Nucleic Acids Research

Articles:

Junji Kawakami, Hiroyuki Kamiya, Kyohko Yasuda, Hiroyoshi Fujiki, Hiroshi Kasai, and Naoki Sugimoto

Thermodynamic stability of base pairs between 2-hydroxyadenine and incoming nucleotides as a determinant of nucleotide incorporation specificity during replication
Nucl. Acids Res. 2001 29: 3289-3296; doi:10.1093/nar/29.16.3289 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Keita Miyoshi, Tokichi Miyakawa, and Keiko Mizuta

Repression of rRNA synthesis due to a secretory defect requires the C-terminal silencing domain of Rap1p in Saccharomyces cerevisiae
Nucl. Acids Res. 2001 29: 3297-3303; doi:10.1093/nar/29.16.3297 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ching-Tai Lin, Yi Lisa Lyu, Hai Xiao, Wei-Hsin Lin, and Jacqueline Whang-Peng

Suppression of gene amplification and chromosomal DNA integration by the DNA mismatch repair system
Nucl. Acids Res. 2001 29: 3304-3310; doi:10.1093/nar/29.16.3304 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jin Kim Montclare, Leslie S. Sloan, and Alanna Schepartz

Electrostatic control of half-site spacing preferences by the cyclic AMP response element-binding protein CREB
Nucl. Acids Res. 2001 29: 3311-3319; doi:10.1093/nar/29.16.3311 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Christophe Rocher, Renée Dalibart, Thierry Letellier, Gilles Précigoux, and Patrick Lestienne

Initiation of DNA replication by DNA polymerases from primers forming a triple helix
Nucl. Acids Res. 2001 29: 3320-3326; doi:10.1093/nar/29.16.3320 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Meike Hennecke, Marcin Kwissa, Karin Metzger, André Oumard, Andrea Kröger, Reinhold Schirmbeck, Jörg Reimann, and Hansjörg Hauser

Composition and arrangement of genes define the strength of IRES-driven translation in bicistronic mRNAs
Nucl. Acids Res. 2001 29: 3327-3334; doi:10.1093/nar/29.16.3327 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Martin A. Cohn, Iben Hjelmsø, Lai-Chu Wu, Per Guldberg, Eugene M. Lukanidin, and Eugene M. Tulchinsky

Characterization of Sp1, AP-1, CBF and KRC binding sites and minisatellite DNA as functional elements of the metastasis-associated mts1/S100A4 gene intronic enhancer
Nucl. Acids Res. 2001 29: 3335-3346; doi:10.1093/nar/29.16.3335 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Akira Murakami, Sanami Ishida, Jane Thurlow, Jean-Michel Revest, and Clive Dickson

SOX6 binds CtBP2 to repress transcription from the Fgf-3 promoter
Nucl. Acids Res. 2001 29: 3347-3355; doi:10.1093/nar/29.16.3347 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Brian M. Shewchuk, Nancy E. Cooke, and Stephen A. Liebhaber

The human growth hormone locus control region mediates long-distance transcriptional activation independent of nuclear matrix attachment regions
Nucl. Acids Res. 2001 29: 3356-3361; doi:10.1093/nar/29.16.3356 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Katalin Nadassy, Isabel Tomás-Oliveira, Ian Alberts, Joël Janin, and Shoshana J. Wodak

Standard atomic volumes in double-stranded DNA and packing in protein–DNA interfaces
Nucl. Acids Res. 2001 29: 3362-3376; doi:10.1093/nar/29.16.3362 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Baktisaran Raman, Corrado Guarnaccia, Katalin Nadassy, Sotir Zakhariev, Alessandro Pintar, Francesco Zanuttin, Dávid Frigyes, Cristina Acatrinei, Alessandro Vindigni, Gábor Pongor, and Sándor Pongor

N-arginine dimethylation modulates the interaction between a Gly/Arg-rich peptide from human nucleolin and nucleic acids
Nucl. Acids Res. 2001 29: 3377-3384; doi:10.1093/nar/29.16.3377 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

François Bachand, Ibtissem Triki, and Chantal Autexier

Human telomerase RNA–protein interactions
Nucl. Acids Res. 2001 29: 3385-3393; doi:10.1093/nar/29.16.3385 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jan Schäferkordt and Rolf Wagner

Effects of base change mutations within an Escherichia coli ribosomal RNA leader region on rRNA maturation and ribosome formation
Nucl. Acids Res. 2001 29: 3394-3403; doi:10.1093/nar/29.16.3394 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Robert W. Taylor, Theresa M. Wardell, Bernard A. Connolly, Douglass M. Turnbull, and Robert N. Lightowlers

Linked oligodeoxynucleotides show binding cooperativity and can selectively impair replication of deleted mitochondrial DNA templates
Nucl. Acids Res. 2001 29: 3404-3412; doi:10.1093/nar/29.16.3404 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Silvia T. Hoehn, Christopher J. Turner, and JoAnne Stubbe

