Nucleic Acids Research

Articles:

Zdravko J. Lorkovic and Andrea Barta

Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana
Nucl. Acids Res. 2002 30: 623-635; doi:10.1093/nar/30.3.623 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Vladimir Bondarenko, Ye Liu, Alexander Ninfa, and Vasily M. Studitsky

Action of prokaryotic enhancer over a distance does not require continued presence of promoter-bound ⁵⁴ subunit
Nucl. Acids Res. 2002 30: 636-642; doi:10.1093/nar/30.3.636 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Eun Mi Kim, Yeun Kyu Jang, and Sang Dai Park

Phosphorylation of Rph1, a damage-responsive repressor of PHR1 in Saccharomyces cerevisiae, is dependent upon Rad53 kinase
Nucl. Acids Res. 2002 30: 643-648; doi:10.1093/nar/30.3.643 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Cedric R. Clapier, Karl P. Nightingale, and Peter B. Becker

A critical epitope for substrate recognition by the nucleosome remodeling ATPase ISWI
Nucl. Acids Res. 2002 30: 649-655; doi:10.1093/nar/30.3.649 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

L. Olavarrieta, M. L. Martínez-Robles, J. M. Sogo, A. Stasiak, P. Hernández, D. B. Krimer, and J. B. Schvartzman

Supercoiling, knotting and replication fork reversal in partially replicated plasmids
Nucl. Acids Res. 2002 30: 656-666; doi:10.1093/nar/30.3.656 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Juren Huang and William S. Dynan

Reconstitution of the mammalian DNA double-strand break end-joining reaction reveals a requirement for an Mre11/Rad50/NBS1-containing fraction
Nucl. Acids Res. 2002 30: 667-674; doi:10.1093/nar/30.3.667 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Shyam Unniraman, Ranjana Prakash, and Valakunja Nagaraja

Conserved economics of transcription termination in eubacteria
Nucl. Acids Res. 2002 30: 675-684; doi:10.1093/nar/30.3.675 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Nikolai A. Pavlov, Dmitry I. Cherny, Igor V. Nazimov, Alexei I. Slesarev, and Vinod Subramaniam

Identification, cloning and characterization of a new DNA-binding protein from the hyperthermophilic methanogen Methanopyrus kandleri
Nucl. Acids Res. 2002 30: 685-694; doi:10.1093/nar/30.3.685 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Julia A. Chekanova, James A. Dutko, I. Saira Mian, and Dmitry A. Belostotsky

Arabidopsis thaliana exosome subunit AtRrp4p is a hydrolytic 3'5' exonuclease containing S1 and KH RNA-binding domains
Nucl. Acids Res. 2002 30: 695-700; doi:10.1093/nar/30.3.695 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Isabell Dahlke and Michael Thomm

A Pyrococcus homolog of the leucine-responsive regulatory protein, LrpA, inhibits transcription by abrogating RNA polymerase recruitment
Nucl. Acids Res. 2002 30: 701-710; doi:10.1093/nar/30.3.701 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Guido Plotz, Jochen Raedle, Angela Brieger, Jörg Trojan, and Stefan Zeuzem

hMutS forms an ATP-dependent complex with hMutL and hMutLß on DNA
Nucl. Acids Res. 2002 30: 711-718; doi:10.1093/nar/30.3.711 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Adrienne Adams, J. Mitchell Guss, William A. Denny, and Laurence P. G. Wakelin

Crystal structure of 9-amino-N-[2-(4-morpholinyl)ethyl]-4-acridinecarboxamide bound to d(CGTACG)₂: implications for structure–activity relationships of acridinecarboxamide topoisomerase poisons
Nucl. Acids Res. 2002 30: 719-725; doi:10.1093/nar/30.3.719 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Donald H. Williamson, Chris J. Janse, Peter W. Moore, Andrew P. Waters, and Peter R. Preiser

Topology and replication of a nuclear episomal plasmid in the rodent malaria Plasmodium berghei
Nucl. Acids Res. 2002 30: 726-731; doi:10.1093/nar/30.3.726 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Stacey Broomfield and Wei Xiao

Suppression of genetic defects within the RAD6 pathway by srs2 is specific for error-free post-replication repair but not for damage-induced mutagenesis
Nucl. Acids Res. 2002 30: 732-739; doi:10.1093/nar/30.3.732 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Rafael J. Yáñez and Andrew C. G. Porter

Differential effects of Rad52p overexpression on gene targeting and extrachromosomal homologous recombination in a human cell line
Nucl. Acids Res. 2002 30: 740-748; doi:10.1093/nar/30.3.740 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Tung-Chung Mou and Donald M. Gray

