Nucleic Acids Research

Articles:

Eveline Lescrinier, Matheus Froeyen, and Piet Herdewijn

Difference in conformational diversity between nucleic acids with a six-membered ‘sugar’ unit and natural ‘furanose’ nucleic acids
Nucl. Acids Res. 2003 31: 2975-2989; doi:10.1093/nar/gkg407 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Anjum Sohail, Joanna Klapacz, Mala Samaranayake, Asad Ullah, and Ashok S. Bhagwat

Human activation-induced cytidine deaminase causes transcription-dependent, strand-biased C to U deaminations
Nucl. Acids Res. 2003 31: 2990-2994; doi:10.1093/nar/gkg464 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Breanne Shirkey, Nicole J. McMaster, Sue C. Smith, Deborah J. Wright, Henry Rodriguez, Pawel Jaruga, Mustafa Birincioglu, Richard F. Helm, and Malcolm Potts

Genomic DNA of Nostoc commune (Cyanobacteria) becomes covalently modified during long-term (decades) desiccation but is protected from oxidative damage and degradation
Nucl. Acids Res. 2003 31: 2995-3005; doi:10.1093/nar/gkg404 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kwang-Hee Bae, Hee-Sook Kim, Sung-Ho Bae, Ho-Young Kang, Steven Brill, and Yeon-Soo Seo

Bimodal interaction between replication-protein A and Dna2 is critical for Dna2 function both in vivo and in vitro
Nucl. Acids Res. 2003 31: 3006-3015; doi:10.1093/nar/gkg422 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kay S. Childs and Stephen Goodbourn

Identification of novel co-repressor molecules for Interferon Regulatory Factor-2
Nucl. Acids Res. 2003 31: 3016-3026; doi:10.1093/nar/gkg431 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Werner G. Purschke, Falko Radtke, Frank Kleinjung, and Sven Klussmann

A DNA Spiegelmer to staphylococcal enterotoxin B
Nucl. Acids Res. 2003 31: 3027-3032; doi:10.1093/nar/gkg413 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Mitsuhiro Shimizu, Keiko Takahashi, Teresa M. Lamb, Heisaburo Shindo, and Aaron P. Mitchell

Yeast Ume6p repressor permits activator binding but restricts TBP binding at the HOP1 promoter
Nucl. Acids Res. 2003 31: 3033-3037; doi:10.1093/nar/gkg425 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Lina Li and A-Lien Lu

The C-terminal domain of Escherichia coli MutY is involved in DNA binding and glycosylase activities
Nucl. Acids Res. 2003 31: 3038-3049; doi:10.1093/nar/gkg434 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Christel Krueger, Christian Berens, Andreas Schmidt, Dirk Schnappinger, and Wolfgang Hillen

Single-chain Tet transregulators
Nucl. Acids Res. 2003 31: 3050-3056; doi:10.1093/nar/gkg421 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jean-Marie Rouillard, Michael Zuker, and Erdogan Gulari

OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach
Nucl. Acids Res. 2003 31: 3057-3062; doi:10.1093/nar/gkg426 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Mónica Campillos, José Ramón Lamas, Miguel Angel García, María Jesús Bullido, Fernando Valdivieso, and Jesús Vázquez

Specific interaction of heterogeneous nuclear ribonucleoprotein A1 with the –219T allelic form modulates APOE promoter activity
Nucl. Acids Res. 2003 31: 3063-3070; doi:10.1093/nar/gkg435 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Markus Landthaler and David A. Shub

The nicking homing endonuclease I-BasI is encoded by a group I intron in the DNA polymerase gene of the Bacillus thuringiensis phage Bastille
Nucl. Acids Res. 2003 31: 3071-3077; doi:10.1093/nar/gkg433 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Stephen S. -T. Yau, Jiasong Wang, Amir Niknejad, Chaoxiao Lu, Ning Jin, and Yee-Kin Ho