Solution structure of an oligonucleotide containing an abasic site: evidence for an unusual deoxyribose conformation
Nucl. Acids Res. 2001 29: 3413-3423; doi:10.1093/nar/29.16.3413 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Katrin Gawlas and Hendrik G. Stunnenberg

Differential transcription of the orphan receptor RORß in nuclear extracts derived from Neuro2A and HeLa cells
Nucl. Acids Res. 2001 29: 3424-3432; doi:10.1093/nar/29.16.3424 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Naoko Murata-Kamiya and Hiroyuki Kamiya

Methylglyoxal, an endogenous aldehyde, crosslinks DNA polymerase and the substrate DNA
Nucl. Acids Res. 2001 29: 3433-3438; doi:10.1093/nar/29.16.3433 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Eric A. Miska, Emma Langley, Daniel Wolf, Christina Karlsson, Jon Pines, and Tony Kouzarides

Differential localization of HDAC4 orchestrates muscle differentiation
Nucl. Acids Res. 2001 29: 3439-3447; doi:10.1093/nar/29.16.3439 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yoshiaki Onishi and Ryoiti Kiyama

Enhancer activity of HS2 of the human ß-LCR is modulated by distance from the key nucleosome
Nucl. Acids Res. 2001 29: 3448-3457; doi:10.1093/nar/29.16.3448 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Stefanie Leuchtenberger, Angela Perz, Christiane Gatz, and Jörg W. Bartsch

Conditional cell ablation by stringent tetracycline-dependent regulation of barnase in mammalian cells
Nucl. Acids Res. 2001 29: e76; doi:10.1093/nar/29.16.e76 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Priscilla Wilkins Stevens, Jeff G. Hall, Victor Lyamichev, Bruce P. Neri, Manchun Lu, Liman Wang, Lloyd M. Smith, and David M. Kelso

Analysis of single nucleotide polymorphisms with solid phase invasive cleavage reactions
Nucl. Acids Res. 2001 29: e77; doi:10.1093/nar/29.16.e77 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Elzbieta Pastwa, Ronald D. Neumann, and Thomas A. Winters

In vitro repair of complex unligatable oxidatively induced DNA double-strand breaks by human cell extracts
Nucl. Acids Res. 2001 29: e78; doi:10.1093/nar/29.16.e78 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Shun-ichi Matsuura, Jun Komatsu, Ken Hirano, Hachiro Yasuda, Kazunori Takashima, Shinji Katsura, and Akira Mizuno

Real-time observation of a single DNA digestion by exonuclease under a fluorescence microscope field
Nucl. Acids Res. 2001 29: e79; doi:10.1093/nar/29.16.e79 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sandrine Prost, Sharon Sheahan, Dominic Rannie, and David J. Harrison

Adenovirus-mediated Cre deletion of floxed sequences in primary mouse cells is an efficient alternative for studies of gene deletion
Nucl. Acids Res. 2001 29: e80; doi:10.1093/nar/29.16.e80 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

A. Csáki, R. Möller, W. Straube, J. M. Köhler, and W. Fritzsche

DNA monolayer on gold substrates characterized by nanoparticle labeling and scanning force microscopy
Nucl. Acids Res. 2001 29: e81; doi:10.1093/nar/29.16.e81 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Andrew I. Schein, Jessica C. Kissinger, and Lyle H. Ungar

Chloroplast transit peptide prediction: a peek inside the black box
Nucl. Acids Res. 2001 29: e82; doi:10.1093/nar/29.16.e82 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Martin Angers, Jean-François Cloutier, André Castonguay, and Régen Drouin

Optimal conditions to use Pfu exo^– DNA polymerase for highly efficient ligation-mediated polymerase chain reaction protocols
Nucl. Acids Res. 2001 29: e83; doi:10.1093/nar/29.16.e83 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

C. Uematsu, J. Nishida, K. Okano, F. Miura, T. Ito, Y. Sakaki, and H. Kambara

Multiplex polymerase chain reaction (PCR) with color-tagged module-shuffling primers for comparing gene expression levels in various cells
Nucl. Acids Res. 2001 29: e84; doi:10.1093/nar/29.16.e84 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Carolyn Gonzalez, Megan Moore, Sofia Ribeiro, Uli Schmitz, Gary P. Schroth, Lisa Turin, and Thomas W. Bruice

The hybridization-stabilization assay: a solution-based isothermal method for rapid screening and determination of sequence preference of ligands that bind to duplexed nucleic acids
Nucl. Acids Res. 2001 29: e85; doi:10.1093/nar/29.16.e85 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Corrigendum:

Nucl. Acids Res. 2001 29: 0; doi:10.1093/nar/29.16.0 [Print PDF] [Request Permissions]  

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