Nucleic Acids Research

Articles:

Lorenza Bordoli, Marco Netsch, Urs Lüthi, Werner Lutz, and Richard Eckner

Plant orthologs of p300/CBP: conservation of a core domain in metazoan p300/CBP acetyltransferase-related proteins
Nucl. Acids Res. 2001 29: 589-597; doi:10.1093/nar/29.3.589 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Christophe Dez, Anthony Henras, Bruno Faucon, Denis L. J. Lafontaine, Michèle Caizergues-Ferrer, and Yves Henry

Stable expression in yeast of the mature form of human telomerase RNA depends on its association with the box H/ACA small nucleolar RNP proteins Cbf5p, Nhp2p and Nop10p
Nucl. Acids Res. 2001 29: 598-603; doi:10.1093/nar/29.3.598 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Hanjing Yang, Isabella T. Phan, Sorel Fitz-Gibbon, Mahmud K. K. Shivji, Richard D. Wood, Wendy M. Clendenin, Elizabeth C. Hyman, and Jeffrey H. Miller

A thermostable endonuclease III homolog from the archaeon Pyrobaculum aerophilum
Nucl. Acids Res. 2001 29: 604-613; doi:10.1093/nar/29.3.604 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Molly E. Shea and Hiroshi Hiasa

Replicative helicases can translocate through abasic site-induced covalent topoisomerase IV–DNA complexes
Nucl. Acids Res. 2001 29: 614-621; doi:10.1093/nar/29.3.614 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Changxian Shen, Andreas Buck, Gerhard Mehrke, Bülent Polat, Hans-Jügen Gross, Max Bachem, and Sven Reske

Triplex forming oligonucleotide targeted to 3'UTR downregulates the expression of the bcl-2 proto-oncogene in HeLa cells
Nucl. Acids Res. 2001 29: 622-628; doi:10.1093/nar/29.3.622 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ahyar Ahmad, Nahoko Nagamatsu, Haruna Kouriki, Yasunari Takami, and Tatsuo Nakayama

Leucine zipper motif of chicken histone acetyltransferase-1 is essential for in vivo and in vitro interactions with the p48 subunit of chicken chromatin assembly factor-1
Nucl. Acids Res. 2001 29: 629-637; doi:10.1093/nar/29.3.629 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Nick V. Grishin

KH domain: one motif, two folds
Nucl. Acids Res. 2001 29: 638-643; doi:10.1093/nar/29.3.638 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Alain Chopin, Alexander Bolotin, Alexei Sorokin, S. Dusko Ehrlich, and Marie-Christine Chopin

Analysis of six prophages in Lactococcus lactis IL1403: different genetic structure of temperate and virulent phage populations
Nucl. Acids Res. 2001 29: 644-651; doi:10.1093/nar/29.3.644 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Megan E. Laurance, D. Barry Starr, Emil F. Michelotti, Elaine Cheung, Carolyn Gonzalez, Albert W. Tam, Jon Deikman, Cynthia A. Edwards, and A. Jane Bardwell

Specific down-regulation of an engineered human cyclin D1 promoter by a novel DNA-binding ligand in intact cells
Nucl. Acids Res. 2001 29: 652-661; doi:10.1093/nar/29.3.652 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Catherine Arnaudeau, Lorène Rozier, Christophe Cazaux, Martine Defais, Dag Jenssen, and Thomas Helleday

RAD51 supports spontaneous non-homologous recombination in mammalian cells, but not the corresponding process induced by topoisomerase inhibitors
Nucl. Acids Res. 2001 29: 662-667; doi:10.1093/nar/29.3.662 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Uma Lakshmipathy and Colin Campbell

Antisense-mediated decrease in DNA ligase III expression results in reduced mitochondrial DNA integrity
Nucl. Acids Res. 2001 29: 668-676; doi:10.1093/nar/29.3.668 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Francis Robert and Léa Brakier-Gingras

Ribosomal protein S7 from Escherichia coli uses the same determinants to bind 16S ribosomal RNA and its messenger RNA
Nucl. Acids Res. 2001 29: 677-682; doi:10.1093/nar/29.3.677 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ken-ichi Yoshida, Kazuo Kobayashi, Yasuhiko Miwa, Choong-Min Kang, Masayuki Matsunaga, Hirotake Yamaguchi, Shigeo Tojo, Mami Yamamoto, Ryoko Nishi, Naotake Ogasawara, Tatsuo Nakayama, and Yasutaro Fujita

