Nucleic Acids Research

Articles:

Michael J. McIlwraith, David R. Hall, Alicja Z. Stasiak, Andrzej Stasiak, Dale B. Wigley, and Stephen C. West

RadA protein from Archaeoglobus fulgidus forms rings, nucleoprotein filaments and catalyses homologous recombination
Nucl. Acids Res. 2001 29: 4509-4517; doi:10.1093/nar/29.22.4509 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Béatrice Clouet d’Orval, Marie-Line Bortolin, Christine Gaspin, and Jean-Pierre Bachellerie

Box C/D RNA guides for the ribose methylation of archaeal tRNAs. The tRNATrp intron guides the formation of two ribose-methylated nucleosides in the mature tRNATrp
Nucl. Acids Res. 2001 29: 4518-4529; doi:10.1093/nar/29.22.4518 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Katharine L. Sugars, Vishwanie Budhram-Mahadeo, Graham Packham, and David S. Latchman

A minimal Bcl-x promoter is activated by Brn-3a and repressed by p53
Nucl. Acids Res. 2001 29: 4530-4540; doi:10.1093/nar/29.22.4530 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jim Selfridge, Kan-Tai Hsia, Nicola J. Redhead, and David W. Melton

Correction of liver dysfunction in DNA repair-deficient mice with an ERCC1 transgene
Nucl. Acids Res. 2001 29: 4541-4550; doi:10.1093/nar/29.22.4541 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Pascal Lefevre, Joanna Kontaraki, and Constanze Bonifer

Identification of factors mediating the developmental regulation of the early acting –3.9 kb chicken lysozyme enhancer element
Nucl. Acids Res. 2001 29: 4551-4560; doi:10.1093/nar/29.22.4551 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Marina Ptushkina, Karine Berthelot, Tobias von der Haar, Lars Geffers, Jim Warwicker, and John E. G. McCarthy

A second eIF4E protein in Schizosaccharomyces pombe has distinct eIF4G-binding properties
Nucl. Acids Res. 2001 29: 4561-4569; doi:10.1093/nar/29.22.4561 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Morana Bodmer-Glavas, Karin Edler, and Alcide Barberis

RNA polymerase II and III transcription factors can stimulate DNA replication by modifying origin chromatin structures
Nucl. Acids Res. 2001 29: 4570-4580; doi:10.1093/nar/29.22.4570 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Stephanie Jäger, Oliver Fuhrmann, Claudia Heck, Markus Hebermehl, Emile Schiltz, Reinhard Rauhut, and Gabriele Klug

An mRNA degrading complex in Rhodobacter capsulatus
Nucl. Acids Res. 2001 29: 4581-4588; doi:10.1093/nar/29.22.4581 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Andreas Fels, Kanghong Hu, and Detlev Riesner

Transcription of potato spindle tuber viroid by RNA polymerase II starts predominantly at two specific sites
Nucl. Acids Res. 2001 29: 4589-4597; doi:10.1093/nar/29.22.4589 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Carvell T. Nguyen, Felicidad A. Gonzales, and Peter A. Jones

Altered chromatin structure associated with methylation-induced gene silencing in cancer cells: correlation of accessibility, methylation, MeCP2 binding and acetylation
Nucl. Acids Res. 2001 29: 4598-4606; doi:10.1093/nar/29.22.4598 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

François Boudsocq, Shigenori Iwai, Fumio Hanaoka, and Roger Woodgate

Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4): an archaeal DinB-like DNA polymerase with lesion-bypass properties akin to eukaryotic pol
Nucl. Acids Res. 2001 29: 4607-4616; doi:10.1093/nar/29.22.4607 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Atsushi Yamagata, Ryoji Masui, Yoshimitsu Kakuta, Seiki Kuramitsu, and Keiichi Fukuyama

Overexpression, purification and characterization of RecJ protein from Thermus thermophilus HB8 and its core domain
Nucl. Acids Res. 2001 29: 4617-4624; doi:10.1093/nar/29.22.4617 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Peter Wenz, Sabine Schwank, Ursula Hoja, and Hans-Joachim Schüller

