Nucleic Acids Research

Articles:

Chris P. Ponting

Novel domains and orthologues of eukaryotic transcription elongation factors
Nucl. Acids Res. 2002 30: 3643-3652; doi:10.1093/nar/gkf498 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Baomin Li and Lucio Comai

Displacement of DNA-PKcs from DNA ends by the Werner syndrome protein
Nucl. Acids Res. 2002 30: 3653-3661; doi:10.1093/nar/gkf488 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Xueguang Sun, Igor Zhulin, and Roger M. Wartell

Predicted structure and phyletic distribution of the RNA-binding protein Hfq
Nucl. Acids Res. 2002 30: 3662-3671; doi:10.1093/nar/gkf508 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Pnina Weisman-Shomer, Esther Cohen, and Michael Fry

Distinct domains in the CArG-box binding factor A destabilize tetraplex forms of the fragile X expanded sequence d(CGG)_n
Nucl. Acids Res. 2002 30: 3672-3681; doi:10.1093/nar/gkf506 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Katsumi Kawasaki, Sayako Maruyama, Minoru Nakayama, Kohji Matsumoto, and Takehiko Shibata

Drosophila melanogaster RECQ5/QE DNA helicase: stimulation by GTP binding
Nucl. Acids Res. 2002 30: 3682-3691; doi:10.1093/nar/gkf487 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Pascal Dubessay, Christophe Ravel, Patrick Bastien, Lucien Crobu, Jean-Pierre Dedet, Michel Pagès, and Christine Blaineau

The switch region on Leishmania major chromosome 1 is not required for mitotic stability or gene expression, but appears to be essential
Nucl. Acids Res. 2002 30: 3692-3697; doi:10.1093/nar/gkf510 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

James P. Madigan, Heather L. Chotkowski, and Robert L. Glaser

DNA double-strand break-induced phosphorylation of Drosophila histone variant H2Av helps prevent radiation-induced apoptosis
Nucl. Acids Res. 2002 30: 3698-3705; doi:10.1093/nar/gkf496 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yong Li and Sidney Altman

Partial reconstitution of human RNase P in HeLa cells between its RNA subunit with an affinity tag and the intact protein components
Nucl. Acids Res. 2002 30: 3706-3711; doi:10.1093/nar/gkf499 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Valentina Rapozzi, Brigitte E. A. Burm, Susanna Cogoi, Gijs A. van der Marel, Jacques H. van Boom, Franco Quadrifoglio, and Luigi E. Xodo

Antiproliferative effect in chronic myeloid leukaemia cells by antisense peptide nucleic acids
Nucl. Acids Res. 2002 30: 3712-3721; doi:10.1093/nar/gkf451 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

M. Saminathan, Thresia Thomas, Akira Shirahata, C. K. S. Pillai, and T. J. Thomas

Polyamine structural effects on the induction and stabilization of liquid crystalline DNA: potential applications to DNA packaging, gene therapy and polyamine therapeutics
Nucl. Acids Res. 2002 30: 3722-3731; doi:10.1093/nar/gkf503 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Brian Tjaden, Rini Mukherjee Saxena, Sergey Stolyar, David R. Haynor, Eugene Kolker, and Carsten Rosenow

Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays
Nucl. Acids Res. 2002 30: 3732-3738; doi:10.1093/nar/gkf505 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Jia Liu Wolfe, Tomohiko Kawate, Alexei Belenky, and Vincent Stanton, Jr

Synthesis and polymerase incorporation of 5'-amino-2',5'-dideoxy-5'-N-triphosphate nucleotides
Nucl. Acids Res. 2002 30: 3739-3747; doi:10.1093/nar/gkf502 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Kazuhisa Fujimoto, Hirokazu Iida, Masako Kawakami, Toshikazu Bando, Zhi-Fu Tao, and Hiroshi Sugiyama

Sequence-specific protection of plasmid DNA from restriction endonuclease hydrolysis by pyrrole–imidazole–cyclopropapyrroloindole conjugates
Nucl. Acids Res. 2002 30: 3748-3753; doi:10.1093/nar/gkf486 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Qiang Xu, Barmak Modrek, and Christopher Lee

Genome-wide detection of tissue-specific alternative splicing in the human transcriptome
Nucl. Acids Res. 2002 30: 3754-3766; doi:10.1093/nar/gkf492 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Liviu Movileanu, James M. Benevides, and George J. Thomas, Jr

Determination of base and backbone contributions to the thermodynamics of premelting and melting transitions in B DNA
Nucl. Acids Res. 2002 30: 3767-3777; doi:10.1093/nar/gkf471 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Anton B. Guliaev, Bo Hang, and B. Singer

Structural insights by molecular dynamics simulations into differential repair efficiency for ethano-A versus etheno-A adducts by the human alkylpurine-DNA N-glycosylase
Nucl. Acids Res. 2002 30: 3778-3787; doi:10.1093/nar/gkf494 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Natalya Bodyak, Peter M. Kang, Makoto Hiromura, Indra Sulijoadikusumo, Nobuo Horikoshi, Konstantin Khrapko, and Anny Usheva

