Nucleic Acids Research

Articles:

Perry M. Kim, Kimberly S. Paffett, Jachen A. Solinger, Wolf-Dietrich Heyer, and Jac A. Nickoloff

Spontaneous and double-strand break-induced recombination, and gene conversion tract lengths, are differentially affected by overexpression of wild-type or ATPase-defective yeast Rad54
Nucl. Acids Res. 2002 30: 2727-2735; doi:10.1093/nar/gkf413 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Duyen T. Dang, Weidong Zhao, Channing S. Mahatan, Deborah E. Geiman, and Vincent W. Yang

Opposing effects of Krüppel-like factor 4 (gut-enriched Krüppel-like factor) and Krüppel-like factor 5 (intestinal-enriched Krüppel-like factor) on the promoter of the Krüppel-like factor 4 gene
Nucl. Acids Res. 2002 30: 2736-2741; doi:10.1093/nar/gkf400 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Li Liu, Shuqiu Cheng, Anja J. van Brabant, and Eric B. Kmiec

Rad51p and Rad54p, but not Rad52p, elevate gene repair in Saccharomyces cerevisiae directed by modified single-stranded oligonucleotide vectors
Nucl. Acids Res. 2002 30: 2742-2750; doi:10.1093/nar/gkf397 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Dorte Renneberg, Emilie Bouliong, Ulrich Reber, Daniel Schümperli, and Christian J. Leumann

Antisense properties of tricyclo-DNA
Nucl. Acids Res. 2002 30: 2751-2757; doi:10.1093/nar/gkf412 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Liya Gu, Jianxin Wu, Bei-Bei Zhu, and Guo-Min Li

Deficiency of a novel mismatch repair activity in a bladder tumor cell line
Nucl. Acids Res. 2002 30: 2758-2763; doi:10.1093/nar/gkf410 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Andreas W. Rüfer and Brian Sauer

Non-contact positions impose site selectivity on Cre recombinase
Nucl. Acids Res. 2002 30: 2764-2771; doi:10.1093/nar/gkf399 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Deborah B. Schulman and David R. Setzer

Identification and characterization of transcription factor IIIA from Schizosaccharomyces pombe
Nucl. Acids Res. 2002 30: 2772-2781; doi:10.1093/nar/gkf385 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Christopher J. Nulf and David R. Corey

DNA assembly using bis-peptide nucleic acids (bisPNAs)
Nucl. Acids Res. 2002 30: 2782-2789; doi:10.1093/nar/gkf389 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Melanie P. Gygi, Mark D. Ferguson, Heather C. Mefford, Kevin P. Lund, Christine O’Day, Peiwen Zhou, Cynthia Friedman, Ger van den Engh, Mark L. Stolowitz, and Barbara J. Trask

Use of fluorescent sequence-specific polyamides to discriminate human chromosomes by microscopy and flow cytometry
Nucl. Acids Res. 2002 30: 2790-2799; doi:10.1093/nar/gkf406 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Alexandros G. Georgakilas, Paula V. Bennett, and Betsy M. Sutherland

High efficiency detection of bi-stranded abasic clusters in -irradiated DNA by putrescine
Nucl. Acids Res. 2002 30: 2800-2808; doi:10.1093/nar/gkf393 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Esther E. Biswas, Pei-Hua Chen, and Subhasis B. Biswas

Modulation of enzymatic activities of Escherichia coli DnaB helicase by single-stranded DNA-binding proteins
Nucl. Acids Res. 2002 30: 2809-2816; doi:10.1093/nar/gkf384 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Maria A. Graziewicz, Brian J. Day, and William C. Copeland

The mitochondrial DNA polymerase as a target of oxidative damage
Nucl. Acids Res. 2002 30: 2817-2824; doi:10.1093/nar/gkf392 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Mark P. McPike, Julie M. Sullivan, Jerry Goodisman, and James C. Dabrowiak

Footprinting, circular dichroism and UV melting studies on neomycin B binding to the packaging region of human immunodeficiency virus type-1 RNA
Nucl. Acids Res. 2002 30: 2825-2831; doi:10.1093/nar/gkf402 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ioannis Amarantos, Ioannis K. Zarkadis, and Dimitrios L. Kalpaxis

The identification of spermine binding sites in 16S rRNA allows interpretation of the spermine effect on ribosomal 30S subunit functions
Nucl. Acids Res. 2002 30: 2832-2843; doi:10.1093/nar/gkf404 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Christine Mayer and Uttam L. RajBhandary

Conformational change of Escherichia coli initiator methionyl-tRNA^fMet upon binding to methionyl-tRNA formyl transferase
Nucl. Acids Res. 2002 30: 2844-2850; doi:10.1093/nar/gkf411 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kazuko Shiroki, Chieko Ohsawa, Natuki Sugi, Motoaki Wakiyama, Kin-ichiro Miura, Manabu Watanabe, Yutaka Suzuki, and Sumio Sugano

Internal ribosome entry site-mediated translation of Smad5 in vivo: requirement for a nuclear event
Nucl. Acids Res. 2002 30: 2851-2861; doi:10.1093/nar/gkf408 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Chao Wei, Rose Skopp, Minoru Takata, Shunichi Takeda, and Carolyn M. Price

Effects of double-strand break repair proteins on vertebrate telomere structure
Nucl. Acids Res. 2002 30: 2862-2870; doi:10.1093/nar/gkf396 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Cristian Cañestro, Roser Gonzàlez-Duarte, and Ricard Albalat

