Nucleic Acids Research

Articles:

Frank Czauderna, Melanie Fechtner, Sibylle Dames, Hüseyin Aygün, Anke Klippel, Gijsbertus J. Pronk, Klaus Giese, and Jörg Kaufmann

Structural variations and stabilising modifications of synthetic siRNAs in mammalian cells
Nucl. Acids Res. 2003 31: 2705-2716; doi:10.1093/nar/gkg393 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Federica Simeoni, May C. Morris, Frederic Heitz, and Gilles Divita

Insight into the mechanism of the peptide-based gene delivery system MPG: implications for delivery of siRNA into mammalian cells
Nucl. Acids Res. 2003 31: 2717-2724; doi:10.1093/nar/gkg385 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Su Jeong Kim and Byeang Hyean Kim

Syntheses and structural studies of calix[4]arene–nucleoside and calix[4]arene–oligonucleotide hybrids
Nucl. Acids Res. 2003 31: 2725-2734; doi:10.1093/nar/gkg391 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Claire A. P. Bristow and Paul Shore

Transcriptional regulation of the human MIP-1 promoter by RUNX1 and MOZ
Nucl. Acids Res. 2003 31: 2735-2744; doi:10.1093/nar/gkg401 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Mike S. Fenton and Jay D. Gralla

Effect of DNA bases and backbone on 70 holoenzyme binding and isomerization using fork junction probes
Nucl. Acids Res. 2003 31: 2745-2750; doi:10.1093/nar/gkg400 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Fakhri Saïda, Marc Uzan, and François Bontems

The phage T4 restriction endoribonuclease RegB: a cyclizing enzyme that requires two histidines to be fully active
Nucl. Acids Res. 2003 31: 2751-2758; doi:10.1093/nar/gkg377 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Stephen C. Holmes, Andrey A. Arzumanov, and Michael J. Gait

Steric inhibition of human immunodeficiency virus type-1 Tat-dependent trans-activation in vitro and in cells by oligonucleotides containing 2'-O-methyl G-clamp ribonucleoside analogues
Nucl. Acids Res. 2003 31: 2759-2768; doi:10.1093/nar/gkg384 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

M^a Francisca Sánchez-Font, Anna Bosch-Comas, Roser Gonzàlez-Duarte, and Gemma Marfany

Overexpression of FABP7 in Down syndrome fetal brains is associated with PKNOX1 gene-dosage imbalance
Nucl. Acids Res. 2003 31: 2769-2777; doi:10.1093/nar/gkg396 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Douglas A. Bernstein and James L. Keck

Domain mapping of Escherichia coli RecQ defines the roles of conserved N- and C-terminal regions in the RecQ family
Nucl. Acids Res. 2003 31: 2778-2785; doi:10.1093/nar/gkg376 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Patrick J. Rochette, Jean-Philippe Therrien, Régen Drouin, Daniel Perdiz, Nathalie Bastien, Elliot A. Drobetsky, and Evelyne Sage

UVA-induced cyclobutane pyrimidine dimers form predominantly at thymine–thymine dipyrimidines and correlate with the mutation spectrum in rodent cells
Nucl. Acids Res. 2003 31: 2786-2794; doi:10.1093/nar/gkg402 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Colin G. Miles, Lesley Rankin, Shirley I. Smith, Martina Niksic, Greg Elgar, and Nicholas D. Hastie

Faithful expression of a tagged Fugu WT1 protein from a genomic transgene in zebrafish: efficient splicing of pufferfish genes in zebrafish but not mice
Nucl. Acids Res. 2003 31: 2795-2802; doi:10.1093/nar/gkg383 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Phil Marks, John McGeehan, Geoff Wilson, Neil Errington, and Geoff Kneale

Purification and characterisation of a novel DNA methyltransferase, M.AhdI
Nucl. Acids Res. 2003 31: 2803-2810; doi:10.1093/nar/gkg399 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Susan Jones, Jonathan A. Barker, Irene Nobeli, and Janet M. Thornton

Using structural motif templates to identify proteins with DNA binding function
Nucl. Acids Res. 2003 31: 2811-2823; doi:10.1093/nar/gkg386 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Chin-Ju Park, Sung-Hun Bae, Mi-Kyung Lee, Gabriele Varani, and Byong-Seok Choi

Solution structure of the influenza A virus cRNA promoter: implications for differential recognition of viral promoter structures by RNA-dependent RNA polymerase
Nucl. Acids Res. 2003 31: 2824-2832; doi:10.1093/nar/gkg387 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Chern-Sing Goh, Ning Lan, Nathaniel Echols, Shawn M. Douglas, Duncan Milburn, Paul Bertone, Rong Xiao, Li-Chung Ma, Deyou Zheng, Zeba Wunderlich, Tom Acton, Gaetano T. Montelione, and Mark Gerstein

SPINE 2: a system for collaborative structural proteomics within a federated database framework
Nucl. Acids Res. 2003 31: 2833-2838; doi:10.1093/nar/gkg397 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Horst Wolff, Ruth Brack-Werner, Markus Neumann, Thomas Werner, and Ralf Schneider

Integrated functional and bioinformatics approach for the identification and experimental verification of RNA signals: application to HIV-1 INS
Nucl. Acids Res. 2003 31: 2839-2851; doi:10.1093/nar/gkg390 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Janet Klass, Frank V. Murphy IV, Susan Fouts, Melissa Serenil, Anita Changela, Jessica Siple, and Mair E. A. Churchill

The role of intercalating residues in chromosomal high-mobility-group protein DNA binding, bending and specificity
Nucl. Acids Res. 2003 31: 2852-2864; doi:10.1093/nar/gkg389 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Xing Du and En-Duo Wang

