Nucleic Acids Research

Articles:

Daniel R. Yazbeck, Kyung-Lyum Min, and Masad J. Damha

Molecular requirements for degradation of a modified sense RNA strand by Escherichia coli ribonuclease H1
Nucl. Acids Res. 2002 30: 3015-3025; doi:10.1093/nar/gkf429 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Harald Putzer, Ciarán Condon, Dominique Brechemier-Baey, Renata Brito, and Marianne Grunberg-Manago

Transfer RNA-mediated antitermination in vitro
Nucl. Acids Res. 2002 30: 3026-3033; doi:10.1093/nar/gkf415 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Akiko Kobayashi, Koji Akasaka, Masashi Kawaichi, and Tetsuro Kokubo

Functional interaction between TATA and upstream CACGTG elements regulates the temporally specific expression of Otx mRNAs during early embryogenesis of the sea urchin, Hemicentrotus pulcherrimus
Nucl. Acids Res. 2002 30: 3034-3044; doi:10.1093/nar/gkf439 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sebastian Richard Scholz, Christian Korn, Oleg Gimadutdinow, Michael Knoblauch, Alfred Pingoud, and Gregor Meiss

The effect of ICAD-S on the formation and intracellular distribution of a nucleolytically active caspase-activated DNase
Nucl. Acids Res. 2002 30: 3045-3051; doi:10.1093/nar/gkf431 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Gaurav Laroia and Robert J. Schneider

Alternate exon insertion controls selective ubiquitination and degradation of different AUF1 protein isoforms
Nucl. Acids Res. 2002 30: 3052-3058; doi:10.1093/nar/gkf444 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kazutaka Katoh, Kazuharu Misawa, Kei-ichi Kuma, and Takashi Miyata

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
Nucl. Acids Res. 2002 30: 3059-3066; doi:10.1093/nar/gkf436 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Stephen J. Langer, A. Paiman Ghafoori, Marshall Byrd, and Leslie Leinwand

A genetic screen identifies novel non-compatible loxP sites
Nucl. Acids Res. 2002 30: 3067-3077; doi:10.1093/nar/gkf421 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Dong-Yi Zhang, Daniel J. Carson, and Jun Ma

The role of TFIIB–RNA polymerase II interaction in start site selection in yeast cells
Nucl. Acids Res. 2002 30: 3078-3085; doi:10.1093/nar/gkf422 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Priya Handa, Narottam Acharya, and Umesh Varshney

Effects of mutations at tyrosine 66 and asparagine 123 in the active site pocket of Escherichia coli uracil DNA glycosylase on uracil excision from synthetic DNA oligomers: evidence for the occurrence of long-range interactions between the enzyme and substrate
Nucl. Acids Res. 2002 30: 3086-3095; doi:10.1093/nar/gkf425 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Dong Fang, Yoshiaki Tsuji, and Vijayasaradhi Setaluri

Selective down-regulation of tyrosinase family gene TYRP1 by inhibition of the activity of melanocyte transcription factor, MITF
Nucl. Acids Res. 2002 30: 3096-3106; doi:10.1093/nar/gkf424 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sangwoo Shim, Narina Bae, and Jin-Kwan Han

Bone morphogenetic protein-4-induced activation of Xretpos is mediated by Smads and Olf-1/EBF associated zinc finger (OAZ)
Nucl. Acids Res. 2002 30: 3107-3117; doi:10.1093/nar/gkf437 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Gary F. Gerard, R. Jason Potter, Michael D. Smith, Kim Rosenthal, Gulshan Dhariwal, Jun Lee, and Deb. K. Chatterjee

The role of template-primer in protection of reverse transcriptase from thermal inactivation
Nucl. Acids Res. 2002 30: 3118-3129; doi:10.1093/nar/gkf417 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Patrick J. Daniels, Doug Bittel, Irina V. Smirnova, Dennis R. Winge, and Glen K. Andrews

Mammalian metal response element-binding transcription factor-1 functions as a zinc sensor in yeast, but not as a sensor of cadmium or oxidative stress
Nucl. Acids Res. 2002 30: 3130-3140; doi:10.1093/nar/gkf432 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Alexey G. Vitreschak, Dmitry A. Rodionov, Andrey A. Mironov, and Mikhail S. Gelfand

Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation
Nucl. Acids Res. 2002 30: 3141-3151; doi:10.1093/nar/gkf433 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jane A. Thanassi, Sandra L. Hartman-Neumann, Thomas J. Dougherty, Brian A. Dougherty, and Michael J. Pucci

Identification of 113 conserved essential genes using a high-throughput gene disruption system in Streptococcus pneumoniae
Nucl. Acids Res. 2002 30: 3152-3162; doi:10.1093/nar/gkf418 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Alexey S. Kutsenko, Rinat Z. Gizatullin, Ali N. Al-Amin, Fuli Wang, Sergei M. Kvasha, Raf M. Podowski, Yuri G. Matushkin, Anita Gyanchandani, Olga V. Muravenko, Viktor G. Levitsky, Nikolay A. Kolchanov, Alexei I. Protopopov, Vladimir I. Kashuba, Lev L. Kisselev, Wyeth Wasserman, Claes Wahlestedt, and Eugene R. Zabarovsky

NotI flanking sequences: a tool for gene discovery and verification of the human genome
Nucl. Acids Res. 2002 30: 3163-3170; doi:10.1093/nar/gkf428 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ana Maria Soto, Besik I. Kankia, Prasad Dande, Barry Gold, and Luis A. Marky

Thermodynamic and hydration effects for the incorporation of a cationic 3-aminopropyl chain into DNA
Nucl. Acids Res. 2002 30: 3171-3180; doi:10.1093/nar/gkf430 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Megon Walker, Vladimir Pavlovic, and Simon Kasif

A comparative genomic method for computational identification of prokaryotic translation initiation sites
Nucl. Acids Res. 2002 30: 3181-3191; doi:10.1093/nar/gkf423 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Heike Uhlmann-Schiffler, Stephanie Seinsoth, and Hans Stahl

Preformed hexamers of SV40 T antigen are active in RNA and origin-DNA unwinding
Nucl. Acids Res. 2002 30: 3192-3201; doi:10.1093/nar/gkf416 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Mizuho Tomioka, Masazumi Nishimoto, Satoru Miyagi, Tomoko Katayanagi, Nobutaka Fukui, Hitoshi Niwa, Masami Muramatsu, and Akihiko Okuda

Identification of Sox-2 regulatory region which is under the control of Oct-3/4–Sox-2 complex
Nucl. Acids Res. 2002 30: 3202-3213; doi:10.1093/nar/gkf435 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Martin C. Frith, John L. Spouge, Ulla Hansen, and Zhiping Weng

Statistical significance of clusters of motifs represented by position specific scoring matrices in nucleotide sequences
Nucl. Acids Res. 2002 30: 3214-3224; doi:10.1093/nar/gkf438 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

David C. Walker, Theonie Georgiou, Ansgar J. Pommer, Daniel Walker, Geoffrey R. Moore, Colin Kleanthous, and Richard James

Mutagenic scan of the H-N-H motif of colicin E9: implications for the mechanistic enzymology of colicins, homing enzymes and apoptotic endonucleases
Nucl. Acids Res. 2002 30: 3225-3234; doi:10.1093/nar/gkf420 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Tor-Kristian Jenssen, Mette Langaas, Winston P. Kuo, Birgitte Smith-Sørensen, Ola Myklebost, and Eivind Hovig

Analysis of repeatability in spotted cDNA microarrays
Nucl. Acids Res. 2002 30: 3235-3244; doi:10.1093/nar/gkf441 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Rongjia Zhou, Nathalie Bonneaud, Chao-Xing Yuan, Pascal de Santa Barbara, Brigitte Boizet, Schomber Tibor, Gerd Scherer, Robert G. Roeder, Francis Poulat, and Philippe Berta

SOX9 interacts with a component of the human thyroid hormone receptor-associated protein complex
Nucl. Acids Res. 2002 30: 3245-3252; doi:10.1093/nar/gkf443 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Carol M. Rubin, Richard H. Kimura, and Carl W. Schmid

Selective stimulation of translational expression by Alu RNA
Nucl. Acids Res. 2002 30: 3253-3261; doi:10.1093/nar/gkf419 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Dan Liang, Hui Zhou, Peng Zhang, Yue-Qin Chen, Xiao Chen, Chun-Long Chen, and Liang-Hu Qu

A novel gene organization: intronic snoRNA gene clusters from Oryza sativa
Nucl. Acids Res. 2002 30: 3262-3272; doi:10.1093/nar/gkf426 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yasuo Matsuzaki, Noritaka Adachi, and Hideki Koyama

