Nucleic Acids Research

Editorial:

OBITUARY
Nucl. Acids Res. 2003 31: 1119; doi:10.1093/nar/gkg260 [Extract] [FREE Full Text] [Print PDF] [Request Permissions]  

Articles:

Elisabeth Bon, Serge Casaregola, Gaëlle Blandin, Bertrand Llorente, Cécile Neuvéglise, Martin Munsterkotter, Ulrich Guldener, Hans-Werner Mewes, Jacques Van Helden, Bernard Dujon, and Claude Gaillardin

Molecular evolution of eukaryotic genomes: hemiascomycetous yeast spliceosomal introns
Nucl. Acids Res. 2003 31: 1121-1135; doi:10.1093/nar/gkg213 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

S. Bartl, J. Ban, H. Weninger, G. Jug, and H. Kovar

A small nuclear RNA, hdm365, is the major processing product of the human mdm2 gene
Nucl. Acids Res. 2003 31: 1136-1147; doi:10.1093/nar/gkg207 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

S. Lafarge and M.-H. Montané

Characterization of Arabidopsis thaliana ortholog of the human breast cancer susceptibility gene 1: AtBRCA1, strongly induced by gamma rays
Nucl. Acids Res. 2003 31: 1148-1155; doi:10.1093/nar/gkg202 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Daisuke Miyoshi, Akihiro Nakao, and Naoki Sugimoto

Structural transition from antiparallel to parallel G-quadruplex of d(G₄T₄G₄) induced by Ca²⁺
Nucl. Acids Res. 2003 31: 1156-1163; doi:10.1093/nar/gkg211 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Sean Palmer, Ezra Schildkraut, Raquel Lazarin, Jimmy Nguyen, and Jac A. Nickoloff

Gene conversion tracts in Saccharomyces cerevisiae can be extremely short and highly directional
Nucl. Acids Res. 2003 31: 1164-1173; doi:10.1093/nar/gkg219 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

John S. Tregoning, Peter Nixon, Hiroshi Kuroda, Zora Svab, Simon Clare, Frances Bowe, Neil Fairweather, Jimmy Ytterberg, Klaas J. van Wijk, Gordon Dougan, and Pal Maliga

Expression of tetanus toxin Fragment C in tobacco chloroplasts
Nucl. Acids Res. 2003 31: 1174-1179; doi:10.1093/nar/gkg221 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

David A. Jackson, Jennifer C. McDowell, and Ann Dean

ß-Globin locus control region HS2 and HS3 interact structurally and functionally
Nucl. Acids Res. 2003 31: 1180-1190; doi:10.1093/nar/gkg217 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Masaki Hori, Shuji Yonei, Hiroshi Sugiyama, Katsuhito Kino, Kazuo Yamamoto, and Qiu-Mei Zhang

Identification of high excision capacity for 5-hydroxymethyluracil mispaired with guanine in DNA of Escherichia coli MutM, Nei and Nth DNA glycosylases
Nucl. Acids Res. 2003 31: 1191-1196; doi:10.1093/nar/gkg223 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kazuhito Akama and Hildburg Beier

Translational nonsense codon suppression as indicator for functional pre-tRNA splicing in transformed Arabidopsis hypocotyl-derived calli
Nucl. Acids Res. 2003 31: 1197-1207; doi:10.1093/nar/gkg220 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yong-Dong Wang, Jaroslaw Dziegielewski, Nicholas R. Wurtz, Barbara Dziegielewska, Peter B. Dervan, and Terry A. Beerman

DNA crosslinking and biological activity of a hairpin polyamide–chlorambucil conjugate
Nucl. Acids Res. 2003 31: 1208-1215; doi:10.1093/nar/gkg215 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Mi-Kyung Lee, Sung-Hun Bae, Chin-Ju Park, Hae-Kap Cheong, Chaejoon Cheong, and Byong-Seok Choi

A single-nucleotide natural variation (U4 to C4) in an influenza A virus promoter exhibits a large structural change: implications for differential viral RNA synthesis by RNA-dependent RNA polymerase
Nucl. Acids Res. 2003 31: 1216-1223; doi:10.1093/nar/gkg214 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Qun Yu, Runxiang Qiu, Travis B. Foland, Dan Griesen, Carl S. Galloway, Ya-Hui Chiu, Joseph Sandmeier, James R. Broach, and Xin Bi

Rap1p and other transcriptional regulators can function in defining distinct domains of gene expression
Nucl. Acids Res. 2003 31: 1224-1233; doi:10.1093/nar/gkg200 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

M. Madan Babu and Sarah A. Teichmann

Evolution of transcription factors and the gene regulatory network in Escherichia coli
Nucl. Acids Res. 2003 31: 1234-1244; doi:10.1093/nar/gkg210 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Xiaokang Pan, Hong Liu, Jonathan Clarke, Jonathan Jones, Mike Bevan, and Lincoln Stein

ATIDB: Arabidopsis thaliana insertion database
Nucl. Acids Res. 2003 31: 1245-1251; doi:10.1093/nar/gkg222 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Gayatri Yatherajam, Lei Zhang, Susan M. Kraemer, and Laurie A. Stargell

Protein–protein interaction map for yeast TFIID
Nucl. Acids Res. 2003 31: 1252-1260; doi:10.1093/nar/gkg204 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Akiko Kobayashi, Tsuyoshi Miyake, Masashi Kawaichi, and Tetsuro Kokubo

Mutations in the histone fold domain of the TAF12 gene show synthetic lethality with the TAF1 gene lacking the TAF N-terminal domain (TAND) by different mechanisms from those in the SPT15 gene encoding the TATA box-binding protein (TBP)
Nucl. Acids Res. 2003 31: 1261-1274; doi:10.1093/nar/gkg180 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Estelle Dumas, Cathy Staedel, Marie Colombat, Sandrine Reigadas, Sandrine Chabas, Thérèse Astier-Gin, Annie Cahour, Simon Litvak, and Michel Ventura