Gene expression profiling of the aging mouse cardiac myocytes
Nucl. Acids Res. 2002 30: 3788-3794; doi:10.1093/nar/gkf497 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Kei-ichi Takata, Gen Ishikawa, Fumiko Hirose, and Kengo Sakaguchi

Drosophila damage-specific DNA-binding protein 1 (D-DDB1) is controlled by the DRE/DREF system
Nucl. Acids Res. 2002 30: 3795-3808; doi:10.1093/nar/gkf490 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Joseph Locker, David Ghosh, Phuong-Van Luc, and Jianhua Zheng

Definition and prediction of the full range of transcription factor binding sites—the hepatocyte nuclear factor 1 dimeric site
Nucl. Acids Res. 2002 30: 3809-3817; doi:10.1093/nar/gkf484 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Andrew R. McNamara, Paul J. Hurd, Alexander E. F. Smith, and Kevin G. Ford

Characterisation of site-biased DNA methyltransferases: specificity, affinity and subsite relationships
Nucl. Acids Res. 2002 30: 3818-3830; doi:10.1093/nar/gkf501 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Rachel Deplus, Carmen Brenner, Wendy A. Burgers, Pascale Putmans, Tony Kouzarides, Yvan de Launoit, and François Fuks

Dnmt3L is a transcriptional repressor that recruits histone deacetylase
Nucl. Acids Res. 2002 30: 3831-3838; doi:10.1093/nar/gkf509 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Qing Xu, R. D. Morgan, R. J. Roberts, S. Y. Xu, L. J. van Doorn, J. P. Donahue, G. G. Miller, and Martin J. Blaser

Functional analysis of iceA1, a CATG-recognizing restriction endonuclease gene in Helicobacter pylori
Nucl. Acids Res. 2002 30: 3839-3847; doi:10.1093/nar/gkf504 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Inusha U. De Silva, Peter J. McHugh, Peter H. Clingen, and John A. Hartley

Defects in interstrand cross-link uncoupling do not account for the extreme sensitivity of ERCC1 and XPF cells to cisplatin
Nucl. Acids Res. 2002 30: 3848-3856; doi:10.1093/nar/gkf479 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Heike A. Held and Steven A. Benner

Challenging artificial genetic systems: thymidine analogs with 5-position sulfur functionality
Nucl. Acids Res. 2002 30: 3857-3869; doi:10.1093/nar/gkf500 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Lenny M. Seligman, Karen M. Chisholm, Brett S. Chevalier, Meggen S. Chadsey, Samuel T. Edwards, Jeremiah H. Savage, and Adeline L. Veillet

Mutations altering the cleavage specificity of a homing endonuclease
Nucl. Acids Res. 2002 30: 3870-3879; doi:10.1093/nar/gkf495 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Helen M. Cohen, Dan S. Tawfik, and Andrew D. Griffiths

Promiscuous methylation of non-canonical DNA sites by HaeIII methyltransferase
Nucl. Acids Res. 2002 30: 3880-3885; doi:10.1093/nar/gkf507 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yuh-Jyh Hu

Prediction of consensus structural motifs in a family of coregulated RNA sequences
Nucl. Acids Res. 2002 30: 3886-3893; doi:10.1093/nar/gkf485 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Vasily Ramensky, Peer Bork, and Shamil Sunyaev

Human non-synonymous SNPs: server and survey
Nucl. Acids Res. 2002 30: 3894-3900; doi:10.1093/nar/gkf493 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Isidore Rigoutsos, Tien Huynh, Aris Floratos, Laxmi Parida, and Daniel Platt

Dictionary-driven protein annotation
Nucl. Acids Res. 2002 30: 3901-3916; doi:10.1093/nar/gkf464 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Birgit Liss

Improved quantitative real-time RT–PCR for expression profiling of individual cells
Nucl. Acids Res. 2002 30: e89; doi:10.1093/nar/gnf088 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Zuwen Zhang and Beat Lutz

Cre recombinase-mediated inversion using lox66 and lox71: method to introduce conditional point mutations into the CREB-binding protein
Nucl. Acids Res. 2002 30: e90; doi:10.1093/nar/gnf089 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Anton Simeonov and Theo T. Nikiforov

Single nucleotide polymorphism genotyping using short, fluorescently labeled locked nucleic acid (LNA) probes and fluorescence polarization detection
Nucl. Acids Res. 2002 30: e91; doi:10.1093/nar/gnf090 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Joaquim Jaumot, Núria Escaja, Raimundo Gargallo, Carlos González, Enrique Pedroso, and Romà Tauler

Multivariate curve resolution: a powerful tool for the analysis of conformational transitions in nucleic acids
Nucl. Acids Res. 2002 30: e92; doi:10.1093/nar/gnf091 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Corrigenda:

Corrigendum
Nucl. Acids Res. 2002 30: 3917; doi:10.1093/nar/gkf525 [Extract] [FREE Full Text] [Print PDF] [Request Permissions]  

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