Nucleic Acids Research

Survey and Summary:

Moshe J. Sadofsky

The RAG proteins in V(D)J recombination: more than just a nuclease
Nucl. Acids Res. 2001 29: 1399-1409; doi:10.1093/nar/29.7.1399 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Articles:

Helen Brantjes, Jeroen Roose, Marc van de Wetering, and Hans Clevers

All Tcf HMG box transcription factors interact with Groucho-related co-repressors
Nucl. Acids Res. 2001 29: 1410-1419; doi:10.1093/nar/29.7.1410 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Michael O’Connor and Albert E. Dahlberg

Enhancement of translation by the epsilon element is independent of the sequence of the 460 region of 16S rRNA
Nucl. Acids Res. 2001 29: 1420-1425; doi:10.1093/nar/29.7.1420 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Mathias Brännvall, Nils E. Mikkelsen, and Leif A. Kirsebom

Monitoring the structure of Escherichia coli RNase P RNA in the presence of various divalent metal ions
Nucl. Acids Res. 2001 29: 1426-1432; doi:10.1093/nar/29.7.1426 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Armelle Lengronne, Philippe Pasero, Aaron Bensimon, and Etienne Schwob

Monitoring S phase progression globally and locally using BrdU incorporation in TK⁺ yeast strains
Nucl. Acids Res. 2001 29: 1433-1442; doi:10.1093/nar/29.7.1433 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Steffen Emmert, Thomas D. Schneider, Sikandar G. Khan, and Kenneth H. Kraemer

The human XPG gene: gene architecture, alternative splicing and single nucleotide polymorphisms
Nucl. Acids Res. 2001 29: 1443-1452; doi:10.1093/nar/29.7.1443 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Annabelle Monnier, Robert Bellé, Julia Morales, Patrick Cormier, Sandrine Boulben, and Odile Mulner-Lorillon

Evidence for regulation of protein synthesis at the elongation step by CDK1/cyclin B phosphorylation
Nucl. Acids Res. 2001 29: 1453-1457; doi:10.1093/nar/29.7.1453 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Lata Venkatarangan, A. Sivaprasad, Francis Johnson, and Ashis K. Basu

Site-specifically located 8-amino-2'-deoxyguanosine: thermodynamic stability and mutagenic properties in Escherichia coli
Nucl. Acids Res. 2001 29: 1458-1463; doi:10.1093/nar/29.7.1458 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Alexei Fedorov, Serge Saxonov, Larisa Fedorova, and Iraj Daizadeh

Comparison of intron-containing and intron-lacking human genes elucidates putative exonic splicing enhancers
Nucl. Acids Res. 2001 29: 1464-1469; doi:10.1093/nar/29.7.1464 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Zhen Lei, Ling Zhang, Liang Ren Zhang, Jun Chen, Ji Mei Min, and Li He Zhang

Hybrid characteristics of oligonucleotides consisting of isonucleoside 2',5'-anhydro-3'-deoxy-3'-(thymin-1-yl)-D-mannitol with different linkage modes
Nucl. Acids Res. 2001 29: 1470-1475; doi:10.1093/nar/29.7.1470 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Shelley A. Williams and Stephen E. Halford

SfiI endonuclease activity is strongly influenced by the non-specific sequence in the middle of its recognition site
Nucl. Acids Res. 2001 29: 1476-1483; doi:10.1093/nar/29.7.1476 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Irina Minko, Stanley Hattman, R. Stephen Lloyd, and Valeri Kossykh

Methylation by a mutant T2 DNA [N⁶-adenine] methyltransferase expands the usage of RecA-assisted endonuclease (RARE) cleavage
Nucl. Acids Res. 2001 29: 1484-1490; doi:10.1093/nar/29.7.1484 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Andrey V. Matveyev, Kathryn T. Young, Andrew Meng, and Jeff Elhai

DNA methyltransferases of the cyanobacterium Anabaena PCC 7120
Nucl. Acids Res. 2001 29: 1491-1506; doi:10.1093/nar/29.7.1491 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Martha L. Reed, Nemo M. Peeters, and Maureen R. Hanson

A single alteration 20 nt 5' to an editing target inhibits chloroplast RNA editing in vivo
Nucl. Acids Res. 2001 29: 1507-1513; doi:10.1093/nar/29.7.1507 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

P. Lichtlen, Y. Wang, T. Belser, O. Georgiev, U. Certa, R. Sack, and W. Schaffner

Target gene search for the metal-responsive transcription factor MTF-1
Nucl. Acids Res. 2001 29: 1514-1523; doi:10.1093/nar/29.7.1514 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Eric J. Stockinger, Yaopan Mao, Martha K. Regier, Steven J. Triezenberg, and Michael F. Thomashow

Transcriptional adaptor and histone acetyltransferase proteins in Arabidopsis and their interactions with CBF1, a transcriptional activator involved in cold-regulated gene expression
Nucl. Acids Res. 2001 29: 1524-1533; doi:10.1093/nar/29.7.1524 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

S. J. Collis, A. Tighe, S. D. Scott, S. A. Roberts, J. H. Hendry, and G. P. Margison

Ribozyme minigene-mediated RAD51 down-regulation increases radiosensitivity of human prostate cancer cells
Nucl. Acids Res. 2001 29: 1534-1538; doi:10.1093/nar/29.7.1534 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Marilyn E. Ferrari, Denis Rusalov, Joel Enas, and Carl J. Wheeler

Trends in lipoplex physical properties dependent on cationic lipid structure, vehicle and complexation procedure do not correlate with biological activity
Nucl. Acids Res. 2001 29: 1539-1548; doi:10.1093/nar/29.7.1539 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

