Nucleic Acids Research

Articles:

Vivek Anantharaman, Eugene V. Koonin, and L. Aravind

Comparative genomics and evolution of proteins involved in RNA metabolism
Nucl. Acids Res. 2002 30: 1427-1464; doi:10.1093/nar/30.7.1427 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ying Huang

Transcriptional silencing in Saccharomyces cerevisiae and Schizosaccharomyces pombe
Nucl. Acids Res. 2002 30: 1465-1482; doi:10.1093/nar/30.7.1465 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Verónica Truniger, José M. Lázaro, Francisco J. Esteban, Luis Blanco, and Margarita Salas

A positively charged residue of 29 DNA polymerase, highly conserved in DNA polymerases from families A and B, is involved in binding the incoming nucleotide
Nucl. Acids Res. 2002 30: 1483-1492; doi:10.1093/nar/30.7.1483 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Christian Melle and Heinz-Peter Nasheuer

Physical and functional interactions of the tumor suppressor protein p53 and DNA polymerase -primase
Nucl. Acids Res. 2002 30: 1493-1499; doi:10.1093/nar/30.7.1493 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

V. Rani Parvathy, Sukesh R. Bhaumik, Kandala V. R. Chary, Girjesh Govil, Keliang Liu, Frank B. Howard, and H. Todd Miles

NMR structure of a parallel-stranded DNA duplex at atomic resolution
Nucl. Acids Res. 2002 30: 1500-1511; doi:10.1093/nar/30.7.1500 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Philippe de Diesbach, Francisca N’Kuli, Catherine Berens, Etienne Sonveaux, Michel Monsigny, Annie-Claude Roche, and Pierre J. Courtoy

Receptor-mediated endocytosis of phosphodiester oligonucleotides in the HepG2 cell line: evidence for non-conventional intracellular trafficking
Nucl. Acids Res. 2002 30: 1512-1521; doi:10.1093/nar/30.7.1512 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kirby D. Johnson, Jason E. Norton, and Emery H. Bresnick

Requirements for utilization of CREB binding protein by hypersensitive site two of the ß-globin locus control region
Nucl. Acids Res. 2002 30: 1522-1530; doi:10.1093/nar/30.7.1522 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jacqueline Vitali, Jianzhong Ding, Jianzhong Jiang, Ying Zhang, Adrian R. Krainer, and Rui-Ming Xu

Correlated alternative side chain conformations in the RNA-recognition motif of heterogeneous nuclear ribonucleoprotein A1
Nucl. Acids Res. 2002 30: 1531-1538; doi:10.1093/nar/30.7.1531 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Angels Tapias, Silvia Fernández, Juan C. Alonso, and Jordi Barbé

Rhodobacter sphaeroides LexA has dual activity: optimising and repressing recA gene transcription
Nucl. Acids Res. 2002 30: 1539-1546; doi:10.1093/nar/30.7.1539 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Giedrius Vilkaitis, Arvydas Lubys, Egle Merkiene, Albertas Timinskas, Arvydas Janulaitis, and Saulius Klimasauskas

Circular permutation of DNA cytosine-N4 methyltransferases: in vivo coexistence in the BcnI system and in vitro probing by hybrid formation
Nucl. Acids Res. 2002 30: 1547-1557; doi:10.1093/nar/30.7.1547 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Zhi Li, Rongchao Jin, Chad A. Mirkin, and Robert L. Letsinger

Multiple thiol-anchor capped DNA–gold nanoparticle conjugates
Nucl. Acids Res. 2002 30: 1558-1562; doi:10.1093/nar/30.7.1558 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Jon D. Wright, Sergey Yu Noskov, and Carmay Lim

Factors governing loss and rescue of DNA binding upon single and double mutations in the p53 core domain
Nucl. Acids Res. 2002 30: 1563-1574; doi:10.1093/nar/30.7.1563 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

