Nucleic Acids Research

Articles:

Shan-Ho Chou, Ko-Hsin Chin, and Andrew H.-J. Wang

Unusual DNA duplex and hairpin motifs
Nucl. Acids Res. 2003 31: 2461-2474; doi:10.1093/nar/gkg367 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Daniel Schaft, Assen Roguev, Kimberly M. Kotovic, Anna Shevchenko, Mihail Sarov, Andrej Shevchenko, Karla M. Neugebauer, and A. Francis Stewart

The histone 3 lysine 36 methyltransferase, SET2, is involved in transcriptional elongation
Nucl. Acids Res. 2003 31: 2475-2482; doi:10.1093/nar/gkg372 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Quinn Lu, John M. Teare, Howard Granok, Marci J. Swede, Jenny Xu, and Sarah C. R. Elgin

The capacity to form H-DNA cannot substitute for GAGA factor binding to a (CT)_n·(GA)_n regulatory site
Nucl. Acids Res. 2003 31: 2483-2494; doi:10.1093/nar/gkg369 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Guozhong Yuan, Christian Klämbt, Jean-Pierre Bachellerie, Jürgen Brosius, and Alexander Hüttenhofer

RNomics in Drosophila melanogaster: identification of 66 candidates for novel non-messenger RNAs
Nucl. Acids Res. 2003 31: 2495-2507; doi:10.1093/nar/gkg361 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Davide De Pietri Tonelli, Marija Mihailovich, Raphaela Schnurbus, Graziano Pesole, Fabio Grohovaz, and Daniele Zacchetti

Translational control of Scamper expression via a cell-specific internal ribosome entry site
Nucl. Acids Res. 2003 31: 2508-2513; doi:10.1093/nar/gkg357 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Takanori Ito, Yoshihito Ueno, Yasuo Komatsu, and Akira Matsuda

Synthesis, thermal stability and resistance to enzymatic hydrolysis of the oligonucleotides containing 5-(N-aminohexyl)carbamoyl-2'-O-methyluridines
Nucl. Acids Res. 2003 31: 2514-2523; doi:10.1093/nar/gkg374 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Saengchan Senapin, G. Desmond Clark-Walker, Xin Jie Chen, Bertrand Séraphin, and Marie-Claire Daugeron

RRP20, a component of the 90S preribosome, is required for pre-18S rRNA processing in Saccharomyces cerevisiae
Nucl. Acids Res. 2003 31: 2524-2533; doi:10.1093/nar/gkg366 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sheng-Jian Ji, Ying-Chun Lu, Jian-Xun Feng, Gang Wei, Jun Li, Yong-Hui Shi, Qiang Fu, Di Liu, Jing-Chu Luo, and Yu-Xian Zhu

Isolation and analyses of genes preferentially expressed during early cotton fiber development by subtractive PCR and cDNA array
Nucl. Acids Res. 2003 31: 2534-2543; doi:10.1093/nar/gkg358 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

T. A. Thanaraj, Francis Clark, and Juha Muilu

Conservation of human alternative splice events in mouse
Nucl. Acids Res. 2003 31: 2544-2552; doi:10.1093/nar/gkg355 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kwang-Zin Lee, Andreas Eizinger, Ramkumar Nandakumar, Stephan C. Schuster, and Ralf J. Sommer

Limited microsynteny between the genomes of Pristionchus pacificus and Caenorhabditis elegans
Nucl. Acids Res. 2003 31: 2553-2560; doi:10.1093/nar/gkg359 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kristine M. Sovenyhazy, Jason A. Bordelon, and Jeffrey T. Petty

Spectroscopic studies of the multiple binding modes of a trimethine-bridged cyanine dye with DNA
Nucl. Acids Res. 2003 31: 2561-2569; doi:10.1093/nar/gkg363 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Kazuya Satou, Hideyoshi Harashima, and Hiroyuki Kamiya

Mutagenic effects of 2-hydroxy-dATP on replication in a HeLa extract: induction of substitution and deletion mutations
Nucl. Acids Res. 2003 31: 2570-2575; doi:10.1093/nar/gkg368 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Zheng Dong and Michael Fasullo

Multiple recombination pathways for sister chromatid exchange in Saccharomyces cerevisiae: role of RAD1 and the RAD52 epistasis group genes
Nucl. Acids Res. 2003 31: 2576-2585; doi:10.1093/nar/gkg352 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Anne-Laure Chateigner-Boutin and Maureen R. Hanson

Developmental co-variation of RNA editing extent of plastid editing sites exhibiting similar cis-elements
Nucl. Acids Res. 2003 31: 2586-2594; doi:10.1093/nar/gkg354 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Emily J. Borda, John C. Markley, and Snorri Th. Sigurdsson

Zinc-dependent cleavage in the catalytic core of the hammerhead ribozyme: evidence for a pH-dependent conformational change
Nucl. Acids Res. 2003 31: 2595-2600; doi:10.1093/nar/gkg349 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Chun-Long Chen, Dan Liang, Hui Zhou, Min Zhuo, Yue-Qin Chen, and Liang-Hu Qu

