Nucleic Acids Research

Articles:

Wil A. M. Loenen

Tracking EcoKI and DNA fifty years on: a golden story full of surprises
Nucl. Acids Res. 2003 31: 7059-7069; doi:10.1093/nar/gkg944 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Igor Kanevsky, Natalya Vasilenko, Hélène Dumay-Odelot, and Philippe Fossé

In vitro characterization of a base pairing interaction between the primer binding site and the minimal packaging signal of avian leukosis virus genomic RNA
Nucl. Acids Res. 2003 31: 7070-7082; doi:10.1093/nar/gkg942 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Anan Ragab and Andrew Travers

HMG-D and histone H1 alter the local accessibility of nucleosomal DNA
Nucl. Acids Res. 2003 31: 7083-7089; doi:10.1093/nar/gkg923 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Mitsumasa Hanaoka, Kengo Kanamaru, Hideo Takahashi, and Kan Tanaka

Molecular genetic analysis of chloroplast gene promoters dependent on SIG2, a nucleus-encoded sigma factor for the plastid-encoded RNA polymerase, in Arabidopsis thaliana
Nucl. Acids Res. 2003 31: 7090-7098; doi:10.1093/nar/gkg935 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Michael Strong, Thomas G. Graeber, Morgan Beeby, Matteo Pellegrini, Michael J. Thompson, Todd O. Yeates, and David Eisenberg

Visualization and interpretation of protein networks in Mycobacterium tuberculosis based on hierarchical clustering of genome-wide functional linkage maps
Nucl. Acids Res. 2003 31: 7099-7109; doi:10.1093/nar/gkg924 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Evgueni Ivakine, Krasimir Spasov, David Frendewey, and Ross N. Nazar

Functional significance of intermediate cleavages in the 3'ETS of the pre-rRNA from Schizosaccharomyces pombe
Nucl. Acids Res. 2003 31: 7110-7116; doi:10.1093/nar/gkg932 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Xiang Xu, Yunqing Liu, Susan Weiss, Eddy Arnold, Stefan G. Sarafianos, and Jianping Ding

Molecular model of SARS coronavirus polymerase: implications for biochemical functions and drug design
Nucl. Acids Res. 2003 31: 7117-7130; doi:10.1093/nar/gkg916 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yongping Pan and Alexander D. MacKerell, Jr

Altered structural fluctuations in duplex RNA versus DNA: a conformational switch involving base pair opening
Nucl. Acids Res. 2003 31: 7131-7140; doi:10.1093/nar/gkg941 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Yuuki Ono, Kazunori Tomita, Akira Matsuura, Takuro Nakagawa, Hisao Masukata, Masahiro Uritani, Takashi Ushimaru, and Masaru Ueno

A novel allele of fission yeast rad11 that causes defects in DNA repair and telomere length regulation
Nucl. Acids Res. 2003 31: 7141-7149; doi:10.1093/nar/gkg917 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Frank Seela and Rita Kröschel

The base pairing properties of 8-aza-7-deaza-2'-deoxyisoguanosine and 7-halogenated derivatives in oligonucleotide duplexes with parallel and antiparallel chain orientation
Nucl. Acids Res. 2003 31: 7150-7158; doi:10.1093/nar/gkg926 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Brooke L. Heidenfelder and Michael D. Topal

Effects of sequence on repeat expansion during DNA replication
Nucl. Acids Res. 2003 31: 7159-7164; doi:10.1093/nar/gkg920 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yun Sok Lee, Hyoung Ho Lee, Jiyoung Park, Eung Jae Yoo, Carlotta A. Glackin, Young Il Choi, Sung Ho Jeon, Rho Hyun Seong, Sang Dai Park, and Jae Bum Kim

Twist2, a novel ADD1/SREBP1c interacting protein, represses the transcriptional activity of ADD1/SREBP1c
Nucl. Acids Res. 2003 31: 7165-7174; doi:10.1093/nar/gkg934 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Naoshi Kojima, Kaori Inoue, Rina Nakajima-Shibata, Shun-ichi Kawahara, and Eiko Ohtsuka

A new, but old, nucleoside analog: the first synthesis of 1-deaza-2'-deoxyguanosine and its properties as a nucleoside and as oligodeoxynucleotides
Nucl. Acids Res. 2003 31: 7175-7188; doi:10.1093/nar/gkh154 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Susan Jones, Hugh P. Shanahan, Helen M. Berman, and Janet M. Thornton

Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins
Nucl. Acids Res. 2003 31: 7189-7198; doi:10.1093/nar/gkg922 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Katsuki Ono, Osamu Kusano, Sakurako Shimotakahara, Mitsuhiro Shimizu, Toshimasa Yamazaki, and Heisaburo Shindo

