Nucleic Acids Research

Articles:

Stephen F. Altschul, Ralf Bundschuh, Rolf Olsen, and Terence Hwa

The estimation of statistical parameters for local alignment score distributions
Nucl. Acids Res. 2001 29: 351-361; doi:10.1093/nar/29.2.351 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Feray Tura Kockar, Pelagia Foka, Timothy R. Hughes, Stavroula Kousteni, and Dipak P. Ramji

Analysis of the Xenopus laevis CCAAT-enhancer binding protein gene promoter demonstrates species-specific differences in the mechanisms for both auto-activation and regulation by Sp1
Nucl. Acids Res. 2001 29: 362-372; doi:10.1093/nar/29.2.362 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Dmitry M. Kolpashchikov, Svetlana N. Khodyreva, Denis Yu. Khlimankov, Marc S. Wold, Alain Favre, and Olga I. Lavrik

Polarity of human replication protein A binding to DNA
Nucl. Acids Res. 2001 29: 373-379; doi:10.1093/nar/29.2.373 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jesús Ramírez-Santos, Julio Collado-Vides, Martin García-Varela, and M. Carmen Gómez-Eichelmann

Conserved regulatory elements of the promoter sequence of the gene rpoH of enteric bacteria
Nucl. Acids Res. 2001 29: 380-386; doi:10.1093/nar/29.2.380 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yi Pei, Beate Schwer, Stéphane Hausmann, and Stewart Shuman

Characterization of Schizosaccharomyces pombe RNA triphosphatase
Nucl. Acids Res. 2001 29: 387-396; doi:10.1093/nar/29.2.387 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Marino Schuhmacher, Franz Kohlhuber, Michael Hölzel, Carmen Kaiser, Helmut Burtscher, Michael Jarsch, Georg W. Bornkamm, Gerhard Laux, Axel Polack, Ulrich H. Weidle, and Dirk Eick

The transcriptional program of a human B cell line in response to Myc
Nucl. Acids Res. 2001 29: 397-406; doi:10.1093/nar/29.2.397 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Radhika Venkhataraman, Carlton D. Donald, Robindra Roy, Ho Jin You, Paul W. Doetsch, and Yoke W. Kow

Enzymatic processing of DNA containing tandem dihydrouracil by endonucleases III and VIII
Nucl. Acids Res. 2001 29: 407-414; doi:10.1093/nar/29.2.407 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

John C. Schmitz, Dong Yu, Sudhir Agrawal, and Edward Chu

Effect of 2'-O-methyl antisense ORNs on expression of thymidylate synthase in human colon cancer RKO cells
Nucl. Acids Res. 2001 29: 415-422; doi:10.1093/nar/29.2.415 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Petr Jansa, Christof Burek, Eva E. Sander, and Ingrid Grummt

The transcript release factor PTRF augments ribosomal gene transcription by facilitating reinitiation of RNA polymerase I
Nucl. Acids Res. 2001 29: 423-429; doi:10.1093/nar/29.2.423 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jeff W. Hill, Tapas K. Hazra, Tadahide Izumi, and Sankar Mitra

Stimulation of human 8-oxoguanine-DNA glycosylase by AP-endonuclease: potential coordination of the initial steps in base excision repair
Nucl. Acids Res. 2001 29: 430-438; doi:10.1093/nar/29.2.430 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Aiping Dong, Jeffrey A. Yoder, Xing Zhang, Lan Zhou, Timothy H. Bestor, and Xiaodong Cheng

Structure of human DNMT2, an enigmatic DNA methyltransferase homolog that displays denaturant-resistant binding to DNA
Nucl. Acids Res. 2001 29: 439-448; doi:10.1093/nar/29.2.439 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Katsuyoshi Fujikawa, Hiroyuki Kamiya, Hiroyuki Yakushiji, Yusaku Nakabeppu, and Hiroshi Kasai

Human MTH1 protein hydrolyzes the oxidized ribonucleotide, 2-hydroxy-ATP
Nucl. Acids Res. 2001 29: 449-454; doi:10.1093/nar/29.2.449 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Luc Jaeger, Eric Westhof, and Neocles B. Leontis

TectoRNA: modular assembly units for the construction of RNA nano-objects
Nucl. Acids Res. 2001 29: 455-463; doi:10.1093/nar/29.2.455 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Sandrine Jacquenet, Delphine Ropers, Patricia S. Bilodeau, Laurence Damier, Annie Mougin, C. Martin Stoltzfus, and Christiane Branlant

Conserved stem–loop structures in the HIV-1 RNA region containing the A3 3' splice site and its cis-regulatory element: possible involvement in RNA splicing
Nucl. Acids Res. 2001 29: 464-478; doi:10.1093/nar/29.2.464 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Victoria Drewett, Henrik Molina, Alan Millar, Silke Muller, Friedrich von Hesler, and Peter E. Shaw

DNA-bound transcription factor complexes analysed by mass-spectrometry: binding of novel proteins to the human c-fos SRE and related sequences
Nucl. Acids Res. 2001 29: 479-487; doi:10.1093/nar/29.2.479 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jeffrey S. Fillingham, Deanna Bruno, and Ronald E. Pearlman

