Nucleic Acids Research

Survey and Summary:

Sam Lievens, Sofie Goormachtig, and Marcelle Holsters

A critical evaluation of differential display as a tool to identify genes involved in legume nodulation: looking back and looking forward
Nucl. Acids Res. 2001 29: 3459-3468; doi:10.1093/nar/29.17.3459 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Articles:

Tulasiram Prathapam, Christian Kühne, Michael Hayman, and Lawrence Banks

Ski interacts with the evolutionarily conserved SNW domain of Skip
Nucl. Acids Res. 2001 29: 3469-3476; doi:10.1093/nar/29.17.3469 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Erwin L. van Dijk, John S. Sussenbach, and P. Elly Holthuizen

Kinetics and regulation of site-specific endonucleolytic cleavage of human IGF-II mRNAs
Nucl. Acids Res. 2001 29: 3477-3486; doi:10.1093/nar/29.17.3477 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Helle D. Ulrich

The srs2 suppressor of UV sensitivity acts specifically on the RAD5- and MMS2-dependent branch of the RAD6 pathway
Nucl. Acids Res. 2001 29: 3487-3494; doi:10.1093/nar/29.17.3487 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Alain Bailly, Maria Elena Torres-Padilla, Antoine P. Tinel, and Mary C. Weiss

An enhancer element 6 kb upstream of the mouse HNF41 promoter is activated by glucocorticoids and liver-enriched transcription factors
Nucl. Acids Res. 2001 29: 3495-3505; doi:10.1093/nar/29.17.3495 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Asako Aoki, Isao Suetake, Junichi Miyagawa, Takayuki Fujio, Takahito Chijiwa, Hiroyuki Sasaki, and Shoji Tajima

Enzymatic properties of de novo-type mouse DNA (cytosine-5) methyltransferases
Nucl. Acids Res. 2001 29: 3506-3512; doi:10.1093/nar/29.17.3506 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Andrei Grigoriev

A relationship between gene expression and protein interactions on the proteome scale: analysis of the bacteriophage T7 and the yeast Saccharomyces cerevisiae
Nucl. Acids Res. 2001 29: 3513-3519; doi:10.1093/nar/29.17.3513 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Tina M. Avolio-Hunter, Peter N. Lewis, and Lori Frappier

Epstein–Barr nuclear antigen 1 binds and destabilizes nucleosomes at the viral origin of latent DNA replication
Nucl. Acids Res. 2001 29: 3520-3528; doi:10.1093/nar/29.17.3520 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ching-Tai Lin, Wei-Hsin Lin, Yi Lisa Lyu, and Jacqueline Whang-Peng

Inverted repeats as genetic elements for promoting DNA inverted duplication: implications in gene amplification
Nucl. Acids Res. 2001 29: 3529-3538; doi:10.1093/nar/29.17.3529 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Paolo Licciardo, Luca Ruggiero, Luigi Lania, and Barbara Majello

Transcription activation by targeted recruitment of the RNA polymerase II CTD phosphatase FCP1
Nucl. Acids Res. 2001 29: 3539-3545; doi:10.1093/nar/29.17.3539 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Stine Bergholtz, Tor Øyvind Andersen, Kristin B. Andersson, Jørgen Borrebæk, Bernhard Lüscher, and Odd S. Gabrielsen

The highly conserved DNA-binding domains of A-, B- and c-Myb differ with respect to DNA-binding, phosphorylation and redox properties
Nucl. Acids Res. 2001 29: 3546-3556; doi:10.1093/nar/29.17.3546 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Richard B. Jones, Russ P. Carstens, Yongde Luo, and Wallace L. McKeehan

5'- and 3'-terminal nucleotides in the FGFR2 ISAR splicing element core have overlapping roles in exon IIIb activation and exon IIIc repression
Nucl. Acids Res. 2001 29: 3557-3565; doi:10.1093/nar/29.17.3557 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Lei Zhang, Angela Dawson, and David J. Finnegan

DNA-binding activity and subunit interaction of the mariner transposase
Nucl. Acids Res. 2001 29: 3566-3575; doi:10.1093/nar/29.17.3566 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Robert Tayon, Jr, Min-Ju Kim, and C. Cheng Kao

Completion of RNA synthesis by viral RNA replicases
Nucl. Acids Res. 2001 29: 3576-3582; doi:10.1093/nar/29.17.3576 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Elena A. Lesnik, Rangarajan Sampath, Harold B. Levene, Timothy J. Henderson, John A. McNeil, and David J. Ecker

Prediction of rho-independent transcriptional terminators in Escherichia coli
Nucl. Acids Res. 2001 29: 3583-3594; doi:10.1093/nar/29.17.3583 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Jung W. Park, Patricia G. Voss, Sharon Grabski, John L. Wang, and Ronald J. Patterson

Association of galectin-1 and galectin-3 with Gemin4 in complexes containing the SMN protein
Nucl. Acids Res. 2001 29: 3595-3602; doi:10.1093/nar/29.17.3595 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Don Benjamin and Jean-Pierre Jost

Reversal of methylation-mediated repression with short-chain fatty acids: evidence for an additional mechanism to histone deacetylation
Nucl. Acids Res. 2001 29: 3603-3610; doi:10.1093/nar/29.17.3603 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Elena Kostenko, Mikhail Dobrikov, Dmitrii Pyshnyi, Vladislav Petyuk, Nina Komarova, Valentin Vlassov, and Marina Zenkova