Minisatellite instability at the Adh locus reveals somatic polymorphism in amphioxus
Nucl. Acids Res. 2002 30: 2871-2876; doi:10.1093/nar/gkf386 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Patrick J. Finn, Lei Sun, Satyam Nampalli, Haiguang Xiao, John R. Nelson, J. Anthony Mamone, Greg Grossmann, Parke K. Flick, Carl W. Fuller, and Shiv Kumar

Synthesis and application of charge-modified dye-labeled dideoxynucleoside-5'-triphosphates to ‘direct-load’ DNA sequencing
Nucl. Acids Res. 2002 30: 2877-2885; doi:10.1093/nar/gkf387 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Chiara Sabatti, Lars Rohlin, Min-Kyu Oh, and James C. Liao

Co-expression pattern from DNA microarray experiments as a tool for operon prediction
Nucl. Acids Res. 2002 30: 2886-2893; doi:10.1093/nar/gkf388 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Kristyna Stehlikova, Hana Kostrhunova, Jana Kasparkova, and Viktor Brabec

DNA bending and unwinding due to the major 1,2-GG intrastrand cross-link formed by antitumor cis-diamminedichloroplatinum(II) are flanking-base independent
Nucl. Acids Res. 2002 30: 2894-2898; doi:10.1093/nar/gkf405 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Imre Cserpán, Róbert Katona, Tünde Praznovszky, Edit Novák, Márta Rózsavölgyi, Erika Csonka, Mónika Mórocz, Katalin Fodor, and Gyula Hadlaczky

The chAB4 and NF1-related long-range multisequence DNA families are contiguous in the centromeric heterochromatin of several human chromosomes
Nucl. Acids Res. 2002 30: 2899-2905; doi:10.1093/nar/gkf382 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ippeita Dan, Norinobu M. Watanabe, Eriko Kajikawa, Takafumi Ishida, Akhilesh Pandey, and Akihiro Kusumi

Overlapping of MINK and CHRNE gene loci in the course of mammalian evolution
Nucl. Acids Res. 2002 30: 2906-2910; doi:10.1093/nar/gkf407 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Juliet M. Daniel, Christopher M. Spring, Howard C. Crawford, Albert B. Reynolds, and Akeel Baig

The p120^ctn-binding partner Kaiso is a bi-modal DNA-binding protein that recognizes both a sequence-specific consensus and methylated CpG dinucleotides
Nucl. Acids Res. 2002 30: 2911-2919; doi:10.1093/nar/gkf398 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kerby Shedden and Stephen Cooper

Analysis of cell-cycle gene expression in Saccharomyces cerevisiae using microarrays and multiple synchronization methods
Nucl. Acids Res. 2002 30: 2920-2929; doi:10.1093/nar/gkf414 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ying Chen, Rajiv P. Sharma, Robert H. Costa, Erminio Costa, and Dennis R. Grayson

On the epigenetic regulation of the human reelin promoter
Nucl. Acids Res. 2002 30: 2930-2939; doi:10.1093/nar/gkf401 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Subhra Chakraborty, Bhaskarjyoti Sarmah, Niranjan Chakraborty, and Asis Datta

Premature termination of RNA polymerase II mediated transcription of a seed protein gene in Schizosaccharomyces pombe
Nucl. Acids Res. 2002 30: 2940-2949; doi:10.1093/nar/gkf334 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Franca Fraternali and Luigi Cavallo

Parameter optimized surfaces (POPS): analysis of key interactions and conformational changes in the ribosome
Nucl. Acids Res. 2002 30: 2950-2960; doi:10.1093/nar/gkf373 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yi Zhang, Zhijie Li, Daniel S. Pilch, and Michael J. Leibowitz

Pentamidine inhibits catalytic activity of group I intron Ca.LSU by altering RNA folding
Nucl. Acids Res. 2002 30: 2961-2971; doi:10.1093/nar/gkf394 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Luciano De Haro and Ralf Janknecht

Functional analysis of the transcription factor ER71 and its activation of the matrix metalloproteinase-1 promoter
Nucl. Acids Res. 2002 30: 2972-2979; doi:10.1093/nar/gkf390 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Torunn Berge, Nigel S. Jenkins, Richard B. Hopkirk, Michael J. Waring, J. Michael Edwardson, and Robert M. Henderson

Structural perturbations in DNA caused by bis-intercalation of ditercalinium visualised by atomic force microscopy
Nucl. Acids Res. 2002 30: 2980-2986; doi:10.1093/nar/gkf409 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

G. Achaz, E. P. C. Rocha, P. Netter, and E. Coissac

Origin and fate of repeats in bacteria
Nucl. Acids Res. 2002 30: 2987-2994; doi:10.1093/nar/gkf391 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Conchita Vens, Els Dahmen-Mooren, Manon Verwijs-Janssen, Wim Blyweert, Lise Graversen, Harry Bartelink, and Adrian C. Begg

The role of DNA polymerase ß in determining sensitivity to ionizing radiation in human tumor cells
Nucl. Acids Res. 2002 30: 2995-3004; doi:10.1093/nar/gkf403 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jun Chen, Liang Ren Zhang, Ji Mei Min, and Li He Zhang

Studies on the synthesis of a G-rich octaoligoisonucleotide (isoT)₂(isoG)₄(isoT)₂ by the phosphotriester approach and its formation of G-quartet structure
Nucl. Acids Res. 2002 30: 3005-3014; doi:10.1093/nar/gkf395 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

J. H. A. Nagel, A. P. Gultyaev, K. J. Öistämö, K. Gerdes, and C. W. A. Pleij

A pH-jump approach for investigating secondary structure refolding kinetics in RNA
Nucl. Acids Res. 2002 30: e63; doi:10.1093/nar/gnf057 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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