Nucleic Acids Research

Articles:

Mohammed Alanazi, Steven A. Leadon, and Isabel Mellon

Global genome removal of thymine glycol in Escherichia coli requires endonuclease III but the persistence of processed repair intermediates rather than thymine glycol correlates with cellular sensitivity to high doses of hydrogen peroxide
Nucl. Acids Res. 2002 30: 4583-4591; doi:10.1093/nar/gkf588 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Federica Gemignani, Peter Sazani, Paul Morcos, and Ryszard Kole

Temperature-dependent splicing of ß-globin pre-mRNA
Nucl. Acids Res. 2002 30: 4592-4598; doi:10.1093/nar/gkf607 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Alexis Kertsburg and Garrett A. Soukup

A versatile communication module for controlling RNA folding and catalysis
Nucl. Acids Res. 2002 30: 4599-4606; doi:10.1093/nar/gkf596 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Liwang Cui, Qi Fan, and Jinfang Li

The malaria parasite Plasmodium falciparum encodes members of the Puf RNA-binding protein family with conserved RNA binding activity
Nucl. Acids Res. 2002 30: 4607-4617; doi:10.1093/nar/gkf600 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Anh Tuân Phan and Jean-Louis Mergny

Human telomeric DNA: G-quadruplex, i-motif and Watson–Crick double helix
Nucl. Acids Res. 2002 30: 4618-4625; doi:10.1093/nar/gkf597 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Francisca Diaz, Maria Pilar Bayona-Bafaluy, Michele Rana, Marialejandra Mora, Huiling Hao, and Carlos T. Moraes

Human mitochondrial DNA with large deletions repopulates organelles faster than full-length genomes under relaxed copy number control
Nucl. Acids Res. 2002 30: 4626-4633; doi:10.1093/nar/gkf602 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Caroline Dreuillet, Jeanne Tillit, Michel Kress, and Michèle Ernoult-Lange

In vivo and in vitro interaction between human transcription factor MOK2 and nuclear lamin A/C
Nucl. Acids Res. 2002 30: 4634-4642; doi:10.1093/nar/gkf587 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Arnold M. Kiss, Beáta E. Jády, Xavier Darzacq, Céline Verheggen, Edouard Bertrand, and Tamás Kiss

A Cajal body-specific pseudouridylation guide RNA is composed of two box H/ACA snoRNA-like domains
Nucl. Acids Res. 2002 30: 4643-4649; doi:10.1093/nar/gkf592 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Girish C. Shukla, Andrea J. Cole, Rosemary C. Dietrich, and Richard A. Padgett

Domains of human U4atac snRNA required for U12-dependent splicing in vivo
Nucl. Acids Res. 2002 30: 4650-4657; doi:10.1093/nar/gkf609 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Munehiko Asayama, Hideki Kato, Junko Shibato, Makoto Shirai, and Takashi Ohyama

The curved DNA structure in the 5'-upstream region of the light-responsive genes: its universality, binding factor and function for cyanobacterial psbA transcription
Nucl. Acids Res. 2002 30: 4658-4666; doi:10.1093/nar/gkf605 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sylvie Bonnet-Corven, Yann Audic, Francis Omilli, and H. Beverley Osborne

An analysis of the sequence requirements of EDEN-BP for specific RNA binding
Nucl. Acids Res. 2002 30: 4667-4674; doi:10.1093/nar/gkf586 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kimitsune Ishizaki, Yuu Shimizu-Ueda, Sachiko Okada, Masayuki Yamamoto, Masaki Fujisawa, Katsuyuki T. Yamato, Hideya Fukuzawa, and Kanji Ohyama

Multicopy genes uniquely amplified in the Y chromosome-specific repeats of the liverwort Marchantia polymorpha
Nucl. Acids Res. 2002 30: 4675-4681; doi:10.1093/nar/gkf604 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Lucien Junior Bergeron and Jean-Pierre Perreault