A. J. Enright, S. Van Dongen, and C. A. Ouzounis

An efficient algorithm for large-scale detection of protein families
Nucl. Acids Res. 2002 30: 1575-1584; doi:10.1093/nar/30.7.1575 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Seisuke Kimura, Yukinobu Uchiyama, Nobuyuki Kasai, Satoshi Namekawa, Ai Saotome, Tadamasa Ueda, Tsuyu Ando, Toyotaka Ishibashi, Masahiko Oshige, Tomoyuki Furukawa, Taichi Yamamoto, Junji Hashimoto, and Kengo Sakaguchi

A novel DNA polymerase homologous to Escherichia coli DNA polymerase I from a higher plant, rice (Oryza sativa L.)
Nucl. Acids Res. 2002 30: 1585-1592; doi:10.1093/nar/30.7.1585 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Data] [Request Permissions]  

Patrice Polard, Stéphanie Marsin, Stephen McGovern, Marion Velten, Dale B. Wigley, S. Dusko Ehrlich, and Claude Bruand

Restart of DNA replication in Gram-positive bacteria: functional characterisation of the Bacillus subtilis PriA initiator
Nucl. Acids Res. 2002 30: 1593-1605; doi:10.1093/nar/30.7.1593 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Alejandro Vazquez-Tello, Pablo Castán, Renata Moreno, James M. Smith, José Berenguer, and Robert Cedergren

Efficient trans-cleavage by the Schistosoma mansoni SM1 hammerhead ribozyme in the extreme thermophile Thermus thermophilus
Nucl. Acids Res. 2002 30: 1606-1612; doi:10.1093/nar/30.7.1606 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Dong Yu, Ekambar R. Kandimalla, Qiuyan Zhao, Yanping Cong, and Sudhir Agrawal

Immunostimulatory properties of phosphorothioate CpG DNA containing both 3'–5'- and 2'–5'-internucleotide linkages
Nucl. Acids Res. 2002 30: 1613-1619; doi:10.1093/nar/30.7.1613 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kyoko Hanawa-Suetsugu, Mitsuru Takagi, Hachiro Inokuchi, Hyouta Himeno, and Akira Muto

SmpB functions in various steps of trans-translation
Nucl. Acids Res. 2002 30: 1620-1629; doi:10.1093/nar/30.7.1620 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yanbin Zhang, Xiaohua Wu, Olga Rechkoblit, Nicholas E. Geacintov, John-Stephen Taylor, and Zhigang Wang

Response of human REV1 to different DNA damage: preferential dCMP insertion opposite the lesion
Nucl. Acids Res. 2002 30: 1630-1638; doi:10.1093/nar/30.7.1630 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jenny Cromsigt, Jürgen Schleucher, Tomas Gustafsson, Jan Kihlberg, and Sybren Wijmenga

Preparation of partially ²H/¹³C-labelled RNA for NMR studies. Stereo-specific deuteration of the H5'' in nucleotides
Nucl. Acids Res. 2002 30: 1639-1645; doi:10.1093/nar/30.7.1639 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Frank J. Grundy, Tessa R. Moir, Margaret T. Haldeman, and Tina M. Henkin

Sequence requirements for terminators and antiterminators in the T box transcription antitermination system: disparity between conservation and functional requirements
Nucl. Acids Res. 2002 30: 1646-1655; doi:10.1093/nar/30.7.1646 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yuri Voziyanov, A. Francis Stewart, and Makkuni Jayaram

A dual reporter screening system identifies the amino acid at position 82 in Flp site-specific recombinase as a determinant for target specificity
Nucl. Acids Res. 2002 30: 1656-1663; doi:10.1093/nar/30.7.1656 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yuan Zhou, Yick-Pang Ching, Kin Hang Kok, Hsiang-fu Kung, and Dong-Yan Jin