Cis-acting requirements in flanking DNA for the programmed elimination of mse2.9: a common mechanism for deletion of internal eliminated sequences from the developing macronucleus of Tetrahymena thermophila
Nucl. Acids Res. 2001 29: 488-498; doi:10.1093/nar/29.2.488 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Purnima Khandelwal, S. C. Panchal, P. K. Radha, and R. V. Hosur

Solution structure and dynamics of GCN4 cognate DNA: NMR investigations
Nucl. Acids Res. 2001 29: 499-505; doi:10.1093/nar/29.2.499 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Jacqueline Plumbridge

DNA binding sites for the Mlc and NagC proteins: regulation of nagE, encoding the N-acetylglucosamine-specific transporter in Escherichia coli
Nucl. Acids Res. 2001 29: 506-514; doi:10.1093/nar/29.2.506 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Johannes Lengler, Eberhard Krausz, Stanislav Tomarev, Alan Prescott, Roy A. Quinlan, and Jochen Graw

Antagonistic action of Six3 and Prox1 at the -crystallin promoter
Nucl. Acids Res. 2001 29: 515-526; doi:10.1093/nar/29.2.515 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Benoît Pinson, Elen M. Brendeford, Odd S. Gabrielsen, and Bertrand Daignan-Fornier

Highly conserved features of DNA binding between two divergent members of the Myb family of transcription factors
Nucl. Acids Res. 2001 29: 527-535; doi:10.1093/nar/29.2.527 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Arianna Tocchetti, Stefania Serina, Ilaria Oliva, Gianni Dehò, and Daniela Ghisotti

Cnr interferes with dimerization of the replication protein in phage-plasmid P4
Nucl. Acids Res. 2001 29: 536-544; doi:10.1093/nar/29.2.536 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Thomas Sicheritz-Pontén and Siv G. E. Andersson

A phylogenomic approach to microbial evolution
Nucl. Acids Res. 2001 29: 545-552; doi:10.1093/nar/29.2.545 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Nikolas H. Chmiel, Marie-Pierre Golinelli, Anthony W. Francis, and Sheila S. David

Efficient recognition of substrates and substrate analogs by the adenine glycosylase MutY requires the C-terminal domain
Nucl. Acids Res. 2001 29: 553-564; doi:10.1093/nar/29.2.553 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Alan J. Tackett, Lai Wei, Craig E. Cameron, and Kevin D. Raney

Unwinding of nucleic acids by HCV NS3 helicase is sensitive to the structure of the duplex
Nucl. Acids Res. 2001 29: 565-572; doi:10.1093/nar/29.2.565 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Gregory J. Cost, Amit Golding, Mark S. Schlissel, and Jef D. Boeke

Target DNA chromatinization modulates nicking by L1 endonuclease
Nucl. Acids Res. 2001 29: 573-577; doi:10.1093/nar/29.2.573 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Mats Nilsson, Dan-Oscar Antson, Gisela Barbany, and Ulf Landegren

RNA-templated DNA ligation for transcript analysis
Nucl. Acids Res. 2001 29: 578-581; doi:10.1093/nar/29.2.578 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Robert G. Halgren, Mark R. Fielden, Cora J. Fong, and Timothy R. Zacharewski

Assessment of clone identity and sequence fidelity for 1189 IMAGE cDNA clones
Nucl. Acids Res. 2001 29: 582-588; doi:10.1093/nar/29.2.582 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Clare Freeman Emmerson, G. K. Brown, and J. Poulton

Synthesis of mitochondrial DNA in permeabilised human cultured cells
Nucl. Acids Res. 2001 29: e1; doi:10.1093/nar/29.2.e1 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Anil Kumar and Zicai Liang

Chemical nanoprinting: a novel method for fabricating DNA microchips
Nucl. Acids Res. 2001 29: e2; doi:10.1093/nar/29.2.e2 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Istvan Szatmari and Janos Aradi

Telomeric repeat amplification, without shortening or lengthening of the telomerase products: a method to analyze the processivity of telomerase enzyme
Nucl. Acids Res. 2001 29: e3; doi:10.1093/nar/29.2.e3 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Chatchawan Srisawat, Irwin J. Goldstein, and David R. Engelke

Sephadex-binding RNA ligands: rapid affinity purification of RNA from complex RNA mixtures
Nucl. Acids Res. 2001 29: e4; doi:10.1093/nar/29.2.e4 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Pascale Gaudet, Harry MacWilliams, and Adrian Tsang

Inducible expression of exogenous genes in Dictyostelium discoideum using the ribonucleotide reductase promoter
Nucl. Acids Res. 2001 29: e5; doi:10.1093/nar/29.2.e5 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Xiaofeng Zheng and Philip C. Bevilacqua

Efficient construction of long DNA duplexes with internal non-Watson–Crick motifs and modifications
Nucl. Acids Res. 2001 29: e6; doi:10.1093/nar/29.2.e6 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Arezou Azarani and Karl H. Hecker

RNA analysis by ion-pair reversed-phase high performance liquid chromatography
Nucl. Acids Res. 2001 29: e7; doi:10.1093/nar/29.2.e7 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Martin Laging, Berthold Fartmann, and Wilfried Kramer

Isolation of segments of homologous genes with only one conserved amino acid region via PCR
Nucl. Acids Res. 2001 29: e8; doi:10.1093/nar/29.2.e8 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Corrigendum:

Corrigendum
Nucl. Acids Res. 2001 29: 0; doi:10.1093/nar/29.2.0 [Print PDF] [Request Permissions]  

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