M. Esther Fárez-Vidal, Cláribel Gallego, Luis Miguel Ruiz-Pérez, and Dolores González-Pacanowska

Characterization of uracil-DNA glycosylase activity from Trypanosoma cruzi and its stimulation by AP endonuclease
Nucl. Acids Res. 2001 29: 1549-1555; doi:10.1093/nar/29.7.1549 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Gwen Gilinger and Vivian Bellofatto

Trypanosome spliced leader RNA genes contain the first identified RNA polymerase II gene promoter in these organisms
Nucl. Acids Res. 2001 29: 1556-1564; doi:10.1093/nar/29.7.1556 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sarah E. Lee, Alexander Sidorov, Thierry Gourlain, Nathalie Mignet, Simon J. Thorpe, John A. Brazier, Mark J. Dickman, David P. Hornby, Jane A. Grasby, and David M. Williams

Enhancing the catalytic repertoire of nucleic acids: a systematic study of linker length and rigidity
Nucl. Acids Res. 2001 29: 1565-1573; doi:10.1093/nar/29.7.1565 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Fabio Santagati, Elena Botta, Miria Stefanini, and Antonia M. Pedrini

Different dynamics in nuclear entry of subunits of the repair/transcription factor TFIIH
Nucl. Acids Res. 2001 29: 1574-1581; doi:10.1093/nar/29.7.1574 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sarah L. Donahue, Brian E. Corner, Laura Bordone, and Colin Campbell

Mitochondrial DNA ligase function in Saccharomyces cerevisiae
Nucl. Acids Res. 2001 29: 1582-1589; doi:10.1093/nar/29.7.1582 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jan Mrázek, Devaki Bhaya, Arthur R. Grossman, and Samuel Karlin

Highly expressed and alien genes of the Synechocystis genome
Nucl. Acids Res. 2001 29: 1590-1601; doi:10.1093/nar/29.7.1590 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Brice Felden, Christian Massire, Eric Westhof, John F. Atkins, and Raymond F. Gesteland

Phylogenetic analysis of tmRNA genes within a bacterial subgroup reveals a specific structural signature
Nucl. Acids Res. 2001 29: 1602-1607; doi:10.1093/nar/29.7.1602 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

David P. Kreil and Christos A. Ouzounis

Identification of thermophilic species by the amino acid compositions deduced from their genomes
Nucl. Acids Res. 2001 29: 1608-1615; doi:10.1093/nar/29.7.1608 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ling Qin, Pjotr Prins, John T. Jones, Herman Popeijus, Geert Smant, Jaap Bakker, and Johannes Helder

GenEST, a powerful bidirectional link between cDNA sequence data and gene expression profiles generated by cDNA-AFLP
Nucl. Acids Res. 2001 29: 1616-1622; doi:10.1093/nar/29.7.1616 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Qu Liang-Hu, Meng Qing, Zhou Hui, and Chen Yue-Qin

Identification of 10 novel snoRNA gene clusters from Arabidopsis thaliana
Nucl. Acids Res. 2001 29: 1623-1630; doi:10.1093/nar/29.7.1623 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Antony M. Jose, Garrett A. Soukup, and Ronald R. Breaker

Cooperative binding of effectors by an allosteric ribozyme
Nucl. Acids Res. 2001 29: 1631-1637; doi:10.1093/nar/29.7.1631 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Mary M. Purugganan, Sundeep Shah, John F. Kearney, and David B. Roth

Ku80 is required for addition of N nucleotides to V(D)J recombination junctions by terminal deoxynucleotidyl transferase
Nucl. Acids Res. 2001 29: 1638-1646; doi:10.1093/nar/29.7.1638 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Torbjørn Rognes

ParAlign: a parallel sequence alignment algorithm for rapid and sensitive database searches
Nucl. Acids Res. 2001 29: 1647-1652; doi:10.1093/nar/29.7.1647 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Graziella Cimino-Reale, Esterina Pascale, Eva Battiloro, Giuseppe Starace, Roberto Verna, and Ettore D’Ambrosio

The length of telomeric G-rich strand 3'-overhang measured by oligonucleotide ligation assay
Nucl. Acids Res. 2001 29: e35; doi:10.1093/nar/29.7.e35 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Fikret Erdogan, Roland Kirchner, Wolfgang Mann, Hans-Hilger Ropers, and Ulrike A. Nuber

Detection of mitochondrial single nucleotide polymorphisms using a primer elongation reaction on oligonucleotide microarrays
Nucl. Acids Res. 2001 29: e36; doi:10.1093/nar/29.7.e36 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Margherita Sosio, Elena Bossi, and Stefano Donadio

Assembly of large genomic segments in artificial chromosomes by homologous recombination in Escherichia coli
Nucl. Acids Res. 2001 29: e37; doi:10.1093/nar/29.7.e37 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Frank Diehl, Susanne Grahlmann, Markus Beier, and Jörg D. Hoheisel

Manufacturing DNA microarrays of high spot homogeneity and reduced background signal
Nucl. Acids Res. 2001 29: e38; doi:10.1093/nar/29.7.e38 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

H. E. Krestel, M. Mayford, P. H. Seeburg, and R. Sprengel

A GFP-equipped bidirectional expression module well suited for monitoring tetracycline-regulated gene expression in mouse
Nucl. Acids Res. 2001 29: e39; doi:10.1093/nar/29.7.e39 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Masakazu Nakano, Kazuhiko Odaka, Masakazu Ishimura, Saki Kondo, Naoto Tachikawa, Joe Chiba, Yumi Kanegae, and Izumu Saito

Efficient gene activation in cultured mammalian cells mediated by FLP recombinase-expressing recombinant adenovirus
Nucl. Acids Res. 2001 29: e40; doi:10.1093/nar/29.7.e40 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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