Nucleic Acids Research

Articles:

Krithika Subramanian, Wiriya Rutvisuttinunt, Walter Scott, and Richard S. Myers

The enzymatic basis of processivity in exonuclease
Nucl. Acids Res. 2003 31: 1585-1596; doi:10.1093/nar/gkg266 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Marina Roberti, Paola Loguercio Polosa, Francesco Bruni, Clara Musicco, Maria Nicola Gadaleta, and Palmiro Cantatore

DmTTF, a novel mitochondrial transcription termination factor that recognises two sequences of Drosophila melanogaster mitochondrial DNA
Nucl. Acids Res. 2003 31: 1597-1604; doi:10.1093/nar/gkg272 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sophie Redon, Sophie Bombard, Miguel-Angel Elizondo-Riojas, and Jean-Claude Chottard

Platinum cross-linking of adenines and guanines on the quadruplex structures of the AG₃(T₂AG₃)₃ and (T₂AG₃)₄ human telomere sequences in Na⁺ and K⁺ solutions
Nucl. Acids Res. 2003 31: 1605-1613; doi:10.1093/nar/gkg259 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

C. E. Bullerwell, L. Forget, and B. F. Lang

Evolution of monoblepharidalean fungi based on complete mitochondrial genome sequences
Nucl. Acids Res. 2003 31: 1614-1623; doi:10.1093/nar/gkg264 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

M.-T. Michael Lee, Klaus Klumpp, Paul Digard, and Laurence Tiley

Activation of influenza virus RNA polymerase by the 5' and 3' terminal duplex of genomic RNA
Nucl. Acids Res. 2003 31: 1624-1632; doi:10.1093/nar/gkg253 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Karen A. Bunting, S. Mark Roe, Anthony Headley, Tom Brown, Renos Savva, and Laurence H. Pearl

Crystal structure of the Escherichia coli dcm very-short-patch DNA repair endonuclease bound to its reaction product-site in a DNA superhelix
Nucl. Acids Res. 2003 31: 1633-1639; doi:10.1093/nar/gkg273 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Tanfis Istiaq Alam, Tomotake Kanki, Tsuyoshi Muta, Koutarou Ukaji, Yoshito Abe, Hiroshi Nakayama, Koji Takio, Naotaka Hamasaki, and Dongchon Kang

Human mitochondrial DNA is packaged with TFAM
Nucl. Acids Res. 2003 31: 1640-1645; doi:10.1093/nar/gkg251 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Klaus Förstemann, Arthur J. Zaug, Thomas R. Cech, and Joachim Lingner

Yeast telomerase is specialized for C/A-rich RNA templates
Nucl. Acids Res. 2003 31: 1646-1655; doi:10.1093/nar/gkg261 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jin Zhong, Michael Karberg, and Alan M. Lambowitz

Targeted and random bacterial gene disruption using a group II intron (targetron) vector containing a retrotransposition-activated selectable marker
Nucl. Acids Res. 2003 31: 1656-1664; doi:10.1093/nar/gkg248 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Wolfgang Knecht, Gitte Ebert Petersen, Michael Paolo Bastner Sandrini, Leif Søndergaard, Birgitte Munch-Petersen, and Jure Piskur

Mosquito has a single multisubstrate deoxyribonucleoside kinase characterized by unique substrate specificity
Nucl. Acids Res. 2003 31: 1665-1672; doi:10.1093/nar/gkg257 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Clifford F. Brunk, Louis C. Lee, Anne B. Tran, and Jinliang Li

Complete sequence of the mitochondrial genome of Tetrahymena thermophila and comparative methods for identifying highly divergent genes
Nucl. Acids Res. 2003 31: 1673-1682; doi:10.1093/nar/gkg270 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Zoran Gojkovic, Lise Rislund, Birgit Andersen, Michael P. B. Sandrini, Paul F. Cook, Klaus D. Schnackerz, and Jure Piskur

Dihydropyrimidine amidohydrolases and dihydroorotases share the same origin and several enzymatic properties
Nucl. Acids Res. 2003 31: 1683-1692; doi:10.1093/nar/gkg258 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Nuria Camarero, Alícia Nadal, María José Barrero, Diego Haro, and Pedro F. Marrero