Vertebrate cells lacking FEN-1 endonuclease are viable but hypersensitive to methylating agents and H₂O₂
Nucl. Acids Res. 2002 30: 3273-3277; doi:10.1093/nar/gkf440 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Roberta Pietrobono, Maria Grazia Pomponi, Elisabetta Tabolacci, Ben Oostra, Pietro Chiurazzi, and Giovanni Neri

Quantitative analysis of DNA demethylation and transcriptional reactivation of the FMR1 gene in fragile X cells treated with 5-azadeoxycytidine
Nucl. Acids Res. 2002 30: 3278-3285; doi:10.1093/nar/gkf434 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Pin-Chi Tang, Huey-Chung Huang, Sui-Chi Wang, Jen-Chong Jeng, and You-Di Liao

Regulation of ribonuclease expression by estradiol in Rana catesbeiana (Bullfrog)
Nucl. Acids Res. 2002 30: 3286-3293; doi:10.1093/nar/gkf442 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Heike A. Behrensdorf, Marc Pignot, Norbert Windhab, and Andreas Kappel

Rapid parallel mutation scanning of gene fragments using a microelectronic protein–DNA chip format
Nucl. Acids Res. 2002 30: e64; doi:10.1093/nar/gnf063 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Anne-Lyse Ducrest, Mario Amacker, Joachim Lingner, and Markus Nabholz

Detection of promoter activity by flow cytometric analysis of GFP reporter expression
Nucl. Acids Res. 2002 30: e65; doi:10.1093/nar/gnf064 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Mats Nilsson, Mats Gullberg, Fredrik Dahl, Karoly Szuhai, and Anton K. Raap

Real-time monitoring of rolling-circle amplification using a modified molecular beacon design
Nucl. Acids Res. 2002 30: e66; doi:10.1093/nar/gnf065 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

H. Oberacher, P. J. Oefner, G. Hölzl, A. Premstaller, K. Davis, and C. G. Huber

Re-sequencing of multiple single nucleotide polymorphisms by liquid chromatography–electrospray ionization mass spectrometry
Nucl. Acids Res. 2002 30: e67; doi:10.1093/nar/gnf066 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Langping He, Patrick F. Chinnery, Steve E. Durham, Emma L. Blakely, Theresa M. Wardell, Gillian M. Borthwick, Robert W. Taylor, and Douglass M. Turnbull

Detection and quantification of mitochondrial DNA deletions in individual cells by real-time PCR
Nucl. Acids Res. 2002 30: e68; doi:10.1093/nar/gnf067 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Thomas K. Bane, James F. LeBlanc, Terry D. Lee, and Arthur D. Riggs

DNA affinity capture and protein profiling by SELDI-TOF mass spectrometry: effect of DNA methylation
Nucl. Acids Res. 2002 30: e69; doi:10.1093/nar/gnf068 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Katarina Lindroos, Snaevar Sigurdsson, Karin Johansson, Lars Rönnblom, and Ann-Christine Syvänen

Multiplex SNP genotyping in pooled DNA samples by a four-colour microarray system
Nucl. Acids Res. 2002 30: e70; doi:10.1093/nar/gnf069 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Ilgar Mamedov, Anastasia Batrak, Anton Buzdin, Elena Arzumanyan, Yuri Lebedev, and Eugene D. Sverdlov

Genome-wide comparison of differences in the integration sites of interspersed repeats between closely related genomes
Nucl. Acids Res. 2002 30: e71; doi:10.1093/nar/gnf071 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Fayi Song, Feimeng Zhou, Jun Wang, Nongjian Tao, Jianqiao Lin, Robert L. Vellanoweth, Yvonne Morquecho, and Janel Wheeler-Laidman

Detection of oligonucleotide hybridization at femtomolar level and sequence-specific gene analysis of the Arabidopsis thaliana leaf extract with an ultrasensitive surface plasmon resonance spectrometer
Nucl. Acids Res. 2002 30: e72; doi:10.1093/nar/gnf072 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Olga I. Lavrik, Dmitry M. Kolpashchikov, Rajendra Prasad, Robert W. Sobol, and Samuel H. Wilson

Binary system for selective photoaffinity labeling of base excision repair DNA polymerases
Nucl. Acids Res. 2002 30: e73; doi:10.1093/nar/gnf073 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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