Nucleic Acids Research

Obituary:

Obituary
Nucl. Acids Res. 2001 29: 0; doi:10.1093/nar/29.19.0 [Print PDF] [Request Permissions]  

Articles:

Gregor Meiss, Sebastian Richard Scholz, Christian Korn, Oleg Gimadutdinow, and Alfred Pingoud

Identification of functionally relevant histidine residues in the apoptotic nuclease CAD
Nucl. Acids Res. 2001 29: 3901-3909; doi:10.1093/nar/29.19.3901 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Carmen Burkhardt and Martin Zacharias

Modelling ion binding to AA platform motifs in RNA: a continuum solvent study including conformational adaptation
Nucl. Acids Res. 2001 29: 3910-3918; doi:10.1093/nar/29.19.3910 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Steven M. Ogbourne and Toni M. Antalis

Characterisation of PAUSE-1, a powerful silencer in the human plasminogen activator inhibitor type 2 gene promoter
Nucl. Acids Res. 2001 29: 3919-3927; doi:10.1093/nar/29.19.3919 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Richard J. Carter, Inna Dubchak, and Stephen R. Holbrook

A computational approach to identify genes for functional RNAs in genomic sequences
Nucl. Acids Res. 2001 29: 3928-3938; doi:10.1093/nar/29.19.3928 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Dujin Zhou and Shiuan Chen

PNRC2 is a 16 kDa coactivator that interacts with nuclear receptors through an SH3-binding motif
Nucl. Acids Res. 2001 29: 3939-3948; doi:10.1093/nar/29.19.3939 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

M. Tofazzal Hossain, Tomoko Sunami, Masaru Tsunoda, Takaaki Hikima, Toshiyuki Chatake, Yoshihito Ueno, Akira Matsuda, and Akio Takénaka

Crystallographic studies on damaged DNAs IV. N ⁴-methoxycytosine shows a second face for Watson–Crick base-pairing, leading to purine transition mutagenesis
Nucl. Acids Res. 2001 29: 3949-3954; doi:10.1093/nar/29.19.3949 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Dominic Esposito, Julia S. Thrower, and John J. Scocca

Protein and DNA requirements of the bacteriophage HP1 recombination system: a model for intasome formation
Nucl. Acids Res. 2001 29: 3955-3964; doi:10.1093/nar/29.19.3955 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Peter Sazani, Shin-Hong Kang, Martin A. Maier, Changfu Wei, Jennifer Dillman, James Summerton, Muthiah Manoharan, and Ryszard Kole

Nuclear antisense effects of neutral, anionic and cationic oligonucleotide analogs
Nucl. Acids Res. 2001 29: 3965-3974; doi:10.1093/nar/29.19.3965 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yunfu Lin and Alan S. Waldman

Promiscuous patching of broken chromosomes in mammalian cells with extrachromosomal DNA
Nucl. Acids Res. 2001 29: 3975-3981; doi:10.1093/nar/29.19.3975 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Alim Seit-Nebi, Ludmila Frolova, Just Justesen, and Lev Kisselev

Class-1 translation termination factors: invariant GGQ minidomain is essential for release activity and ribosome binding but not for stop codon recognition
Nucl. Acids Res. 2001 29: 3982-3987; doi:10.1093/nar/29.19.3982 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Wataru Fujibuchi, John S. J. Anderson, and David Landsman

PROSPECT improves cis-acting regulatory element prediction by integrating expression profile data with consensus pattern searches
Nucl. Acids Res. 2001 29: 3988-3996; doi:10.1093/nar/29.19.3988 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ronald Micura, Werner Pils, Claudia Höbartner, Karl Grubmayr, Marc-Olivier Ebert, and Bernhard Jaun

Methylation of the nucleobases in RNA oligonucleotides mediates duplex–hairpin conversion
Nucl. Acids Res. 2001 29: 3997-4005; doi:10.1093/nar/29.19.3997 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Aaron Levine and Richard Durbin

A computational scan for U12-dependent introns in the human genome sequence
Nucl. Acids Res. 2001 29: 4006-4013; doi:10.1093/nar/29.19.4006 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Nicholas J. Holton, Timothy J. D. Goodwin, Margaret I. Butler, and Russell T. M. Poulter

An active retrotransposon in Candida albicans
Nucl. Acids Res. 2001 29: 4014-4024; doi:10.1093/nar/29.19.4014 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