Post-transcriptional suppression of gene expression in Xenopus embryos by small interfering RNA
Nucl. Acids Res. 2002 30: 1664-1669; doi:10.1093/nar/30.7.1664 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Wen-Yen Ku, Yu-Wen Liu, Ya-Chein Hsu, Chen-Chung Liao, Po-Huang Liang, Hanna S. Yuan, and Kin-Fu Chak

The zinc ion in the HNH motif of the endonuclease domain of colicin E7 is not required for DNA binding but is essential for DNA hydrolysis
Nucl. Acids Res. 2002 30: 1670-1678; doi:10.1093/nar/30.7.1670 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jürgen Beck, Maren Vogel, and Michael Nassal

dNTP versus NTP discrimination by phenylalanine 451 in duck hepatitis B virus P protein indicates a common structure of the dNTP-binding pocket with other reverse transcriptases
Nucl. Acids Res. 2002 30: 1679-1687; doi:10.1093/nar/30.7.1679 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Alexandra Boutla, Kriton Kalantidis, Nektarios Tavernarakis, Mina Tsagris, and Martin Tabler

Induction of RNA interference in Caenorhabditis elegans by RNAs derived from plants exhibiting post-transcriptional gene silencing
Nucl. Acids Res. 2002 30: 1688-1694; doi:10.1093/nar/30.7.1688 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Hanno Scheffczik, Christos G. W. Savva, Andreas Holzenburg, Larissa Kolesnikova, and Elke Bogner

The terminase subunits pUL56 and pUL89 of human cytomegalovirus are DNA-metabolizing proteins with toroidal structure
Nucl. Acids Res. 2002 30: 1695-1703; doi:10.1093/nar/30.7.1695 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Leonid A. Mirny and Mikhail S. Gelfand

Structural analysis of conserved base pairs in protein–DNA complexes
Nucl. Acids Res. 2002 30: 1704-1711; doi:10.1093/nar/30.7.1704 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Jordi Frigola, Maria Ribas, Rosa-Ana Risques, and Miguel A. Peinado

Methylome profiling of cancer cells by amplification of inter-methylated sites (AIMS)
Nucl. Acids Res. 2002 30: e28; doi:10.1093/nar/30.7.e28 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Mathias Gruen, Kathy Chang, Irina Serbanescu, and David R. Liu

An in vivo selection system for homing endonuclease activity
Nucl. Acids Res. 2002 30: e29; doi:10.1093/nar/30.7.e29 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ramesh Ramakrishnan, David Dorris, Anna Lublinsky, Allen Nguyen, Marc Domanus, Anna Prokhorova, Linn Gieser, Edward Touma, Randall Lockner, Murthy Tata, Xiaomei Zhu, Marcus Patterson, Richard Shippy, Timothy J. Sendera, and Abhijit Mazumder

An assessment of Motorola CodeLink^TM microarray performance for gene expression profiling applications
Nucl. Acids Res. 2002 30: e30; doi:10.1093/nar/30.7.e30 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Nader Pourmand, Elahe Elahi, Ronald W. Davis, and Mostafa Ronaghi

Multiplex Pyrosequencing
Nucl. Acids Res. 2002 30: e31; doi:10.1093/nar/30.7.e31 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Debra A. Dederich, Geoffrey Okwuonu, Toni Garner, Amanda Denn, Angelica Sutton, Michael Escotto, Ashley Martindale, Oliver Delgado, Donna M. Muzny, Richard A. Gibbs, and Michael L. Metzker

Glass bead purification of plasmid template DNA for high throughput sequencing of mammalian genomes
Nucl. Acids Res. 2002 30: e32; doi:10.1093/nar/30.7.e32 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Agnieszka Zylicz-Stachula, Renata I. Harasimowicz-Slowinska, Ireneusz Sobolewski, and Piotr M. Skowron

TspGWI, a thermophilic class-IIS restriction endonuclease from Thermus sp., recognizes novel asymmetric sequence 5'-ACGGA(N_11/9)-3'
Nucl. Acids Res. 2002 30: e33; doi:10.1093/nar/30.7.e33 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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