The linker histone homolog Hho1p from Saccharomyces cerevisiae represents a winged helix–turn–helix fold as determined by NMR spectroscopy
Nucl. Acids Res. 2003 31: 7199-7207; doi:10.1093/nar/gkg931 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Katherine S. Long and Bo T. Porse

A conserved chloramphenicol binding site at the entrance to the ribosomal peptide exit tunnel
Nucl. Acids Res. 2003 31: 7208-7215; doi:10.1093/nar/gkg945 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Narottam Acharya, Ramappa K. Talawar, K. Saikrishnan, M. Vijayan, and Umesh Varshney

Substitutions at tyrosine 66 of Escherichia coli uracil DNA glycosylase lead to characterization of an efficient enzyme that is recalcitrant to product inhibition
Nucl. Acids Res. 2003 31: 7216-7226; doi:10.1093/nar/gkg918 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Christian Kühne, Marie-Louise Tjörnhammar, Sándor Pongor, Lawrence Banks, and András Simoncsits

Repair of a minimal DNA double-strand break by NHEJ requires DNA-PKcs and is controlled by the ATM/ATR checkpoint
Nucl. Acids Res. 2003 31: 7227-7237; doi:10.1093/nar/gkg937 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Eric Weterings, Nicole S. Verkaik, Hennie T. Brüggenwirth, Jan H. J. Hoeijmakers, and Dik C. van Gent

The role of DNA dependent protein kinase in synapsis of DNA ends
Nucl. Acids Res. 2003 31: 7238-7246; doi:10.1093/nar/gkg889 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Thorarinn Blondal, Sigridur H. Hjorleifsdottir, Olafur F. Fridjonsson, Arnthor Ævarsson, Sigurlaug Skirnisdottir, Anna Gudny Hermannsdottir, Gudmundur O. Hreggvidsson, Albert Vernon Smith, and Jakob K. Kristjansson

Discovery and characterization of a thermostable bacteriophage RNA ligase homologous to T4 RNA ligase 1
Nucl. Acids Res. 2003 31: 7247-7254; doi:10.1093/nar/gkg914 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Morten O. Christensen, Hans U. Barthelmes, Fritz Boege, and Christian Mielke

Residues 190–210 of human topoisomerase I are required for enzyme activity in vivo but not in vitro
Nucl. Acids Res. 2003 31: 7255-7263; doi:10.1093/nar/gkg927 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Longchuan Bai and Juanita L. Merchant

Transcription factor ZBP-89 is required for STAT1 constitutive expression
Nucl. Acids Res. 2003 31: 7264-7270; doi:10.1093/nar/gkg929 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jonathan E. Moore and James A. Lake

Gene structure prediction in syntenic DNA segments
Nucl. Acids Res. 2003 31: 7271-7279; doi:10.1093/nar/gkg905 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ye Ding and Charles E. Lawrence

A statistical sampling algorithm for RNA secondary structure prediction
Nucl. Acids Res. 2003 31: 7280-7301; doi:10.1093/nar/gkg938 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Marc Folichon, Véronique Arluison, Olivier Pellegrini, Eric Huntzinger, Philippe Régnier, and Eliane Hajnsdorf

The poly(A) binding protein Hfq protects RNA from RNase E and exoribonucleolytic degradation
Nucl. Acids Res. 2003 31: 7302-7310; doi:10.1093/nar/gkg915 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Mahadevan Seetharaman, Caroline Williams, Christopher J. Cramer, and Karin Musier-Forsyth

Effect of G-1 on histidine tRNA microhelix conformation
Nucl. Acids Res. 2003 31: 7311-7321; doi:10.1093/nar/gkg930 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

NAR Methods Online:

Xiaowei Wang and Brian Seed

A PCR primer bank for quantitative gene expression analysis
Nucl. Acids Res. 2003 31: e154; doi:10.1093/nar/gng154 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Thorarinn Blondal, Benedikt G. Waage, Sigurdur V. Smarason, Frosti Jonsson, Sigridur B. Fjalldal, Kari Stefansson, Jeffery Gulcher, and Albert V. Smith

A novel MALDI–TOF based methodology for genotyping single nucleotide polymorphisms
Nucl. Acids Res. 2003 31: e155; doi:10.1093/nar/gng156 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Errata:

ERRATUM
Nucl. Acids Res. 2003 31: 7322; doi:10.1093/nar/gkg946 [Extract] [FREE Full Text] [Print PDF] [Request Permissions]  

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