5'-bis-pyrenylated oligonucleotides displaying excimer fluorescence provide sensitive probes of RNA sequence and structure
Nucl. Acids Res. 2001 29: 3611-3620; doi:10.1093/nar/29.17.3611 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Dimitri G. Pestov, Michael G. Stockelman, Zaklina Strezoska, and Lester F. Lau

ERB1, the yeast homolog of mammalian Bop1, is an essential gene required for maturation of the 25S and 5.8S ribosomal RNAs
Nucl. Acids Res. 2001 29: 3621-3630; doi:10.1093/nar/29.17.3621 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Vilius Stribinskis, Guo-Jian Gao, Pavol Sulo, Steven R. Ellis, and Nancy C. Martin

Rpm2p: separate domains promote tRNA and Rpm1r maturation in Saccharomyces cerevisiae mitochondria
Nucl. Acids Res. 2001 29: 3631-3637; doi:10.1093/nar/29.17.3631 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ana Maria Soto, Besik I. Kankia, Prasad Dande, Barry Gold, and Luis A. Marky

Incorporation of a cationic aminopropyl chain in DNA hairpins: thermodynamics and hydration
Nucl. Acids Res. 2001 29: 3638-3645; doi:10.1093/nar/29.17.3638 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Takahiro Hohsaka, Yuki Ashizuka, Hiroshi Murakami, and Masahiko Sisido

Five-base codons for incorporation of nonnatural amino acids into proteins
Nucl. Acids Res. 2001 29: 3646-3651; doi:10.1093/nar/29.17.3646 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Uraiwan Puapaiboon, Jaran Jai-nhuknan, and J. A. Cowan

Characterization of a multi-functional metal-mediated nuclease by MALDI-TOF mass spectrometry
Nucl. Acids Res. 2001 29: 3652-3656; doi:10.1093/nar/29.17.3652 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sven Gensler, Katharina Weber, Wolfgang E. Schmitt, Acisclo Pérez-Martos, J. Antonio Enriquez, Julio Montoya, and Rudolf J. Wiesner

Mechanism of mammalian mitochondrial DNA replication: import of mitochondrial transcription factor A into isolated mitochondria stimulates 7S DNA synthesis
Nucl. Acids Res. 2001 29: 3657-3663; doi:10.1093/nar/29.17.3657 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

B. H. Lloyd, R. V. Giles, D. G. Spiller, J. Grzybowski, D. M. Tidd, and D. R. Sibson

Determination of optimal sites of antisense oligonucleotide cleavage within TNF mRNA
Nucl. Acids Res. 2001 29: 3664-3673; doi:10.1093/nar/29.17.3664 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Andriy A. Mokhir, William H. Connors, and Clemens Richert

Synthesis and monitored selection of nucleotide surrogates for binding T:A base pairs in homopurine–homopyrimidine DNA triple helices
Nucl. Acids Res. 2001 29: 3674-3684; doi:10.1093/nar/29.17.3674 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Alejandro Ferrando, Zsuzsana Koncz-Kálmán, Rosa Farràs, Antonio Tiburcio, Jeff Schell, and Csaba Koncz

Detection of in vivo protein interactions between Snf1-related kinase subunits with intron-tagged epitope-labelling in plants cells
Nucl. Acids Res. 2001 29: 3685-3693; doi:10.1093/nar/29.17.3685 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Eric A. Murphy, Alan J. Waring, Jason C. Murphy, Richard C. Willson, and Kenneth J. Longmuir

Development of an effective gene delivery system: a study of complexes composed of a peptide-based amphiphilic DNA compaction agent and phospholipid
Nucl. Acids Res. 2001 29: 3694-3704; doi:10.1093/nar/29.17.3694 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Vishva Mitra Sharma, Rohini Chopra, Indrani Ghosh, and K. Ganesan

Quantitative target display: a method to screen yeast mutants conferring quantitative phenotypes by ‘mutant DNA fingerprints’
Nucl. Acids Res. 2001 29: e86; doi:10.1093/nar/29.17.e86 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

F. Lecerf, L. Foggia, P. Mulsant, A. Bonnet, and F. Hatey

A novel method to isolate the common fraction of two DNA samples: hybrid specific amplification (HSA)
Nucl. Acids Res. 2001 29: e87; doi:10.1093/nar/29.17.e87 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Shu Ye, Sahar Dhillon, Xiayi Ke, Andrew R. Collins, and Ian N. M. Day

An efficient procedure for genotyping single nucleotide polymorphisms
Nucl. Acids Res. 2001 29: e88; doi:10.1093/nar/29.17.e88 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

C. Molenaar, S. A. Marras, J. C. M. Slats, J.-C. Truffert, M. Lemaître, A. K. Raap, R. W. Dirks, and H. J. Tanke

Linear 2' O-Methyl RNA probes for the visualization of RNA in living cells
Nucl. Acids Res. 2001 29: e89; doi:10.1093/nar/29.17.e89 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Anatoly V. Lichtenstein, Ol’ga I. Serdjuk, Tatjana I. Sukhova, Hovsep S. Melkonyan, and Samuil R. Umansky

Selective ‘stencil’-aided pre-PCR cleavage of wild-type sequences as a novel approach to detection of mutant K-RAS
Nucl. Acids Res. 2001 29: e90; doi:10.1093/nar/29.17.e90 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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