Nucleic Acids Research

Articles:

Thoru Pederson

Fluorescent RNA cytochemistry: tracking gene transcripts in living cells
Nucl. Acids Res. 2001 29: 1013-1016; doi:10.1093/nar/29.5.1013 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yuhong Zuo and Murray P. Deutscher

Exoribonuclease superfamilies: structural analysis and phylogenetic distribution
Nucl. Acids Res. 2001 29: 1017-1026; doi:10.1093/nar/29.5.1017 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Louise A. Rafty and Levon M. Khachigian

Sp1 phosphorylation regulates inducible expression of platelet-derived growth factor B-chain gene via atypical protein kinase C-
Nucl. Acids Res. 2001 29: 1027-1033; doi:10.1093/nar/29.5.1027 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ye Ding and Charles E. Lawrence

Statistical prediction of single-stranded regions in RNA secondary structure and application to predicting effective antisense target sites and beyond
Nucl. Acids Res. 2001 29: 1034-1046; doi:10.1093/nar/29.5.1034 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Srinivas Harish, Tasneem Khanam, Sendurai Mani, and Pundi Rangarajan

Transcriptional activation by hepatocyte nuclear factor-4 in a cell-free system derived from rat liver nuclei
Nucl. Acids Res. 2001 29: 1047-1053; doi:10.1093/nar/29.5.1047 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Gerhard Wieland, Peter Hemmerich, Marianne Koch, Tanja Stoyan, Johannes Hegemann, and Stephan Diekmann

Determination of the binding constants of the centromere protein Cbf1 to all 16 centromere DNAs of Saccharomyces cerevisiae
Nucl. Acids Res. 2001 29: 1054-1060; doi:10.1093/nar/29.5.1054 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Alessandro Vindigni, Alexander Ochem, Gianluca Triolo, and Arturo Falaschi

Identification of human DNA helicase V with the far upstream element-binding protein
Nucl. Acids Res. 2001 29: 1061-1067; doi:10.1093/nar/29.5.1061 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Francisco Rivero, Heidrun Dislich, Gernot Glöckner, and Angelika A. Noegel

The Dictyostelium discoideum family of Rho-related proteins
Nucl. Acids Res. 2001 29: 1068-1079; doi:10.1093/nar/29.5.1068 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Rosalinde van Lipzig, Marc Van Montagu, Marc Cornelissen, and Frank Meulewaeter

Functionality of the STNV translational enhancer domain correlates with affinity for two wheat germ factors
Nucl. Acids Res. 2001 29: 1080-1086; doi:10.1093/nar/29.5.1080 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Florence Koeppel, Jean-François Riou, Abdelazize Laoui, Patrick Mailliet, Paola B. Arimondo, Delphine Labit, Odile Petitgenet, Claude Hélène, and Jean-Louis Mergny

Ethidium derivatives bind to G-quartets, inhibit telomerase and act as fluorescent probes for quadruplexes
Nucl. Acids Res. 2001 29: 1087-1096; doi:10.1093/nar/29.5.1087 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Heidi J. Sofia, Guang Chen, Beth G. Hetzler, Jorge F. Reyes-Spindola, and Nancy E. Miller

Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: functional characterization using new analysis and information visualization methods
Nucl. Acids Res. 2001 29: 1097-1106; doi:10.1093/nar/29.5.1097 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Marie-Hélène David-Cordonnier, Serge Boiteux, and Peter O’Neill

Excision of 8-oxoguanine within clustered damage by the yeast OGG1 protein
Nucl. Acids Res. 2001 29: 1107-1113; doi:10.1093/nar/29.5.1107 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Martin Beaulieu, Garry P. Larson, Louis Geller, Steven D. Flanagan, and Theodore G. Krontiris

PCR candidate region mismatch scanning: adaptation to quantitative, high-throughput genotyping
Nucl. Acids Res. 2001 29: 1114-1124; doi:10.1093/nar/29.5.1114 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yang-Gyun Kim, Stefan Maas, and Alexander Rich

Comparative mutational analysis of cis-acting RNA signals for translational frameshifting in HIV-1 and HTLV-2
Nucl. Acids Res. 2001 29: 1125-1131; doi:10.1093/nar/29.5.1125 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

L. Kozerski, A. P. Mazurek, R. Kawecki, W. Bocian, P. Krajewski, E. Bednarek, J. Sitkowski, M. P. Williamson, A. J. G. Moir, and P. E. Hansen

A nicked duplex decamer DNA with a PEG₆ tether
Nucl. Acids Res. 2001 29: 1132-1143; doi:10.1093/nar/29.5.1132 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Marie-Claire Daugeron and Patrick Linder

Characterization and mutational analysis of yeast Dbp8p, a putative RNA helicase involved in ribosome biogenesis
Nucl. Acids Res. 2001 29: 1144-1155; doi:10.1093/nar/29.5.1144 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kristopher S. Cunningham, Mark N. Hanson, and Daniel R. Schoenberg