Combined transcriptome and proteome analysis as a powerful approach to study genes under glucose repression in Bacillus subtilis
Nucl. Acids Res. 2001 29: 683-692; doi:10.1093/nar/29.3.683 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Clare E. Bostock-Smith, Sarah A. Harris, Charles A. Laughton, and Mark S. Searle

Induced fit DNA recognition by a minor groove binding analogue of Hoechst 33258: fluctuations in DNA A tract structure investigated by NMR and molecular dynamics simulations
Nucl. Acids Res. 2001 29: 693-702; doi:10.1093/nar/29.3.693 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Sheldon S. Leung and Donna J. Koslowsky

RNA editing in Trypanosoma brucei: characterization of gRNA U-tail interactions with partially edited mRNA substrates
Nucl. Acids Res. 2001 29: 703-709; doi:10.1093/nar/29.3.703 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Michael O’Connor, Wyan-Ching Mimi Lee, Anuj Mankad, Catherine L. Squires, and Albert E. Dahlberg

Mutagenesis of the peptidyltransferase center of 23S rRNA: the invariant U2449 is dispensable
Nucl. Acids Res. 2001 29: 710-715; doi:10.1093/nar/29.3.710 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Rebecca A. O’Donnell, Peter R. Preiser, Donald H. Williamson, Peter W. Moore, Alan F. Cowman, and Brendan S. Crabb

An alteration in concatameric structure is associated with efficient segregation of plasmids in transfected Plasmodium falciparum parasites
Nucl. Acids Res. 2001 29: 716-724; doi:10.1093/nar/29.3.716 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Michele L. Engel, Jane C. Hines, and Dan S. Ray

The Crithidia fasciculata RNH1 gene encodes both nuclear and mitochondrial isoforms of RNase H
Nucl. Acids Res. 2001 29: 725-731; doi:10.1093/nar/29.3.725 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Zoë A. Quinn, Chih-Chin Yang, Jeffrey L. Wrana, and John C. McDermott

Smad proteins function as co-modulators for MEF2 transcriptional regulatory proteins
Nucl. Acids Res. 2001 29: 732-742; doi:10.1093/nar/29.3.732 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Hanjing Yang, Wendy M. Clendenin, Donny Wong, Bruce Demple, Malgorzata M. Slupska, Ju-Huei Chiang, and Jeffrey H. Miller

Enhanced activity of adenine-DNA glycosylase (Myh) by apurinic/apyrimidinic endonuclease (Ape1) in mammalian base excision repair of an A/GO mismatch
Nucl. Acids Res. 2001 29: 743-752; doi:10.1093/nar/29.3.743 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Isabelle Barrette, Guylaine Poisson, Patrick Gendron, and François Major

Pseudoknots in prion protein mRNAs confirmed by comparative sequence analysis and pattern searching
Nucl. Acids Res. 2001 29: 753-758; doi:10.1093/nar/29.3.753 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Angel Cebolla, Carolina Sousa, and Víctor de Lorenzo

Rational design of a bacterial transcriptional cascade for amplifying gene expression capacity
Nucl. Acids Res. 2001 29: 759-766; doi:10.1093/nar/29.3.759 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sheng-Hao Chao, Arno L. Greenleaf, and David H. Price

Juglone, an inhibitor of the peptidyl-prolyl isomerase Pin1, also directly blocks transcription
Nucl. Acids Res. 2001 29: 767-773; doi:10.1093/nar/29.3.767 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Lee Ann McCue, William Thompson, C. Steven Carmack, Michael P. Ryan, Jun S. Liu, Victoria Derbyshire, and Charles E. Lawrence

Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes
Nucl. Acids Res. 2001 29: 774-782; doi:10.1093/nar/29.3.774 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jing Liu, Ren-Huan Xu, You-Xin Jin, and De-Bao Wang

Triplex targeting of human PDGF-B (c-sis, proto-oncogene) promoter specifically inhibits factors binding and PDGF-B transcription
Nucl. Acids Res. 2001 29: 783-791; doi:10.1093/nar/29.3.783 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Gerhard Fritz and Bernd Kaina

