Nucleic Acids Research

Articles:

Amy Ziemba, L. Chris Derosier, Russell Methvin, Chun-Yan Song, Eric Clary, Wendy Kahn, David Milesi, Vladimir Gorn, Mike Reed, and Scot Ebbinghaus

Repair of triplex-directed DNA alkylation by nucleotide excision repair
Nucl. Acids Res. 2001 29: 4257-4263; doi:10.1093/nar/29.21.4257 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Borja Ibarra, José María Valpuesta, and José L. Carrascosa

Purification and functional characterization of p16, the ATPase of the bacteriophage 29 packaging machinery
Nucl. Acids Res. 2001 29: 4264-4273; doi:10.1093/nar/29.21.4264 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Wafaa Takash, Joaquin Cañizares, Nathalie Bonneaud, Francis Poulat, Marie-Geneviève Mattéi, Philippe Jay, and Philippe Berta

SOX7 transcription factor: sequence, chromosomal localisation, expression, transactivation and interference with Wnt signalling
Nucl. Acids Res. 2001 29: 4274-4283; doi:10.1093/nar/29.21.4274 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Alexei Yu. Denisov, Anne M. Noronha, Christopher J. Wilds, Jean-François Trempe, Richard T. Pon, Kalle Gehring, and Masad J. Damha

Solution structure of an arabinonucleic acid (ANA)/RNA duplex in a chimeric hairpin: comparison with 2'-fluoro-ANA/RNA and DNA/RNA hybrids
Nucl. Acids Res. 2001 29: 4284-4293; doi:10.1093/nar/29.21.4284 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Irene Nobeli, Roman A. Laskowski, William S. J. Valdar, and Janet M. Thornton

On the molecular discrimination between adenine and guanine by proteins
Nucl. Acids Res. 2001 29: 4294-4309; doi:10.1093/nar/29.21.4294 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Isabelle Saves, Fabrice Westrelin, Mamadou Daffé, and Jean-Michel Masson

Identification of the first eubacterial endonuclease coded by an intein allele in the pps1 gene of mycobacteria
Nucl. Acids Res. 2001 29: 4310-4318; doi:10.1093/nar/29.21.4310 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Lars O. Baumbusch, Tage Thorstensen, Veiko Krauss, Andreas Fischer, Kathrin Naumann, Reza Assalkhou, Ingo Schulz, Gunter Reuter, and Reidunn B. Aalen

The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes
Nucl. Acids Res. 2001 29: 4319-4333; doi:10.1093/nar/29.21.4319 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Louis Levinger, Obasanjo Jacobs, and Melissa James

In vitro 3'-end endonucleolytic processing defect in a human mitochondrial tRNA^Ser(UCN) precursor with the U7445C substitution, which causes non-syndromic deafness
Nucl. Acids Res. 2001 29: 4334-4340; doi:10.1093/nar/29.21.4334 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Céline Jousse, Alain Bruhat, Valérie Carraro, Fumihiko Urano, Marc Ferrara, David Ron, and Pierre Fafournoux

Inhibition of CHOP translation by a peptide encoded by an open reading frame localized in the chop 5'UTR
Nucl. Acids Res. 2001 29: 4341-4351; doi:10.1093/nar/29.21.4341 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Perry M. Kim, Chris Allen, Brant M. Wagener, Zhiyuan Shen, and Jac A. Nickoloff

Overexpression of human RAD51 and RAD52 reduces double-strand break-induced homologous recombination in mammalian cells
Nucl. Acids Res. 2001 29: 4352-4360; doi:10.1093/nar/29.21.4352 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

John A. Mengshol, Matthew P. Vincenti, and Constance E. Brinckerhoff

IL-1 induces collagenase-3 (MMP-13) promoter activity in stably transfected chondrocytic cells: requirement for Runx-2 and activation by p38 MAPK and JNK pathways
Nucl. Acids Res. 2001 29: 4361-4372; doi:10.1093/nar/29.21.4361 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Claudio Varotto, Erik Richly, Francesco Salamini, and Dario Leister

GST-PRIME: a genome-wide primer design software for the generation of gene sequence tags
Nucl. Acids Res. 2001 29: 4373-4377; doi:10.1093/nar/29.21.4373 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Graziella Pedrazzi, Claudia Perrera, Heiko Blaser, Patrick Kuster, Giancarlo Marra, Sally L. Davies, Gi-Hyuck Ryu, Raimundo Freire, Ian D. Hickson, Josef Jiricny, and Igor Stagljar

Direct association of Bloom’s syndrome gene product with the human mismatch repair protein MLH1
Nucl. Acids Res. 2001 29: 4378-4386; doi:10.1093/nar/29.21.4378 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Angélique Galvani and Linda Sperling

Transgene-mediated post-transcriptional gene silencing is inhibited by 3' non-coding sequences in Paramecium
Nucl. Acids Res. 2001 29: 4387-4394; doi:10.1093/nar/29.21.4387 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Paul J. Janssen, Benjamin Audit, and Christos A. Ouzounis

Strain-specific genes of Helicobacter pylori: distribution, function and dynamics
Nucl. Acids Res. 2001 29: 4395-4404; doi:10.1093/nar/29.21.4395 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Andrea L. Bacon, Malcolm G. Dunlop, and Susan M. Farrington

