Nucleic Acids Research

Articles:

Anja Seybert, David J. Scott, Sarah Scaife, Martin R. Singleton, and Dale B. Wigley

Biochemical characterisation of the clamp/clamp loader proteins from the euryarchaeon Archaeoglobus fulgidus
Nucl. Acids Res. 2002 30: 4329-4338; doi:10.1093/nar/gkf584 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Narendra Sankar, Jerry Machado, Parween Abdulla, Arthur J. Hilliker, and Imogen R. Coe

Comparative genomic analysis of equilibrative nucleoside transporters suggests conserved protein structure despite limited sequence identity
Nucl. Acids Res. 2002 30: 4339-4350; doi:10.1093/nar/gkf564 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Eduardo P. C. Rocha, Olivier Pradillon, Hung Bui, Chalom Sayada, and Erick Denamur

A new family of highly variable proteins in the Chlamydophila pneumoniae genome
Nucl. Acids Res. 2002 30: 4351-4360; doi:10.1093/nar/gkf571 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Orna Dahan and Martin Kupiec

Mutations in genes of Saccharomyces cerevisiae encoding pre-mRNA splicing factors cause cell cycle arrest through activation of the spindle checkpoint
Nucl. Acids Res. 2002 30: 4361-4370; doi:10.1093/nar/gkf563 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Luis R. Comolli, Nikolai B. Ulyanov, Ana Maria Soto, Luis A. Marky, Thomas L. James, and William H. Gmeiner

NMR structure of the 3' stem–loop from human U4 snRNA
Nucl. Acids Res. 2002 30: 4371-4379; doi:10.1093/nar/gkf560 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Christian P. Fetzer, Daniel J. Hogan, and Hans J. Lipps

A PIWI homolog is one of the proteins expressed exclusively during macronuclear development in the ciliate Stylonychia lemnae
Nucl. Acids Res. 2002 30: 4380-4386; doi:10.1093/nar/gkf579 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Farid A. Kadyrov and John W. Drake

Characterization of DNA synthesis catalyzed by bacteriophage T4 replication complexes reconstituted on synthetic circular substrates
Nucl. Acids Res. 2002 30: 4387-4397; doi:10.1093/nar/gkf576 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sonia López de Quinto, Margarita Sáiz, Diana de la Morena, Francisco Sobrino, and Encarnación Martínez-Salas

IRES-driven translation is stimulated separately by the FMDV 3'-NCR and poly(A) sequences
Nucl. Acids Res. 2002 30: 4398-4405; doi:10.1093/nar/gkf569 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sara Pagans, Miguel Ortiz-Lombardía, Ma Lluïsa Espinás, Jordi Bernués, and Fernando Azorín

The Drosophila transcription factor tramtrack (TTK) interacts with Trithorax-like (GAGA) and represses GAGA-mediated activation
Nucl. Acids Res. 2002 30: 4406-4413; doi:10.1093/nar/gkf570 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Luis Quijada, Cristina Guerra-Giraldez, Maciej Drozdz, Claudia Hartmann, Henriette Irmer, Claudia Ben-Dov, Marina Cristodero, Martina Ding, and Christine Clayton

Expression of the human RNA-binding protein HuR in Trypanosoma brucei increases the abundance of mRNAs containing AU-rich regulatory elements
Nucl. Acids Res. 2002 30: 4414-4424; doi:10.1093/nar/gkf577 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Martijn de Jager, Claire Wyman, Dik C. van Gent, and Roland Kanaar

DNA end-binding specificity of human Rad50/Mre11 is influenced by ATP
Nucl. Acids Res. 2002 30: 4425-4431; doi:10.1093/nar/gkf574 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Qi Jin, Zhenghong Yuan, Jianguo Xu, Yu Wang, Yan Shen, Weichuan Lu, Jinhua Wang, Hong Liu, Jian Yang, Fan Yang, Xiaobing Zhang, Jiyu Zhang, Guowei Yang, Hongtao Wu, Di Qu, Jie Dong, Lilian Sun, Ying Xue, Ailan Zhao, Yishan Gao, Junping Zhu, Biao Kan, Keyue Ding, Shuxia Chen, Hongsong Cheng, Zhijian Yao, Bingkun He, Runsheng Chen, Dalong Ma, Boqin Qiang, Yumei Wen, Yunde Hou, and Jun Yu

Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157
Nucl. Acids Res. 2002 30: 4432-4441; doi:10.1093/nar/gkf566 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Panayiotis V. Benos, Martha L. Bulyk, and Gary D. Stormo

Additivity in protein–DNA interactions: how good an approximation is it?
Nucl. Acids Res. 2002 30: 4442-4451; doi:10.1093/nar/gkf578 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

K. Wecker, M. C. Bonnet, E. F. Meurs, and M. Delepierre

The role of the phosphorus BI–BII transition in protein–DNA recognition: the NF-B complex
Nucl. Acids Res. 2002 30: 4452-4459; doi:10.1093/nar/gkf559 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Dong Yu, Ekambar R. Kandimalla, Lakshmi Bhagat, Jin-Yan Tang, Yanping Cong, Jimmy Tang, and Sudhir Agrawal

‘Immunomers’—novel 3'–3'-linked CpG oligodeoxyribonucleotides as potent immunomodulatory agents
Nucl. Acids Res. 2002 30: 4460-4469; doi:10.1093/nar/gkf582 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Gérald Gavory, Mark Farrow, and Shankar Balasubramanian

Minimum length requirement of the alignment domain of human telomerase RNA to sustain catalytic activity in vitro
Nucl. Acids Res. 2002 30: 4470-4480; doi:10.1093/nar/gkf575 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ningwen Tai, Yuyan Ding, John C. Schmitz, and Edward Chu

Identification of critical amino acid residues on human dihydrofolate reductase protein that mediate RNA recognition
Nucl. Acids Res. 2002 30: 4481-4488; doi:10.1093/nar/gkf562 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Xi Zheng, Roald Ravatn, Yong Lin, Wei-Chung Shih, Arnold Rabson, Roger Strair, Eliezer Huberman, Allan Conney, and Khew-Voon Chin

Gene expression of TPA induced differentiation in HL-60 cells by DNA microarray analysis
Nucl. Acids Res. 2002 30: 4489-4499; doi:10.1093/nar/gkf580 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Partho Sarothi Ray and Saumitra Das

La autoantigen is required for the internal ribosome entry site-mediated translation of Coxsackievirus B3 RNA
Nucl. Acids Res. 2002 30: 4500-4508; doi:10.1093/nar/gkf583 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Mary J. Clancy, Mary Eileen Shambaugh, Candace S. Timpte, and Joseph A. Bokar

Induction of sporulation in Saccharomyces cerevisiae leads to the formation of N⁶-methyladenosine in mRNA: a potential mechanism for the activity of the IME4 gene
Nucl. Acids Res. 2002 30: 4509-4518; doi:10.1093/nar/gkf573 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Katsumi Kasashima, Eiji Sakashita, Kuniaki Saito, and Hiroshi Sakamoto

Complex formation of the neuron-specific ELAV-like Hu RNA-binding proteins
Nucl. Acids Res. 2002 30: 4519-4526; doi:10.1093/nar/gkf567 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sacha Baginsky and Wilhelm Gruissem

Endonucleolytic activation directs dark-induced chloroplast mRNA degradation
Nucl. Acids Res. 2002 30: 4527-4533; doi:10.1093/nar/gkf561 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Christopher E. Pearson, Mandy Tam, Yuh-Hwa Wang, S. Erin Montgomery, Arvin C. Dar, John D. Cleary, and Kerrie Nichol

Slipped-strand DNAs formed by long (CAG)·(CTG) repeats: slipped-out repeats and slip-out junctions
Nucl. Acids Res. 2002 30: 4534-4547; doi:10.1093/nar/gkf572 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Guy Perrière and Jean Thioulouse