Tertiary structure base pairs between D- and TC-loops of Escherichia coli tRNA^Leu play important roles in both aminoacylation and editing
Nucl. Acids Res. 2003 31: 2865-2872; doi:10.1093/nar/gkg382 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Juliette Salvaing, Aurore Lopez, Antoine Boivin, Jean S. Deutsch, and Frédérique Peronnet

The Drosophila Corto protein interacts with Polycomb-group proteins and the GAGA factor
Nucl. Acids Res. 2003 31: 2873-2882; doi:10.1093/nar/gkg381 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Murray J. Cairns, Andrew King, and Lun-Quan Sun

Optimisation of the 10–23 DNAzyme–substrate pairing interactions enhanced RNA cleavage activity at purine–cytosine target sites
Nucl. Acids Res. 2003 31: 2883-2889; doi:10.1093/nar/gkg378 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jörg Vogel, Ilka M. Axmann, Hanspeter Herzel, and Wolfgang R. Hess

Experimental and computational analysis of transcriptional start sites in the cyanobacterium Prochlorococcus MED4
Nucl. Acids Res. 2003 31: 2890-2899; doi:10.1093/nar/gkg398 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Xueping Zhang, Iman H. Diab, and Zendra E. Zehner

ZBP-89 represses vimentin gene transcription by interacting with the transcriptional activator, Sp1
Nucl. Acids Res. 2003 31: 2900-2914; doi:10.1093/nar/gkg380 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Edward M. Johnson, Yayoi Kinoshita, and Dianne C. Daniel

A new member of the MCM protein family encoded by the human MCM8 gene, located contrapodal to GCD10 at chromosome band 20p12.3–13
Nucl. Acids Res. 2003 31: 2915-2925; doi:10.1093/nar/gkg395 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Hin Hark Gan, Samuela Pasquali, and Tamar Schlick

Exploring the repertoire of RNA secondary motifs using graph theory; implications for RNA design
Nucl. Acids Res. 2003 31: 2926-2943; doi:10.1093/nar/gkg365 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Melanie J. Cocco, L. A. Hanakahi, Michael D. Huber, and Nancy Maizels

Specific interactions of distamycin with G-quadruplex DNA
Nucl. Acids Res. 2003 31: 2944-2951; doi:10.1093/nar/gkg392 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Jean-Charles Epinat, Sylvain Arnould, Patrick Chames, Pascal Rochaix, Dominique Desfontaines, Clémence Puzin, Amélie Patin, Alexandre Zanghellini, Frédéric Pâques, and Emmanuel Lacroix

A novel engineered meganuclease induces homologous recombination in yeast and mammalian cells
Nucl. Acids Res. 2003 31: 2952-2962; doi:10.1093/nar/gkg375 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Anantharaman Kalyanaraman, Srinivas Aluru, Suresh Kothari, and Volker Brendel

Efficient clustering of large EST data sets on parallel computers
Nucl. Acids Res. 2003 31: 2963-2974; doi:10.1093/nar/gkg379 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

R. Arjen Kramer, Freek Cox, Marieke van der Horst, Sonja van den Oudenrijn, Pieter C. M. Res, Judith Bia, Ton Logtenberg, and John de Kruif

A novel helper phage that improves phage display selection efficiency by preventing the amplification of phages without recombinant protein
Nucl. Acids Res. 2003 31: e59; doi:10.1093/nar/gng058 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Martin J. Hessner, Xujing Wang, Shehnaz Khan, Lisa Meyer, Michael Schlicht, Jennifer Tackes, Milton W. Datta, Howard J. Jacob, and Soumitra Ghosh

Use of a three-color cDNA microarray platform to measure and control support-bound probe for improved data quality and reproducibility
Nucl. Acids Res. 2003 31: e60; doi:10.1093/nar/gng059 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Francis J. Miller, Franklin L. Rosenfeldt, Chunfang Zhang, Anthony W. Linnane, and Phillip Nagley

Precise determination of mitochondrial DNA copy number in human skeletal and cardiac muscle by a PCR-based assay: lack of change of copy number with age
Nucl. Acids Res. 2003 31: e61; doi:10.1093/nar/gng060 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Knut Rudi, Ida Rud, and Askild Holck

A novel multiplex quantitative DNA array based PCR (MQDA-PCR) for quantification of transgenic maize in food and feed
Nucl. Acids Res. 2003 31: e62; doi:10.1093/nar/gng061 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sascha Sauer, Hans Lehrach, and Richard Reinhardt

MALDI mass spectrometry analysis of single nucleotide polymorphisms by photocleavage and charge-tagging
Nucl. Acids Res. 2003 31: e63; doi:10.1093/nar/gng062 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ralph H. Kehlenbach

In vitro analysis of nuclear mRNA export using molecular beacons for target detection
Nucl. Acids Res. 2003 31: e64; doi:10.1093/nar/gng063 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Cassandra Rock, Parviz Ayazi Shamlou, and M. Susana Levy

An automated microplate-based method for monitoring DNA strand breaks in plasmids and bacterial artificial chromosomes
Nucl. Acids Res. 2003 31: e65; doi:10.1093/nar/gng065 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kakuturu V. N. Rao, Priscilla Wilkins Stevens, Jeff G. Hall, Victor Lyamichev, Bruce P. Neri, and David M. Kelso

Genotyping single nucleotide polymorphisms directly from genomic DNA by invasive cleavage reaction on microspheres
Nucl. Acids Res. 2003 31: e66; doi:10.1093/nar/gng066 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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