Transcriptional activation of the small GTPase gene rhoB by genotoxic stress is regulated via a CCAAT element
Nucl. Acids Res. 2001 29: 792-798; doi:10.1093/nar/29.3.792 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Brian D. Cohen, Odeniel Sertil, Natalia E. Abramova, Kelvin J. A. Davies, and Charles V. Lowry

Induction and repression of DAN1 and the family of anaerobic mannoprotein genes in Saccharomyces cerevisiae occurs through a complex array of regulatory sites
Nucl. Acids Res. 2001 29: 799-808; doi:10.1093/nar/29.3.799 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sobha Kamath and Michael Leffak

Multiple sites of replication initiation in the human ß-globin gene locus
Nucl. Acids Res. 2001 29: 809-817; doi:10.1093/nar/29.3.809 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Paul M. Harrison, Nathaniel Echols, and Mark B. Gerstein

Digging for dead genes: an analysis of the characteristics of the pseudogene population in the Caenorhabditis elegans genome
Nucl. Acids Res. 2001 29: 818-830; doi:10.1093/nar/29.3.818 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kenji Kanaori, Naoko Shibayama, Keigo Gohda, Kunihiko Tajima, and Keisuke Makino

Multiple four-stranded conformations of human telomere sequence d(CCCTAA) in solution
Nucl. Acids Res. 2001 29: 831-840; doi:10.1093/nar/29.3.831 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Cynthia M. Simbulan-Rosenthal, Dean S. Rosenthal, RuiBai Luo, Jia-He Li, Jie Zhang, and Mark E. Smulson

Inhibition of poly(ADP-ribose) polymerase activity is insufficient to induce tetraploidy
Nucl. Acids Res. 2001 29: 841-849; doi:10.1093/nar/29.3.841 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kirk W. Deitsch, Casey L. Driskill, and Thomas E. Wellems

Transformation of malaria parasites by the spontaneous uptake and expression of DNA from human erythrocytes
Nucl. Acids Res. 2001 29: 850-853; doi:10.1093/nar/29.3.850 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Vasily M. Studitsky, Konstantin L. Brodolin, Ye Liu, and Andrei D. Mirzabekov

Topography of lacUV5 initiation complexes
Nucl. Acids Res. 2001 29: 854-861; doi:10.1093/nar/29.3.854 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Paul Gaytán, Jorge Yáñez, Filiberto Sánchez, and Xavier Soberón

Orthogonal combinatorial mutagenesis: a codon-level combinatorial mutagenesis method useful for low multiplicity and amino acid-scanning protocols
Nucl. Acids Res. 2001 29: e9; doi:10.1093/nar/29.3.e9 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Ioannis Dragatsis and Scott Zeitlin

A method for the generation of conditional gene repair mutations in mice
Nucl. Acids Res. 2001 29: e10; doi:10.1093/nar/29.3.e10 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Young-Soo Kwon, Kai Tang, Charles R. Cantor, Hubert Köster, and Changwon Kang

DNA sequencing and genotyping by transcriptional synthesis of chain-terminated RNA ladders and MALDI-TOF mass spectrometry
Nucl. Acids Res. 2001 29: e11; doi:10.1093/nar/29.3.e11 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Miral Dizdaroglu, Pawel Jaruga, and Henry Rodriguez

Measurement of 8-hydroxy-2'-deoxyguanosine in DNA by high-performance liquid chromatography-mass spectrometry: comparison with measurement by gas chromatography-mass spectrometry
Nucl. Acids Res. 2001 29: e12; doi:10.1093/nar/29.3.e12 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Károly Szuhai, Jody M. van den Ouweland, Roeland W. Dirks, Marc Lemaître, Jean-Christophe Truffert, George M. Janssen, Hans J. Tanke, Elisabeth Holme, J. Antonie Maassen, and Anton K. Raap

Simultaneous A8344G heteroplasmy and mitochondrial DNA copy number quantification in Myoclonus Epilepsy and Ragged-Red Fibers (MERRF) syndrome by a multiplex Molecular Beacon based real-time fluorescence PCR
Nucl. Acids Res. 2001 29: e13; doi:10.1093/nar/29.3.e13 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Maria D. Lalioti and John K. Heath

A new method for generating point mutations in bacterial artificial chromosomes by homologous recombination in Escherichia coli
Nucl. Acids Res. 2001 29: e14; doi:10.1093/nar/29.3.e14 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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