Use and misuse of correspondence analysis in codon usage studies
Nucl. Acids Res. 2002 30: 4548-4555; doi:10.1093/nar/gkf565 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Trine J. Meza, Biljana Stangeland, Inderjit S. Mercy, Magne Skårn, Dag A. Nymoen, Anita Berg, Melinka A. Butenko, Anne-Mari Håkelien, Camilla Haslekås, Leonardo A. Meza-Zepeda, and Reidunn B. Aalen

Analyses of single-copy Arabidopsis T-DNA-transformed lines show that the presence of vector backbone sequences, short inverted repeats and DNA methylation is not sufficient or necessary for the induction of transgene silencing
Nucl. Acids Res. 2002 30: 4556-4566; doi:10.1093/nar/gkf568 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Francisca Barceló, Damiana Capó, and José Portugal

Thermodynamic characterization of the multivalent binding of chartreusin to DNA
Nucl. Acids Res. 2002 30: 4567-4573; doi:10.1093/nar/gkf558 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

J. Lin, J. Qian, D. Greenbaum, P. Bertone, R. Das, N. Echols, A. Senes, B. Stenger, and M. Gerstein

GeneCensus: genome comparisons in terms of metabolic pathway activity and protein family sharing
Nucl. Acids Res. 2002 30: 4574-4582; doi:10.1093/nar/gkf555 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Adel M. Talaat, Susan T. Howard, Walker Hale IV, Rick Lyons, Harold Garner, and Stephen Albert Johnston

Genomic DNA standards for gene expression profiling in Mycobacterium tuberculosis
Nucl. Acids Res. 2002 30: e104; doi:10.1093/nar/gnf103 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Dragana Korencic, Dieter Söll, and Alexandre Ambrogelly

A one-step method for in vitro production of tRNA transcripts
Nucl. Acids Res. 2002 30: e105; doi:10.1093/nar/gnf104 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Simon Kasif, Zhiping Weng, Adnan Derti, Richard Beigel, and Charles DeLisi

A computational framework for optimal masking in the synthesis of oligonucleotide microarrays
Nucl. Acids Res. 2002 30: e106; doi:10.1093/nar/gnf105 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Andrew C. Tolonen, Dinu F. Albeanu, Julia F. Corbett, Heather Handley, Charlotte Henson, and Pratap Malik

Optimized in situ construction of oligomers on an array surface
Nucl. Acids Res. 2002 30: e107; doi:10.1093/nar/gnf106 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

J. Colin Cox, Andrew Hayhurst, Jay Hesselberth, Travis S. Bayer, George Georgiou, and Andrew D. Ellington

Automated selection of aptamers against protein targets translated in vitro: from gene to aptamer
Nucl. Acids Res. 2002 30: e108; doi:10.1093/nar/gnf107 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Md. Talat Nasim, H. M. Chowdhury, and I. C. Eperon

A double reporter assay for detecting changes in the ratio of spliced and unspliced mRNA in mammalian cells
Nucl. Acids Res. 2002 30: e109; doi:10.1093/nar/gnf108 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Aguan Wei, Alex Yuan, Gloria Fawcett, Alice Butler, Theodore Davis, Shuang-yong Xu, and Lawrence Salkoff

Efficient isolation of targeted Caenorhabditis elegans deletion strains using highly thermostable restriction endonucleases and PCR
Nucl. Acids Res. 2002 30: e110; doi:10.1093/nar/gnf109 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Steve Smith, Linda Vigilant, and Phillip A. Morin

The effects of sequence length and oligonucleotide mismatches on 5' exonuclease assay efficiency
Nucl. Acids Res. 2002 30: e111; doi:10.1093/nar/gnf110 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Davide Ferrari and Alessio Peracchi

A continuous kinetic assay for RNA-cleaving deoxyribozymes, exploiting ethidium bromide as an extrinsic fluorescent probe
Nucl. Acids Res. 2002 30: e112; doi:10.1093/nar/gnf111 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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