The high binding affinity of phosphorothioate-modified oligomers for Ff gene 5 protein is moderated by the addition of C-5 propyne or 2'-O-methyl modifications
Nucl. Acids Res. 2002 30: 749-758; doi:10.1093/nar/30.3.749 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Michael O’Connor

Imbalance of tRNA^Pro isoacceptors induces +1 frameshifting at near-cognate codons
Nucl. Acids Res. 2002 30: 759-765; doi:10.1093/nar/30.3.759 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yoichiro Tanaka, Tamaki Hori, Mitsuhiro Tagaya, Taiichi Sakamoto, Yasuyuki Kurihara, Masato Katahira, and Seiichi Uesugi

Imino proton NMR analysis of HDV ribozymes: nested double pseudoknot structure and Mg²⁺ ion-binding site close to the catalytic core in solution
Nucl. Acids Res. 2002 30: 766-774; doi:10.1093/nar/30.3.766 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Stefanie Krawczyk, Corinna Thurow, Ricarda Niggeweg, and Christiane Gatz

Analysis of the spacing between the two palindromes of activation sequence-1 with respect to binding to different TGA factors and transcriptional activation potential
Nucl. Acids Res. 2002 30: 775-781; doi:10.1093/nar/30.3.775 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Rebecca R. Selzer, Simon Nyaga, Jingsheng Tuo, Alfred May, Meltem Muftuoglu, Mette Christiansen, Elisabetta Citterio, Robert M. Brosh, Jr, and Vilhelm A. Bohr

Differential requirement for the ATPase domain of the Cockayne syndrome group B gene in the processing of UV-induced DNA damage and 8-oxoguanine lesions in human cells
Nucl. Acids Res. 2002 30: 782-793; doi:10.1093/nar/30.3.782 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Aditi Das, Chhabinath Mandal, Arindam Dasgupta, Tanushri Sengupta, and Hemanta K. Majumder

An insight into the active site of a type I DNA topoisomerase from the kinetoplastid protozoan Leishmania donovani
Nucl. Acids Res. 2002 30: 794-802; doi:10.1093/nar/30.3.794 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Thomas Bentin and Peter E. Nielsen

In vitro transcription of a torsionally constrained template
Nucl. Acids Res. 2002 30: 803-809; doi:10.1093/nar/30.3.803 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Brent L. Fogel, Lisa M. McNally, and Mark T. McNally

Efficient polyadenylation of Rous sarcoma virus RNA requires the negative regulator of splicing element
Nucl. Acids Res. 2002 30: 810-817; doi:10.1093/nar/30.3.810 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Te-hui Wu, Tamalette Loh, and M. G. Marinus

The function of Asp70, Glu77 and Lys79 in the Escherichia coli MutH protein
Nucl. Acids Res. 2002 30: 818-822; doi:10.1093/nar/30.3.818 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

David T. Kuninger, Tadahide Izumi, John Papaconstantinou, and Sankar Mitra

Human AP-endonuclease 1 and hnRNP-L interact with a nCaRE-like repressor element in the AP-endonuclease 1 promoter
Nucl. Acids Res. 2002 30: 823-829; doi:10.1093/nar/30.3.823 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Edna Boone and Gary B. Schuster

Long-range oxidative damage in duplex DNA: the effect of bulged G in a G–C tract and tandem G/A mispairs
Nucl. Acids Res. 2002 30: 830-837; doi:10.1093/nar/30.3.830 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Koichiro Higasa and Kenshi Hayashi

Ordered catenation of sequence-tagged sites and multiplexed SNP genotyping by sequencing
Nucl. Acids Res. 2002 30: e11; doi:10.1093/nar/30.3.e11 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Thibaut Roulon, Dominique Coulaud, Etienne Delain, Eric Le Cam, Claude Hélène, and Christophe Escudé

Padlock oligonucleotides as a tool for labeling superhelical DNA
Nucl. Acids Res. 2002 30: e12; doi:10.1093/nar/30.3.e12 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Dajun Deng, Guoren Deng, Michael F. Smith, Jing Zhou, Huijun Xin, Steven M. Powell, and Youyong Lu

Simultaneous detection of CpG methylation and single nucleotide polymorphism by denaturing high performance liquid chromatography
Nucl. Acids Res. 2002 30: e13; doi:10.1093/nar/30.3.e13 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Erik D. Larson, David Nickens, and James T. Drummond

Construction and characterization of mismatch-containing circular DNA molecules competent for assessment of nick-directed human mismatch repair in vitro
Nucl. Acids Res. 2002 30: e14; doi:10.1093/nar/30.3.e14 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Erratum:

ERRATUM
Nucl. Acids Res. 2002 30: 838; doi:10.1093/nar/30.3.838 [Extract] [FREE Full Text] [Print PDF] [Request Permissions]  

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