Nucleic Acids Research

Articles:

Isabel J. Kingston, Niall A. Gormley, and Stephen E. Halford

DNA supercoiling enables the Type IIS restriction enzyme BspMI to recognise the relative orientation of two DNA sequences
Nucl. Acids Res. 2003 31: 5221-5228; doi:10.1093/nar/gkg743 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Dejan Ristic, Mauro Modesti, Roland Kanaar, and Claire Wyman

Rad52 and Ku bind to different DNA structures produced early in double-strand break repair
Nucl. Acids Res. 2003 31: 5229-5237; doi:10.1093/nar/gkg729 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Amandine Gautier-Stein, Claire Domon-Dell, Alexandre Calon, Isabelle Bady, Jean-Noël Freund, Gilles Mithieux, and Fabienne Rajas

Differential regulation of the glucose-6-phosphatase TATA box by intestine-specific homeodomain proteins CDX1 and CDX2
Nucl. Acids Res. 2003 31: 5238-5246; doi:10.1093/nar/gkg747 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

You-Di Liao, Sui-Chi Wang, Ying-Jen Leu, Chiu-Feng Wang, Shu-Ting Chang, Yu-Ting Hong, Yun-Ru Pan, and Chinpan Chen

The structural integrity exerted by N-terminal pyroglutamate is crucial for the cytotoxicity of frog ribonuclease from Rana pipiens
Nucl. Acids Res. 2003 31: 5247-5255; doi:10.1093/nar/gkg746 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

G. H. C. M. Hettiarachchi, Vandana Yadav, M. K. Reddy, Sudip Chattopadhyay, and Sudhir K. Sopory

Light-mediated regulation defines a minimal promoter region of TOP2
Nucl. Acids Res. 2003 31: 5256-5265; doi:10.1093/nar/gkg744 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Lihua Ding, Jinghua Yan, Jianhua Zhu, Hongjun Zhong, Qiujun Lu, Zonghua Wang, Cuifen Huang, and Qinong Ye

Ligand-independent activation of estrogen receptor by XBP-1
Nucl. Acids Res. 2003 31: 5266-5274; doi:10.1093/nar/gkg731 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Amitabh V. Nimonkar and Paul E. Boehmer

On the mechanism of strand assimilation by the herpes simplex virus type-1 single-strand DNA-binding protein (ICP8)
Nucl. Acids Res. 2003 31: 5275-5281; doi:10.1093/nar/gkg740 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Thibaut Michel, Camille Martinand-Mari, Françoise Debart, Bernard Lebleu, Ian Robbins, and Jean-Jacques Vasseur

Cationic phosphoramidate -oligonucleotides efficiently target single-stranded DNA and RNA and inhibit hepatitis C virus IRES-mediated translation
Nucl. Acids Res. 2003 31: 5282-5290; doi:10.1093/nar/gkg733 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Anita Berg, Trine J. Meza, Mirela Mahic, Tage Thorstensen, Kjetil Kristiansen, and Reidunn B. Aalen

Ten members of the Arabidopsis gene family encoding methyl-CpG-binding domain proteins are transcriptionally active and at least one, AtMBD11, is crucial for normal development
Nucl. Acids Res. 2003 31: 5291-5304; doi:10.1093/nar/gkg735 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Tanushri Sengupta, Mandira Mukherjee, Chhabinath Mandal, Aditi Das, and Hemanta K. Majumder

Functional dissection of the C-terminal domain of type II DNA topoisomerase from the kinetoplastid hemoflagellate Leishmania donovani
Nucl. Acids Res. 2003 31: 5305-5316; doi:10.1093/nar/gkg727 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Shuyuan Yao, Cameron S. Osborne, Rikki R. Bharadwaj, Peter Pasceri, Tanya Sukonnik, Dylan Pannell, Félix Recillas-Targa, Adam G. West, and James Ellis

Retrovirus silencer blocking by the cHS4 insulator is CTCF independent
Nucl. Acids Res. 2003 31: 5317-5323; doi:10.1093/nar/gkg742 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Chika Sugiura, Yuki Kobayashi, Setsuyuki Aoki, Chieko Sugita, and Mamoru Sugita

Complete chloroplast DNA sequence of the moss Physcomitrella patens: evidence for the loss and relocation of rpoA from the chloroplast to the nucleus
Nucl. Acids Res. 2003 31: 5324-5331; doi:10.1093/nar/gkg726 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Claudia Flohr, Alexander Bürkle, J. Pablo Radicella, and Bernd Epe

Poly(ADP-ribosyl)ation accelerates DNA repair in a pathway dependent on Cockayne syndrome B protein
Nucl. Acids Res. 2003 31: 5332-5337; doi:10.1093/nar/gkg715 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Zhaolei Zhang and Mark Gerstein

Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes
Nucl. Acids Res. 2003 31: 5338-5348; doi:10.1093/nar/gkg745 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

María Pilar Bayona-Bafaluy, Rebeca Acín-Pérez, James C. Mullikin, Jeong Soon Park, Raquel Moreno-Loshuertos, Peiqing Hu, Acisclo Pérez-Martos, Patricio Fernández-Silva, Yidong Bai, and José Antonio Enríquez

Revisiting the mouse mitochondrial DNA sequence
Nucl. Acids Res. 2003 31: 5349-5355; doi:10.1093/nar/gkg739 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Eun-Joo Kim, Jong-Sup Park, and Soo-Jong Um

Identification of Daxx interacting with p73, one of the p53 family, and its regulation of p53 activity by competitive interaction with PML
Nucl. Acids Res. 2003 31: 5356-5367; doi:10.1093/nar/gkg741 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Bo Yu, Pran K. Datta, and Srilata Bagchi