Development and comparison of procedures for the selection of delta ribozyme cleavage sites within the hepatitis B virus
Nucl. Acids Res. 2002 30: 4682-4691; doi:10.1093/nar/gkf598 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kensaku Sakamoto, Akiko Hayashi, Ayako Sakamoto, Daisuke Kiga, Hiroshi Nakayama, Akiko Soma, Takatsugu Kobayashi, Makoto Kitabatake, Koji Takio, Kazuki Saito, Mikako Shirouzu, Ichiro Hirao, and Shigeyuki Yokoyama

Site-specific incorporation of an unnatural amino acid into proteins in mammalian cells
Nucl. Acids Res. 2002 30: 4692-4699; doi:10.1093/nar/gkf589 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Roberto J. Pezza, Marcos A. Villarreal, Guillermo G. Montich, and Carlos E. Argaraña

Vanadate inhibits the ATPase activity and DNA binding capability of bacterial MutS. A structural model for the vanadate–MutS interaction at the Walker A motif
Nucl. Acids Res. 2002 30: 4700-4708; doi:10.1093/nar/gkf606 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Heike Markel, John Chandler, and Wolfgang Werr

Translational fusions with the engrailed repressor domain efficiently convert plant transcription factors into dominant-negative functions
Nucl. Acids Res. 2002 30: 4709-4719; doi:10.1093/nar/gkf591 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

G. M. J. Segers-Nolten, C. Wyman, N. Wijgers, W. Vermeulen, A. T. M. Lenferink, J. H. J. Hoeijmakers, J. Greve, and C. Otto

Scanning confocal fluorescence microscopy for single molecule analysis of nucleotide excision repair complexes
Nucl. Acids Res. 2002 30: 4720-4727; doi:10.1093/nar/gkf599 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Hiroyuki Tanaka, Gi-Hyuck Ryu, Yeon-Soo Seo, Koichi Tanaka, Hiroto Okayama, Stuart A. MacNeill, and Yasuhito Yuasa

The fission yeast pfh1⁺ gene encodes an essential 5' to 3' DNA helicase required for the completion of S-phase
Nucl. Acids Res. 2002 30: 4728-4739; doi:10.1093/nar/gkf590 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Pratip K. Bhattacharya, Julie Cha, and Jacqueline K. Barton

¹H NMR determination of base-pair lifetimes in oligonucleotides containing single base mismatches
Nucl. Acids Res. 2002 30: 4740-4750; doi:10.1093/nar/gkf601 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Kelly N. Nobles, Connie S. Yarian, Guihua Liu, Richard H. Guenther, and Paul F. Agris

Highly conserved modified nucleosides influence Mg²⁺-dependent tRNA folding
Nucl. Acids Res. 2002 30: 4751-4760; doi:10.1093/nar/gkf595 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Patricia Ayoubi, Xiaojing Jin, Saul Leite, Xianghui Liu, Jeson Martajaja, Abdurashid Abduraham, Qiaolan Wan, Wei Yan, Eduardo Misawa, and Rolf A. Prade

PipeOnline 2.0: automated EST processing and functional data sorting
Nucl. Acids Res. 2002 30: 4761-4769; doi:10.1093/nar/gkf585 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Shiro Koizume, Ken Tachibana, Takao Sekiya, Setsuo Hirohashi, and Masahiko Shiraishi

Heterogeneity in the modification and involvement of chromatin components of the CpG island of the silenced human CDH1 gene in cancer cells
Nucl. Acids Res. 2002 30: 4770-4780; doi:10.1093/nar/gkf593 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Mohamed Maftahi, Justin C. Hope, Lissette Delgado-Cruzata, Christine S. Han, and Greg A. Freyer

The severe slow growth of srs2 rqh1 in Schizosaccharomyces pombe is suppressed by loss of recombination and checkpoint genes
Nucl. Acids Res. 2002 30: 4781-4792; doi:10.1093/nar/gkf581 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Stefan Raddatz, Jochen Mueller-Ibeler, Joachim Kluge, Ludger Wäß, Gerhard Burdinski, John R. Havens, Tom J. Onofrey, Daguang Wang, and Markus Schweitzer