DNA sequence representation without degeneracy
Nucl. Acids Res. 2003 31: 3078-3080; doi:10.1093/nar/gkg432 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

R. B. Langkjær, S. Casaregola, D. W. Ussery, C. Gaillardin, and J. Piskur

Sequence analysis of three mitochondrial DNA molecules reveals interesting differences among Saccharomyces yeasts
Nucl. Acids Res. 2003 31: 3081-3091; doi:10.1093/nar/gkg423 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Theodoros N. Rampias, Diamantis C. Sideris, and Emmanuel G. Fragoulis

Cc RNase: the Ceratitis capitata ortholog of a novel highly conserved protein family in metazoans
Nucl. Acids Res. 2003 31: 3092-3100; doi:10.1093/nar/gkg414 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Hiromichi Kimura, Takahisa Nakamura, Tomoya Ogawa, Satoshi Tanaka, and Kunio Shiota

Transcription of mouse DNA methyltransferase 1 (Dnmt1) is regulated by both E2F-Rb-HDAC-dependent and -independent pathways
Nucl. Acids Res. 2003 31: 3101-3113; doi:10.1093/nar/gkg406 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ester Valls, Xavier de la Cruz, and Marian A. Martínez-Balbás

The SV40 T antigen modulates CBP histone acetyltransferase activity
Nucl. Acids Res. 2003 31: 3114-3122; doi:10.1093/nar/gkg418 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Mark Ferguson, Patricia A. Henry, and R. Alexander Currie

Histone deacetylase inhibition is associated with transcriptional repression of the Hmga2 gene
Nucl. Acids Res. 2003 31: 3123-3133; doi:10.1093/nar/gkg403 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Thierry Douki, Grégory Laporte, and Jean Cadet

Inter-strand photoproducts are produced in high yield within A-DNA exposed to UVC radiation
Nucl. Acids Res. 2003 31: 3134-3142; doi:10.1093/nar/gkg408 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jie Feng, Qiang Li, Hai-Liang Hu, Xiao-Chun Chen, and Guo-Fan Hong

Inactivation of the nod box distal half-site allows tetrameric NodD to activate nodA transcription in an inducer-independent manner
Nucl. Acids Res. 2003 31: 3143-3156; doi:10.1093/nar/gkg411 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

B. Kebaara, T. Nazarenus, R. Taylor, A. Forch, and A. L. Atkin

The Upf-dependent decay of wild-type PPR1 mRNA depends on its 5'-UTR and first 92 ORF nucleotides
Nucl. Acids Res. 2003 31: 3157-3165; doi:10.1093/nar/gkg430 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Signe Eskildsen, Just Justesen, Mikkel Heide Schierup, and Rune Hartmann

Characterization of the 2'–5'-oligoadenylate synthetase ubiquitin-like family
Nucl. Acids Res. 2003 31: 3166-3173; doi:10.1093/nar/gkg427 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Hedda A. Meijer and Adri A. M. Thomas

Ribosomes stalling on uORF1 in the Xenopus Cx41 5' UTR inhibit downstream translation initiation
Nucl. Acids Res. 2003 31: 3174-3184; doi:10.1093/nar/gkg429 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Arnold Grünweller, Eliza Wyszko, Birgit Bieber, Ricarda Jahnel, Volker A. Erdmann, and Jens Kurreck

Comparison of different antisense strategies in mammalian cells using locked nucleic acids, 2'-O-methyl RNA, phosphorothioates and small interfering RNA
Nucl. Acids Res. 2003 31: 3185-3193; doi:10.1093/nar/gkg409 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Scott S. Auerbach, Richard Ramsden, Matthew A. Stoner, Christophe Verlinde, Christopher Hassett, and Curtis J. Omiecinski

Alternatively spliced isoforms of the human constitutive androstane receptor
Nucl. Acids Res. 2003 31: 3194-3207; doi:10.1093/nar/gkg419 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Rashada C. Alexander, Ashley K. Johnson, Jeffrey A. Thorpe, Travis Gevedon, and Stephen M. Testa