David M. Noll and Neil D. Clarke

Covalent capture of a human O⁶-alkylguanine alkyltransferase–DNA complex using N¹,O⁶-ethanoxanthosine, a mechanism-based crosslinker
Nucl. Acids Res. 2001 29: 4025-4034; doi:10.1093/nar/29.19.4025 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Antonio del Castillo-Olivares and Gregorio Gil

Suppression of sterol 12-hydroxylase transcription by the short heterodimer partner: insights into the repression mechanism
Nucl. Acids Res. 2001 29: 4035-4042; doi:10.1093/nar/29.19.4035 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ilya Freidkin and Don J. Katcoff

Specific distribution of the Saccharomyces cerevisiae linker histone homolog HHO1p in the chromatin
Nucl. Acids Res. 2001 29: 4043-4051; doi:10.1093/nar/29.19.4043 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Delisha A. Stewart, Shelia D. Thomas, Charles A. Mayfield, and Donald M. Miller

Psoralen-modified clamp-forming antisense oligonucleotides reduce cellular c-Myc protein expression and B16-F0 proliferation
Nucl. Acids Res. 2001 29: 4052-4061; doi:10.1093/nar/29.19.4052 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Valeri G. Metelev, Oxana A. Borisova, Eugene M. Volkov, Tatiana S. Oretskaya, and Nina G. Dolinnaya

New chemically reactive dsDNAs containing single internucleotide monophosphoryldithio links: reactivity of 5'-mercapto-oligodeoxyribonucleotides
Nucl. Acids Res. 2001 29: 4062-4069; doi:10.1093/nar/29.19.4062 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jessica B. Zheng, Yi-Hong Zhou, Tapati Maity, Warren S.-L. Liao, and Grady F. Saunders

Activation of the human PAX6 gene through the exon 1 enhancer by transcription factors SEF and Sp1
Nucl. Acids Res. 2001 29: 4070-4078; doi:10.1093/nar/29.19.4070 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kazuhiro Shigemoto, Jane Brennan, Elizabeth Walls, Christine J. Watson, David Stott, Peter W. J. Rigby, and Alastair D. Reith

Identification and characterisation of a developmentally regulated mammalian gene that utilises –1 programmed ribosomal frameshifting
Nucl. Acids Res. 2001 29: 4079-4088; doi:10.1093/nar/29.19.4079 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Vladimir Baumruk, Catherine Gouyette, Tam Huynh-Dinh, Jian-Sheng Sun, and Mahmoud Ghomi

Comparison between CUUG and UUCG tetraloops: thermodynamic stability and structural features analyzed by UV absorption and vibrational spectroscopy
Nucl. Acids Res. 2001 29: 4089-4096; doi:10.1093/nar/29.19.4089 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Mona Shahgholi, Benjamin A. Garcia, Norman H. L. Chiu, Paul J. Heaney, and Kai Tang

Sugar additives for MALDI matrices improve signal allowing the smallest nucleotide change (A:T) in a DNA sequence to be resolved
Nucl. Acids Res. 2001 29: e91; doi:10.1093/nar/29.19.e91 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Natalia E. Broude, Karen Woodward, Robert Cavallo, Charles R. Cantor, and David Englert

DNA microarrays with stem–loop DNA probes: preparation and applications
Nucl. Acids Res. 2001 29: e92; doi:10.1093/nar/29.19.e92 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Guo-hua Zhou, Masao Kamahori, Kazunori Okano, Gao Chuan, Kunio Harada, and Hideki Kambara

Quantitative detection of single nucleotide polymorphisms for a pooled sample by a bioluminometric assay coupled with modified primer extension reactions (BAMPER)
Nucl. Acids Res. 2001 29: e93; doi:10.1093/nar/29.19.e93 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Martin Krüger, Carmela Beger, Peter J. Welch, Jack R. Barber, and Flossie Wong-Staal

C-SPACE (cleavage-specific amplification of cDNA ends): a novel method of ribozyme-mediated gene identification
Nucl. Acids Res. 2001 29: e94; doi:10.1093/nar/29.19.e94 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

D. Ross Sibson and Fiona E. M. Gibbs

Molecular indexing of human genomic DNA
Nucl. Acids Res. 2001 29: e95; doi:10.1093/nar/29.19.e95 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Corrigendum:

Corrigendum
Nucl. Acids Res. 2001 29: a; doi:10.1093/nar/29.19.0a [Print PDF] [Request Permissions]  

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