Stability of the Sp3–DNA complex is promoter-specific: Sp3 efficiently competes with Sp1 for binding to promoters containing multiple Sp-sites
Nucl. Acids Res. 2003 31: 5368-5376; doi:10.1093/nar/gkg706 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Huichen Wang, Ange Ronel Perrault, Yoshihiko Takeda, Wei Qin, Hongyan Wang, and George Iliakis

Biochemical evidence for Ku-independent backup pathways of NHEJ
Nucl. Acids Res. 2003 31: 5377-5388; doi:10.1093/nar/gkg728 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Corinne Lours, Olivier Bardot, Dorothea Godt, Frank A. Laski, and Jean-Louis Couderc

The Drosophila melanogaster BTB proteins bric à brac bind DNA through a composite DNA binding domain containing a pipsqueak and an AT-Hook motif
Nucl. Acids Res. 2003 31: 5389-5398; doi:10.1093/nar/gkg724 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Jung-Hoon Yoon, Shigenori Iwai, Timothy R. O’Connor, and Gerd P. Pfeifer

Human thymine DNA glycosylase (TDG) and methyl-CpG-binding protein 4 (MBD4) excise thymine glycol (Tg) from a Tg:G mispair
Nucl. Acids Res. 2003 31: 5399-5404; doi:10.1093/nar/gkg730 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Fokke Lindeboom, Nynke Gillemans, Alar Karis, Martine Jaegle, Dies Meijer, Frank Grosveld, and Sjaak Philipsen

A tissue-specific knockout reveals that Gata1 is not essential for Sertoli cell function in the mouse
Nucl. Acids Res. 2003 31: 5405-5412; doi:10.1093/nar/gkg723 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Zhenjiu Liu, Yuan Gao, and Yinsheng Wang

Identification and characterization of a novel cross-link lesion in d(CpC) upon 365-nm irradiation in the presence of 2-methyl-1,4-naphthoquinone
Nucl. Acids Res. 2003 31: 5413-5424; doi:10.1093/nar/gkg736 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

G. Krishnamoorthy, Bernard Roques, Jean-Luc Darlix, and Yves Mély

DNA condensation by the nucleocapsid protein of HIV-1: a mechanism ensuring DNA protection
Nucl. Acids Res. 2003 31: 5425-5432; doi:10.1093/nar/gkg738 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Svetlana A. Shabalina, Aleksey Y. Ogurtsov, David J. Lipman, and Alexey S. Kondrashov

Patterns in interspecies similarity correlate with nucleotide composition in mammalian 3'UTRs
Nucl. Acids Res. 2003 31: 5433-5439; doi:10.1093/nar/gkg751 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jerzy Osipiuk, Martin A. Walsh, and Andrzej Joachimiak

Crystal structure of MboIIA methyltransferase
Nucl. Acids Res. 2003 31: 5440-5448; doi:10.1093/nar/gkg713 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Eric Ennifar, Joachim E. W. Meyer, Frank Buchholz, A. Francis Stewart, and Dietrich Suck

Crystal structure of a wild-type Cre recombinase–loxP synapse reveals a novel spacer conformation suggesting an alternative mechanism for DNA cleavage activation
Nucl. Acids Res. 2003 31: 5449-5460; doi:10.1093/nar/gkg732 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

NAR Methods Online:

Tomoaki Abe, Judith Langenick, and Jeffrey G. Williams

Rapid generation of gene disruption constructs by in vitro transposition and identification of a Dictyostelium protein kinase that regulates its rate of growth and development
Nucl. Acids Res. 2003 31: e107; doi:10.1093/nar/gng095 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Youdong Mao, Chunxiong Luo, and Qi Ouyang

Studies of temperature-dependent electronic transduction on DNA hairpin loop sensor
Nucl. Acids Res. 2003 31: e108; doi:10.1093/nar/gng108 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

David S. Rickman, Christopher J. Herbert, and Lawrence P. Aggerbeck

Optimizing spotting solutions for increased reproducibility of cDNA microarrays
Nucl. Acids Res. 2003 31: e109; doi:10.1093/nar/gng109 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Michael B. Murphy, Shirin T. Fuller, Paul M. Richardson, and Sharon A. Doyle

An improved method for the in vitro evolution of aptamers and applications in protein detection and purification
Nucl. Acids Res. 2003 31: e110; doi:10.1093/nar/gng110 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Gökhan Tolun and Richard S. Myers

A real-time DNase assay (ReDA) based on PicoGreen^® fluorescence
Nucl. Acids Res. 2003 31: e111; doi:10.1093/nar/gng111 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Shinya Kaneko, Kenji Tsuge, Takashi Takeuchi, and Mitsuhiro Itaya

Conversion of sub-megasized DNA to desired structures using a novel Bacillus subtilis genome vector
Nucl. Acids Res. 2003 31: e112; doi:10.1093/nar/gng114 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Dmitri Chilov, Cornelia Fux, Hana Joch, and Martin Fussenegger

Identification of a novel proliferation-inducing determinant using lentiviral expression cloning
Nucl. Acids Res. 2003 31: e113; doi:10.1093/nar/gng115 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Aleksander Masny and Andrzej Plucienniczak

Ligation mediated PCR performed at low denaturation temperatures—PCR melting profiles
Nucl. Acids Res. 2003 31: e114; doi:10.1093/nar/gng116 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Corrigenda:

CORRIGENDUM
Nucl. Acids Res. 2003 31: 5461; doi:10.1093/nar/GKG772 [Extract] [FREE Full Text] [Print PDF] [Request Permissions]  

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