Hydrazide oligonucleotides: new chemical modification for chip array attachment and conjugation
Nucl. Acids Res. 2002 30: 4793-4802; doi:10.1093/nar/gkf594 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Sara Flodell, Jürgen Schleucher, Jenny Cromsigt, Hans Ippel, Karin Kidd-Ljunggren, and Sybren Wijmenga

The apical stem–loop of the hepatitis B virus encapsidation signal folds into a stable tri–loop with two underlying pyrimidine bulges
Nucl. Acids Res. 2002 30: 4803-4811; doi:10.1093/nar/gkf603 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

NAR Methods Online:

Barbara Mitta, Markus Rimann, Markus U. Ehrengruber, Martin Ehrbar, Valentin Djonov, Jens Kelm, and Martin Fussenegger

Advanced modular self-inactivating lentiviral expression vectors for multigene interventions in mammalian cells and in vivo transduction
Nucl. Acids Res. 2002 30: e113; doi:10.1093/nar/gnf112 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Paul J. O’Sullivan, Martina Burke, Aleksi E. Soini, and Dmitri B. Papkovsky

Synthesis and evaluation of phosphorescent oligonucleotide probes for hybridisation assays
Nucl. Acids Res. 2002 30: e114; doi:10.1093/nar/gnf113 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Matthias Lauth, Fabio Spreafico, Kathrin Dethleffsen, and Michael Meyer

Stable and efficient cassette exchange under non-selectable conditions by combined use of two site-specific recombinases
Nucl. Acids Res. 2002 30: e115; doi:10.1093/nar/gnf114 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ellen Sterrenburg, Rolf Turk, Judith M. Boer, Gertjan B. van Ommen, and Johan T. den Dunnen

A common reference for cDNA microarray hybridizations
Nucl. Acids Res. 2002 30: e116; doi:10.1093/nar/gnf115 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Annette Kaetzke and Klaus Eschrich

Simultaneous determination of different DNA sequences by mass spectrometric evaluation of Sanger sequencing reactions
Nucl. Acids Res. 2002 30: e117; doi:10.1093/nar/gnf116 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Mark L. Crowe, Debashis Rana, Fiona Fraser, Ian Bancroft, and Martin Trick

BACFinder: genomic localisation of large insert genomic clones based on restriction fingerprinting
Nucl. Acids Res. 2002 30: e118; doi:10.1093/nar/gnf117 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Todd A. Naumann, Igor Y. Goryshin, and William S. Reznikoff

Production of combinatorial libraries of fused genes by sequential transposition reactions
Nucl. Acids Res. 2002 30: e119; doi:10.1093/nar/gnf118 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Wei Wang and Jeffery G. Saven

Designing gene libraries from protein profiles for combinatorial protein experiments
Nucl. Acids Res. 2002 30: e120; doi:10.1093/nar/gnf119 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Haibo Zhang, Y. Ramanathan, Patricia Soteropoulos, Michael L. Recce, and Peter P. Tolias

EZ-Retrieve: a web-server for batch retrieval of coordinate-specified human DNA sequences and underscoring putative transcription factor-binding sites
Nucl. Acids Res. 2002 30: e121; doi:10.1093/nar/gnf120 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Salvatore A. E. Marras, Fred Russell Kramer, and Sanjay Tyagi

Efficiencies of fluorescence resonance energy transfer and contact-mediated quenching in oligonucleotide probes
Nucl. Acids Res. 2002 30: e122; doi:10.1093/nar/gnf121 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

R. Grigaite, Z. Maneliene, and A. Janulaitis

AarI, a restriction endonuclease from Arthrobacter aurescens SS2-322, which recognizes the novel non-palindromic sequence 5'-CACCTGC(N)_4/8-3'
Nucl. Acids Res. 2002 30: e123; doi:10.1093/nar/gnf122 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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