Nucl. Acids Res. 2001 29: e66; doi:10.1093/nar/29.13.e66 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sonia Trigueros, Javier Arsuaga, Maria E. Vazquez, De Witt Sumners, and Joaquim Roca

Novel display of knotted DNA molecules by two-dimensional gel electrophoresis
Nucl. Acids Res. 2001 29: e67; doi:10.1093/nar/29.13.e67 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ina I. Vandenbroucke, Jo Vandesompele, Anne De Paepe, and Ludwine Messiaen

Quantification of splice variants using real-time PCR
Nucl. Acids Res. 2001 29: e68; doi:10.1093/nar/29.13.e68 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Katarina Lindroos, Ulrika Liljedahl, Mirja Raitio, and Ann-Christine Syvänen

Minisequencing on oligonucleotide microarrays: comparison of immobilisation chemistries
Nucl. Acids Res. 2001 29: e69; doi:10.1093/nar/29.13.e69 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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