Polysomal ribonuclease 1 exists in a latent form on polysomes prior to estrogen activation of mRNA decay
Nucl. Acids Res. 2001 29: 1156-1162; doi:10.1093/nar/29.5.1156 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Siva R. Wigneshweraraj, Akira Ishihama, and Martin Buck

In vitro roles of invariant helix–turn–helix motif residue R383 in ⁵⁴ (^N)
Nucl. Acids Res. 2001 29: 1163-1174; doi:10.1093/nar/29.5.1163 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Tapas K. Sengupta, Johnthan Gordon, and Eleanor K. Spicer

RegA proteins from phage T4 and RB69 have conserved helix–loop groove RNA binding motifs but different RNA binding specificities
Nucl. Acids Res. 2001 29: 1175-1184; doi:10.1093/nar/29.5.1175 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Mihaela Pertea, Xiaoying Lin, and Steven L. Salzberg

GeneSplicer: a new computational method for splice site prediction
Nucl. Acids Res. 2001 29: 1185-1190; doi:10.1093/nar/29.5.1185 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Michael R. Valentine and John Termini

Kinetics of formation of hypoxanthine containing base pairs by HIV-RT: RNA template effects on the base substitution frequencies
Nucl. Acids Res. 2001 29: 1191-1199; doi:10.1093/nar/29.5.1191 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Hiroto Izumi, Toshihiro Imamura, Gunji Nagatani, Tomoko Ise, Tadashi Murakami, Hidetaka Uramoto, Takayuki Torigoe, Hiroshi Ishiguchi, Yoichiro Yoshida, Minoru Nomoto, Tatsuro Okamoto, Takeshi Uchiumi, Michihiko Kuwano, Keiko Funa, and Kimitoshi Kohno

Y box-binding protein-1 binds preferentially to single-stranded nucleic acids and exhibits 3'5' exonuclease activity
Nucl. Acids Res. 2001 29: 1200-1207; doi:10.1093/nar/29.5.1200 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Valentina Tereshko, Christopher J. Wilds, George Minasov, Thaza P. Prakash, Martin A. Maier, Andrew Howard, Zdzislaw Wawrzak, Muthiah Manoharan, and Martin Egli

Detection of alkali metal ions in DNA crystals using state-of-the-art X-ray diffraction experiments
Nucl. Acids Res. 2001 29: 1208-1215; doi:10.1093/nar/29.5.1208 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Maria D. Ermolaeva, Owen White, and Steven L. Salzberg

Prediction of operons in microbial genomes
Nucl. Acids Res. 2001 29: 1216-1221; doi:10.1093/nar/29.5.1216 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Raja Mokdad-Gargouri, Khmaies Belhadj, and Ali Gargouri

Translational control of human p53 expression in yeast mediated by 5'-UTR–ORF structural interaction
Nucl. Acids Res. 2001 29: 1222-1227; doi:10.1093/nar/29.5.1222 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Masaharu Sakai, Mohamed S. Serria, Hiromi Ikeda, Kazuhiko Yoshida, Junko Imaki, and Shinzo Nishi

Regulation of c-maf gene expression by Pax6 in cultured cells
Nucl. Acids Res. 2001 29: 1228-1237; doi:10.1093/nar/29.5.1228 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Steven Zimmerly, Georg Hausner, and Xu-chu Wu

Phylogenetic relationships among group II intron ORFs
Nucl. Acids Res. 2001 29: 1238-1250; doi:10.1093/nar/29.5.1238 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Rebecca E. Schweppe and Arthur Gutierrez-Hartmann

Pituitary Ets-1 and GABP bind to the growth factor regulatory sites of the rat prolactin promoter
Nucl. Acids Res. 2001 29: 1251-1260; doi:10.1093/nar/29.5.1251 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Rocky M. Cranenburgh, Julian A. J. Hanak, Steven G. Williams, and David J. Sherratt

Escherichia coli strains that allow antibiotic-free plasmid selection and maintenance by repressor titration
Nucl. Acids Res. 2001 29: e26; doi:10.1093/nar/29.5.e26 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Leonardo Giovannoni, Francesca Viti, Luciano Zardi, and Dario Neri

Isolation of anti-angiogenesis antibodies from a large combinatorial repertoire by colony filter screening
Nucl. Acids Res. 2001 29: e27; doi:10.1093/nar/29.5.e27 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Gopala K. Kovvali, Bena Mehta, Charles B. Epstein, and Stuart G. Lutzker

Identification of partial loss of function p53 gene mutations utilizing a yeast-based functional assay
Nucl. Acids Res. 2001 29: e28; doi:10.1093/nar/29.5.e28 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

L. R. Baugh, A. A. Hill, E. L. Brown, and Craig P. Hunter

Quantitative analysis of mRNA amplification by in vitro transcription
Nucl. Acids Res. 2001 29: e29; doi:10.1093/nar/29.5.e29 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Corrigendum:

Corrigendum
Nucl. Acids Res. 2001 29: 0; doi:10.1093/nar/29.5.0 [Print PDF] [Request Permissions]  

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