A downstream regulatory element located within the coding sequence mediates autoregulated expression of the yeast fatty acid synthase gene FAS2 by the FAS1 gene product
Nucl. Acids Res. 2001 29: 4625-4632; doi:10.1093/nar/29.22.4625 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Stefan Kurtz, Jomuna V. Choudhuri, Enno Ohlebusch, Chris Schleiermacher, Jens Stoye, and Robert Giegerich

REPuter: the manifold applications of repeat analysis on a genomic scale
Nucl. Acids Res. 2001 29: 4633-4642; doi:10.1093/nar/29.22.4633 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Donald H. Atha, Wojciech Kasprzak, Catherine D. O’Connell, and Bruce A. Shapiro

Prediction of DNA single-strand conformation polymorphism: analysis by capillary electrophoresis and computerized DNA modeling
Nucl. Acids Res. 2001 29: 4643-4653; doi:10.1093/nar/29.22.4643 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Karine Dubrana and Laurence Amar

Control of DNA excision efficiency in Paramecium
Nucl. Acids Res. 2001 29: 4654-4662; doi:10.1093/nar/29.22.4654 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kyoko Hanawa-Suetsugu, Valérie Bordeau, Hyouta Himeno, Akira Muto, and Brice Felden

Importance of the conserved nucleotides around the tRNA-like structure of Escherichia coli transfer-messenger RNA for protein tagging
Nucl. Acids Res. 2001 29: 4663-4673; doi:10.1093/nar/29.22.4663 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Heidi G. Elmendorf, Steven M. Singer, and Theodore E. Nash

The abundance of sterile transcripts in Giardia lamblia
Nucl. Acids Res. 2001 29: 4674-4683; doi:10.1093/nar/29.22.4674 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Petr Fojtík and Michaela Vorlícková

The fragile X chromosome (GCC) repeat folds into a DNA tetraplex at neutral pH
Nucl. Acids Res. 2001 29: 4684-4690; doi:10.1093/nar/29.22.4684 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Konstantin Lepikhov, Andrei Tchernov, Ludmila Zheleznaja, Nicholas Matvienko, Joern Walter, and Thomas A. Trautner

Characterization of the type IV restriction modification system BspLU11III from Bacillus sp. LU11
Nucl. Acids Res. 2001 29: 4691-4698; doi:10.1093/nar/29.22.4691 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

James A. McCloskey, David E. Graham, Shaolian Zhou, Pamela F. Crain, Michael Ibba, Jordan Konisky, Dieter Söll, and Gary J. Olsen

Post-transcriptional modification in archaeal tRNAs: identities and phylogenetic relations of nucleotides from mesophilic and hyperthermophilic Methanococcales
Nucl. Acids Res. 2001 29: 4699-4706; doi:10.1093/nar/29.22.4699 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Henriette Irmer and Christine Clayton

Degradation of the unstable EP1 mRNA in Trypanosoma brucei involves initial destruction of the 3'-untranslated region
Nucl. Acids Res. 2001 29: 4707-4715; doi:10.1093/nar/29.22.4707 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Pornchai Rojsitthisak, Rebecca M. Romero, and Ian S. Haworth

Extrahelical cytosine bases in DNA duplexes containing d[GCC]_n·d[GCC]_n repeats: detection by a mechlorethamine crosslinking reaction
Nucl. Acids Res. 2001 29: 4716-4723; doi:10.1093/nar/29.22.4716 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Thomas J. Macke, David J. Ecker, Robin R. Gutell, Daniel Gautheret, David A. Case, and Rangarajan Sampath

RNAMotif, an RNA secondary structure definition and search algorithm
Nucl. Acids Res. 2001 29: 4724-4735; doi:10.1093/nar/29.22.4724 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Patricio Fernandez-Silva, Paola Loguercio Polosa, Marina Roberti, Barbara Di Ponzio, Maria Nicola Gadaleta, Julio Montoya, and Palmiro Cantatore