Hypermutability at a poly(A/T) tract in the human germline
Nucl. Acids Res. 2001 29: 4405-4413; doi:10.1093/nar/29.21.4405 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Claire Booth, Elen Griffith, Gerard Brady, and David Lydall

Quantitative amplification of single-stranded DNA (QAOS) demonstrates that cdc13-1 mutants generate ssDNA in a telomere to centromere direction
Nucl. Acids Res. 2001 29: 4414-4422; doi:10.1093/nar/29.21.4414 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Laura Nguyen, June Round, Ryan O’Connell, Paul Geurts, Melanie Funes-Duran, Jerelyn Wong, Gregg Jongeward, and Craig A. Vierra

Isolation and characterization of the activated B-cell factor 1 homolog in Caenorhabditis elegans
Nucl. Acids Res. 2001 29: 4423-4432; doi:10.1093/nar/29.21.4423 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Vargheese M. Chennathukuzhi, Yasuyuki Kurihara, Jeffrey D. Bray, Juxiang Yang, and Norman B. Hecht

Altering the GTP binding site of the DNA/RNA-binding protein, Translin/TB-RBP, decreases RNA binding and may create a dominant negative phenotype
Nucl. Acids Res. 2001 29: 4433-4440; doi:10.1093/nar/29.21.4433 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ann Karen C. Brassinga and Gregory T. Marczynski

Replication intermediate analysis confirms that chromosomal replication origin initiates from an unusual intergenic region in Caulobacter crescentus
Nucl. Acids Res. 2001 29: 4441-4451; doi:10.1093/nar/29.21.4441 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jean-Pierre Jost, Edward J. Oakeley, Bing Zhu, Don Benjamin, Stéphane Thiry, Michel Siegmann, and Yan-Chim Jost

5-Methylcytosine DNA glycosylase participates in the genome-wide loss of DNA methylation occurring during mouse myoblast differentiation
Nucl. Acids Res. 2001 29: 4452-4461; doi:10.1093/nar/29.21.4452 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Lorenza Bordoli, Susanne Hüsser, Urs Lüthi, Marco Netsch, Hatam Osmani, and Richard Eckner

Functional analysis of the p300 acetyltransferase domain: the PHD finger of p300 but not of CBP is dispensable for enzymatic activity
Nucl. Acids Res. 2001 29: 4462-4471; doi:10.1093/nar/29.21.4462 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jason L. Petersen and Gary D. Small

A gene required for the novel activation of a class II DNA photolyase in Chlamydomonas
Nucl. Acids Res. 2001 29: 4472-4481; doi:10.1093/nar/29.21.4472 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jan Wrzesinski, Michal Legiewicz, Barbara Smólska, and Jerzy Ciesiolka

Catalytic cleavage of cis- and trans-acting antigenomic delta ribozymes in the presence of various divalent metal ions
Nucl. Acids Res. 2001 29: 4482-4492; doi:10.1093/nar/29.21.4482 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Fang Yu, Nora Zingler, Gerald Schumann, and Wolf H. Strätling

Methyl-CpG-binding protein 2 represses LINE-1 expression and retrotransposition but not Alu transcription
Nucl. Acids Res. 2001 29: 4493-4501; doi:10.1093/nar/29.21.4493 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Zhengjin Cao, Jonathan Wanagat, Susan H. McKiernan, and Judd M. Aiken

Mitochondrial DNA deletion mutations are concomitant with ragged red regions of individual, aged muscle fibers: analysis by laser-capture microdissection
Nucl. Acids Res. 2001 29: 4502-4508; doi:10.1093/nar/29.21.4502 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Lucy Skrabanek and Fabien Campagne

TissueInfo: high-throughput identification of tissue expression profiles and specificity
Nucl. Acids Res. 2001 29: e102; doi:10.1093/nar/29.21.e102 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Michelle L. Reyzer, Jennifer S. Brodbelt, Sean M. Kerwin, and Devinder Kumar

Evaluation of complexation of metal-mediated DNA-binding drugs to oligonucleotides via electrospray ionization mass spectrometry
Nucl. Acids Res. 2001 29: e103; doi:10.1093/nar/29.21.e103 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

John R. Edwards, Yasuhiro Itagaki, and Jingyue Ju

DNA sequencing using biotinylated dideoxynucleotides and mass spectrometry
Nucl. Acids Res. 2001 29: e104; doi:10.1093/nar/29.21.e104 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Shashwati Basak and V. Nagaraja

A versatile in vivo footprinting technique using 1,10-phenanthroline–copper complex to study important cellular processes
Nucl. Acids Res. 2001 29: e105; doi:10.1093/nar/29.21.e105 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Antoine Kerjean, Annick Vieillefond, Nicolas Thiounn, Mathilde Sibony, Marc Jeanpierre, and Pierre Jouannet

Bisulfite genomic sequencing of microdissected cells
Nucl. Acids Res. 2001 29: e106; doi:10.1093/nar/29.21.e106 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Patricia L. Dolan, Yang Wu, Linnea K. Ista, Robert L. Metzenberg, Mary Anne Nelson, and Gabriel P. Lopez

Robust and efficient synthetic method for forming DNA microarrays
Nucl. Acids Res. 2001 29: e107; doi:10.1093/nar/29.21.e107 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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