A promoter activity is present in the DNA sequence corresponding to the hepatitis C virus 5' UTR
Nucl. Acids Res. 2003 31: 1275-1281; doi:10.1093/nar/gkg199 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Thomas D. Schaal, William G. Mallet, Dustin L. McMinn, Nam V. Nguyen, Michelle M. Sopko, Sam John, and Bhavin S. Parekh

Inhibition of human papilloma virus E2 DNA binding protein by covalently linked polyamides
Nucl. Acids Res. 2003 31: 1282-1291; doi:10.1093/nar/gkg206 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kelly M. Leach, Karen F. Vieira, Sung-Hae Lee Kang, Ara Aslanian, Martin Teichmann, Robert G. Roeder, and Jörg Bungert

Characterization of the human ß-globin downstream promoter region
Nucl. Acids Res. 2003 31: 1292-1301; doi:10.1093/nar/gkg209 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Shiyou Chen, Magdalena Kulik, and Robert J. Lechleider

Smad proteins regulate transcriptional induction of the SM22 gene by TGF-ß
Nucl. Acids Res. 2003 31: 1302-1310; doi:10.1093/nar/gkg224 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Wenonah A. Vercoutere, Stephen Winters-Hilt, Veronica S. DeGuzman, David Deamer, Sam E. Ridino, Joseph T. Rodgers, Hugh E. Olsen, Andre Marziali, and Mark Akeson

Discrimination among individual Watson–Crick base pairs at the termini of single DNA hairpin molecules
Nucl. Acids Res. 2003 31: 1311-1318; doi:10.1093/nar/gkg218 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Andrew Tsourkas, Mark A. Behlke, Scott D. Rose, and Gang Bao

Hybridization kinetics and thermodynamics of molecular beacons
Nucl. Acids Res. 2003 31: 1319-1330; doi:10.1093/nar/gkg212 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jen Bohon and Carlos R. de los Santos

Structural effect of the anticancer agent 6-thioguanine on duplex DNA
Nucl. Acids Res. 2003 31: 1331-1338; doi:10.1093/nar/gkg203 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Piotr A. Ziolkowski, Guillaume Blanc, and Jan Sadowski

Structural divergence of chromosomal segments that arose from successive duplication events in the Arabidopsis genome
Nucl. Acids Res. 2003 31: 1339-1350; doi:10.1093/nar/gkg201 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Ann-Karin Olsen, Nur Duale, Magnar Bjørås, Cathrine T. Larsen, Richard Wiger, Jørn A. Holme, Erling C. Seeberg, and Gunnar Brunborg

Limited repair of 8-hydroxy-7,8-dihydroguanine residues in human testicular cells
Nucl. Acids Res. 2003 31: 1351-1363; doi:10.1093/nar/gkg216 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Adrian M. Davies, Stuart Hershman, Gabriel J. Stabley, Jan B. Hoek, Jason Peterson, and Alan Cahill

A Ca²⁺-induced mitochondrial permeability transition causes complete release of rat liver endonuclease G activity from its exclusive location within the mitochondrial intermembrane space. Identification of a novel endo-exonuclease activity residing within the mitochondrial matrix
Nucl. Acids Res. 2003 31: 1364-1373; doi:10.1093/nar/gkg205 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Jost Seibler, Branko Zevnik, Birgit Küter-Luks, Susanne Andreas, Heidrun Kern, Thomas Hennek, Anja Rode, Cornelia Heimann, Nicole Faust, Gunther Kauselmann, Michael Schoor, Rudolf Jaenisch, Klaus Rajewsky, Ralf Kühn, and Frieder Schwenk

Rapid generation of inducible mouse mutants
Nucl. Acids Res. 2003 31: e12; doi:10.1093/nar/gng012 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Vineet Gupta, Alex Cherkassky, Pamela Chatis, Richard Joseph, Andrew L. Johnson, Jeffrey Broadbent, Tom Erickson, and James DiMeo

Directly labeled mRNA produces highly precise and unbiased differential gene expression data
Nucl. Acids Res. 2003 31: e13; doi:10.1093/nar/gng013 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Martin J. Hessner, Xujing Wang, Katie Hulse, Lisa Meyer, Yan Wu, Steven Nye, Sun-Wei Guo, and Soumitra Ghosh

Three color cDNA microarrays: quantitative assessment through the use of fluorescein-labeled probes
Nucl. Acids Res. 2003 31: e14; doi:10.1093/nar/gng014 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Rafael A. Irizarry, Benjamin M. Bolstad, Francois Collin, Leslie M. Cope, Bridget Hobbs, and Terence P. Speed

Summaries of Affymetrix GeneChip probe level data
Nucl. Acids Res. 2003 31: e15; doi:10.1093/nar/gng015 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Fabian Köhler

A yeast-based growth assay for the analysis of site-specific proteases
Nucl. Acids Res. 2003 31: e16; doi:10.1093/nar/gng016 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Antonello Romani, Emanuela Guerra, Marco Trerotola, and Saverio Alberti

Detection and analysis of spliced chimeric mRNAs in sequence databanks
Nucl. Acids Res. 2003 31: e17; doi:10.1093/nar/gng017 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

M. Juanita Martinez, Anthony D. Aragon, Angelina L. Rodriguez, Jose M. Weber, Jerilyn A. Timlin, Michael B. Sinclair, David M. Haaland, and Margaret Werner-Washburne

Identification and removal of contaminating fluorescence from commercial and in-house printed DNA microarrays
Nucl. Acids Res. 2003 31: e18; doi:10.1093/nar/gng018 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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