The high diversity of snoRNAs in plants: identification and comparative study of 120 snoRNA genes from Oryza sativa
Nucl. Acids Res. 2003 31: 2601-2613; doi:10.1093/nar/gkg373 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Thomas Leeper, Nicolas Leulliot, and Gabriele Varani

The solution structure of an essential stem–loop of human telomerase RNA
Nucl. Acids Res. 2003 31: 2614-2621; doi:10.1093/nar/gkg351 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ko-Hsin Chin, Fu-Ming Chen, and Shan-Ho Chou

Solution structure of the ActD–5'-CCGTT₃GTGG-3' complex: drug interaction with tandem G·T mismatches and hairpin loop backbone
Nucl. Acids Res. 2003 31: 2622-2629; doi:10.1093/nar/gkg353 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Gerald Giller, Taurai Tasara, Bernhard Angerer, Klaus Mühlegger, Mario Amacker, and Holger Winter

Incorporation of reporter molecule-labeled nucleotides by DNA polymerases. I. Chemical synthesis of various reporter group-labeled 2'-deoxyribonucleoside-5'-triphosphates
Nucl. Acids Res. 2003 31: 2630-2635; doi:10.1093/nar/gkg370 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Taurai Tasara, Bernhard Angerer, Martine Damond, Holger Winter, Sabine Dörhöfer, Ulrich Hübscher, and Mario Amacker

Incorporation of reporter molecule-labeled nucleotides by DNA polymerases. II. High-density labeling of natural DNA
Nucl. Acids Res. 2003 31: 2636-2646; doi:10.1093/nar/gkg371 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Aditi Kanhere and Manju Bansal

An assessment of three dinucleotide parameters to predict DNA curvature by quantitative comparison with experimental data
Nucl. Acids Res. 2003 31: 2647-2658; doi:10.1093/nar/gkg362 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Olga Igoucheva, Vitali Alexeev, Melissa Pryce, and Kyonggeun Yoon

Transcription affects formation and processing of intermediates in oligonucleotide-mediated gene alteration
Nucl. Acids Res. 2003 31: 2659-2670; doi:10.1093/nar/gkg360 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Eric Ennifar, Philippe Walter, and Philippe Dumas

A crystallographic study of the binding of 13 metal ions to two related RNA duplexes
Nucl. Acids Res. 2003 31: 2671-2682; doi:10.1093/nar/gkg350 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Jeffrey I. Gyi, Daquan Gao, Graeme L. Conn, John O. Trent, Tom Brown, and Andrew N. Lane

The solution structure of a DNA·RNA duplex containing 5-propynyl U and C; comparison with 5-Me modifications
Nucl. Acids Res. 2003 31: 2683-2693; doi:10.1093/nar/gkg356 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Julien Bischerour, Patrick Tauc, Hervé Leh, Hugues de Rocquigny, Bernard Roques, and Jean-François Mouscadet

The (52–96) C-terminal domain of Vpr stimulates HIV-1 IN-mediated homologous strand transfer of mini-viral DNA
Nucl. Acids Res. 2003 31: 2694-2702; doi:10.1093/nar/gkg364 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Xianbin Yang, Xin Li, Tarl W. Prow, Lisa M. Reece, Suzanne E. Bassett, Bruce A. Luxon, Norbert K. Herzog, Judy Aronson, Robert E. Shope, James F. Leary, and David G. Gorenstein

Immunofluorescence assay and flow-cytometry selection of bead-bound aptamers
Nucl. Acids Res. 2003 31: e54; doi:10.1093/nar/gng054 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Bart Brugmans, Ron G. M. van der Hulst, Richard G. F. Visser, Pim Lindhout, and Herman J. van Eck

A new and versatile method for the successful conversion of AFLP^TM markers into simple single locus markers
Nucl. Acids Res. 2003 31: e55; doi:10.1093/nar/gng055 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jochen Wilhelm, Alfred Pingoud, and Meinhard Hahn

Real-time PCR-based method for the estimation of genome sizes
Nucl. Acids Res. 2003 31: e56; doi:10.1093/nar/gng056 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

John R. Scheel, Lisa J. Garrett, Duane M. Allen, Todd A. Carter, Lynne Randolph-Moore, Micheal J. Gambello, Fred H. Gage, Anthony Wynshaw-Boris, and Carrolee Barlow

An inbred 129SvEv GFPCre transgenic mouse that deletes loxP-flanked genes in all tissues
Nucl. Acids Res. 2003 31: e57; doi:10.1093/nar/gng057 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Errata:

ERRATUM
Nucl. Acids Res. 2003 31: e58; doi:10.1093/nar/gng064 [Extract] [FREE Full Text] [Print PDF] [Request Permissions]  

ERRATUM
Nucl. Acids Res. 2003 31: 2703; doi:10.1093/nar/gkg394 [Extract] [FREE Full Text] [Print PDF] [Request Permissions]  

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