Sea urchin mtDBP is a two-faced transcription termination factor with a biased polarity depending on the RNA polymerase
Nucl. Acids Res. 2001 29: 4736-4743; doi:10.1093/nar/29.22.4736 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Xiaolian Gao, Eric LeProust, Hua Zhang, Onnop Srivannavit, Erdogan Gulari, Peilin Yu, Ciro Nishiguchi, Qin Xiang, and Xiaochuan Zhou

A flexible light-directed DNA chip synthesis gated by deprotection using solution photogenerated acids
Nucl. Acids Res. 2001 29: 4744-4750; doi:10.1093/nar/29.22.4744 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

V. A. Efimov, O. G. Chakhmakhcheva, J. Archdeacon, J. M. Fernandez, O. N. Fedorkin, Yu. L. Dorokhov, and J. G. Atabekov

Detection of the 5'-cap structure of messenger RNAs with the use of the cap-jumping approach
Nucl. Acids Res. 2001 29: 4751-4759; doi:10.1093/nar/29.22.4751 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jose Luis Martinez, Tilman Sanchez-Elsner, Gloria Morcillo, and Jose Luis Diez

Heat shock regulatory elements are present in telomeric repeats of Chironomus thummi
Nucl. Acids Res. 2001 29: 4760-4766; doi:10.1093/nar/29.22.4760 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Akiko Takasuga, Shinji Hirotsune, Reiko Itoh, Ayako Jitohzono, Harumi Suzuki, Hisashi Aso, and Yoshikazu Sugimoto

Establishment of a high throughput EST sequencing system using poly(A) tail-removed cDNA libraries and determination of 36 000 bovine ESTs
Nucl. Acids Res. 2001 29: e108; doi:10.1093/nar/29.22.e108 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kazunori Otobe and Toshio Ohtani

Behavior of DNA fibers stretched by precise meniscus motion control
Nucl. Acids Res. 2001 29: e109; doi:10.1093/nar/29.22.e109 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Christian Weinel, Burkhard Tümmler, Helmut Hilbert, Karen E. Nelson, and Claudia Kiewitz

General method of rapid Smith/Birnstiel mapping adds for gap closure in shotgun microbial genome sequencing projects: application to Pseudomonas putida KT2440
Nucl. Acids Res. 2001 29: e110; doi:10.1093/nar/29.22.e110 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Evgeni V. Sokurenko, Veronika Tchesnokova, Anthony T. Yeung, Catherine A. Oleykowski, Elena Trintchina, Kelly T. Hughes, Rebecca A. Rashid, J. Mark Brint, Steve L. Moseley, and Stephen Lory

Detection of simple mutations and polymorphisms in large genomic regions
Nucl. Acids Res. 2001 29: e111; doi:10.1093/nar/29.22.e111 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Carsten Rosenow, Rini Mukherjee Saxena, Mark Durst, and Thomas R. Gingeras

Prokaryotic RNA preparation methods useful for high density array analysis: comparison of two approaches
Nucl. Acids Res. 2001 29: e112; doi:10.1093/nar/29.22.e112 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

David S. Peabody and Lina Al-Bitar

Isolation of viral coat protein mutants with altered assembly and aggregation properties
Nucl. Acids Res. 2001 29: e113; doi:10.1093/nar/29.22.e113 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yi Fan, Chih Yuan Wu, Cheng Wei Chen, Tse Wen Chang, and Carmay Lim

Preparing a human membrane and secreted protein-enriched cDNA library using PCR primers derived from a genomic database
Nucl. Acids Res. 2001 29: e114; doi:10.1093/nar/29.22.e114 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Markus Meissner, Susan Brecht, Hermann Bujard, and Dominique Soldati

Modulation of myosin A expression by a newly established tetracycline repressor-based inducible system in Toxoplasma gondii
Nucl. Acids Res. 2001 29: e115; doi:10.1093/nar/29.22.e115 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Xiaoquan Qi, Saleha Bakht, Katrien M. Devos, Mike D. Gale, and Anne Osbourn

L-RCA (ligation-rolling circle amplification): a general method for genotyping of single nucleotide polymorphisms (SNPs)
Nucl. Acids Res. 2001 29: e116; doi:10.1093/nar/29.22.e116 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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