Canonical nucleosides can be utilized by T4 DNA ligase as universal template bases at ligation junctions
Nucl. Acids Res. 2003 31: 3208-3216; doi:10.1093/nar/gkg415 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Guido Plotz, Jochen Raedle, Angela Brieger, Jörg Trojan, and Stefan Zeuzem

N-terminus of hMLH1 confers interaction of hMutL and hMutLß with hMutS
Nucl. Acids Res. 2003 31: 3217-3226; doi:10.1093/nar/gkg420 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Michel Fromant, Maria-Laura Ferri-Fioni, Pierre Plateau, and Sylvain Blanquet

Peptidyl-tRNA hydrolase from Sulfolobus solfataricus
Nucl. Acids Res. 2003 31: 3227-3235; doi:10.1093/nar/gkg428 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sourav Banerjee and Tapas K. Kundu

The acidic C-terminal domain and A-box of HMGB-1 regulates p53-mediated transcription
Nucl. Acids Res. 2003 31: 3236-3247; doi:10.1093/nar/gkg412 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Shravanti Rampalli, Asavari Kulkarni, Pavan Kumar, Devraj Mogare, Sanjeev Galande, Debashis Mitra, and Samit Chattopadhyay

Stimulation of Tat-independent transcriptional processivity from the HIV-1 LTR promoter by matrix attachment regions
Nucl. Acids Res. 2003 31: 3248-3256; doi:10.1093/nar/gkg410 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

G. Charles Ostermeier, Zhandong Liu, Rui Pires Martins, Rikki R. Bharadwaj, James Ellis, Sorin Draghici, and Stephen A. Krawetz

Nuclear matrix association of the human ß-globin locus utilizing a novel approach to quantitative real-time PCR
Nucl. Acids Res. 2003 31: 3257-3266; doi:10.1093/nar/gkg424 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Makoto Koizumi, Koji Morita, Makiko Daigo, Shinya Tsutsumi, Koji Abe, Satoshi Obika, and Takeshi Imanishi

Triplex formation with 2'-O,4'-C-ethylene-bridged nucleic acids (ENA) having C3'-endo conformation at physiological pH
Nucl. Acids Res. 2003 31: 3267-3273; doi:10.1093/nar/gkg416 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

R. N. de Jong, L. A. T. Meijer, and P. C. van der Vliet

DNA binding properties of the adenovirus DNA replication priming protein pTP
Nucl. Acids Res. 2003 31: 3274-3286; doi:10.1093/nar/gkg405 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Gunnar Wrobel, Joerg Schlingemann, Lars Hummerich, Heidi Kramer, Peter Lichter, and Meinhard Hahn

Optimization of high-density cDNA-microarray protocols by ‘design of experiments’
Nucl. Acids Res. 2003 31: e67; doi:10.1093/nar/gng067 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yan Yuanxin, An Chengcai, Li Li, Gu Jiayu, Tan Guihong, and Chen Zhangliang

T-linker-specific ligation PCR (T-linker PCR): an advanced PCR technique for chromosome walking or for isolation of tagged DNA ends
Nucl. Acids Res. 2003 31: e68; doi:10.1093/nar/gng068 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Wilfried Weber, René R. Marty, Nils Link, Martin Ehrbar, Bettina Keller, Cornelia C. Weber, Andreas H. Zisch, Christoph Heinzen, Valentin Djonov, and Martin Fussenegger

Conditional human VEGF-mediated vascularization in chicken embryos using a novel temperature-inducible gene regulation (TIGR) system
Nucl. Acids Res. 2003 31: e69; doi:10.1093/nar/gng069 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Errata:

ERRATUM
Nucl. Acids Res. 2003 31: 3287; doi:10.1093/nar/gkg470 [Extract] [FREE Full Text] [Print PDF] [Request Permissions]  

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