Histone deacetylase inhibitors stimulate mitochondrial HMG-CoA synthase gene expression via a promoter proximal Sp1 site
Nucl. Acids Res. 2003 31: 1693-1703; doi:10.1093/nar/gkg262 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ivo G. Boneca, Hilde de Reuse, Jean-Charles Epinat, Maude Pupin, Agnès Labigne, and Ivan Moszer

A revised annotation and comparative analysis of Helicobacter pylori genomes
Nucl. Acids Res. 2003 31: 1704-1714; doi:10.1093/nar/gkg250 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Daisuke Nakada, Toshiyasu Shimomura, Kunihiro Matsumoto, and Katsunori Sugimoto

The ATM-related Tel1 protein of Saccharomyces cerevisiae controls a checkpoint response following phleomycin treatment
Nucl. Acids Res. 2003 31: 1715-1724; doi:10.1093/nar/gkg252 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Dávid Szüts, Lisa Kitching, Christo Christov, Aidan Budd, Sew Peak-Chew, and Torsten Krude

RPA is an initiation factor for human chromosomal DNA replication
Nucl. Acids Res. 2003 31: 1725-1734; doi:10.1093/nar/gkg269 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Masatoshi Yoshimasu, Hideki Aihara, Yutaka Ito, Sundaresan Rajesh, Satoko Ishibe, Tsutomu Mikawa, Shigeyuki Yokoyama, and Takehiko Shibata

An NMR study on the interaction of Escherichia coli DinI with RecA–ssDNA complexes
Nucl. Acids Res. 2003 31: 1735-1743; doi:10.1093/nar/gkg256 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Yoko Tacahashi, Steffen Helmling, and Claire L. Moore

Functional dissection of the zinc finger and flanking domains of the Yth1 cleavage/polyadenylation factor
Nucl. Acids Res. 2003 31: 1744-1752; doi:10.1093/nar/gkg265 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Stein Aerts, Gert Thijs, Bert Coessens, Mik Staes, Yves Moreau, and Bart De Moor

Toucan: deciphering the cis-regulatory logic of coregulated genes
Nucl. Acids Res. 2003 31: 1753-1764; doi:10.1093/nar/gkg268 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Mario F. Fraga, Esteban Ballestar, Guillermo Montoya, Panya Taysavang, Paul A. Wade, and Manel Esteller

The affinity of different MBD proteins for a specific methylated locus depends on their intrinsic binding properties
Nucl. Acids Res. 2003 31: 1765-1774; doi:10.1093/nar/gkg249 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Rania Siam and Gregory T. Marczynski

Glutamate at the phosphorylation site of response regulator CtrA provides essential activities without increasing DNA binding
Nucl. Acids Res. 2003 31: 1775-1779; doi:10.1093/nar/gkg271 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Feng-Biao Guo, Hong-Yu Ou, and Chun-Ting Zhang

ZCURVE: a new system for recognizing protein-coding genes in bacterial and archaeal genomes
Nucl. Acids Res. 2003 31: 1780-1789; doi:10.1093/nar/gkg254 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jun Nakamura, Elizabeth R. Purvis, and James A. Swenberg

Micromolar concentrations of hydrogen peroxide induce oxidative DNA lesions more efficiently than millimolar concentrations in mammalian cells
Nucl. Acids Res. 2003 31: 1790-1795; doi:10.1093/nar/gkg263 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Lars Kaderali, Alina Deshpande, John P. Nolan, and P. Scott White

Primer-design for multiplexed genotyping
Nucl. Acids Res. 2003 31: 1796-1802; doi:10.1093/nar/gkg267 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Catheline Vilain, Frederick Libert, David Venet, Sabine Costagliola, and Gilbert Vassart

Small amplified RNA-SAGE: an alternative approach to study transcriptome from limiting amount of mRNA
Nucl. Acids Res. 2003 31: e24; doi:10.1093/nar/gng024 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Siao Ping Tsai, Anne Wong, Elaine Mai, Pamela Chan, Grace Mausisa, Mark Vasser, Parkash Jhurani, Mogens H. Jakobsen, Wai Lee T. Wong, and Jean-Philippe Stephan

Nucleic acid capture assay, a new method for direct quantitation of nucleic acids
Nucl. Acids Res. 2003 31: e25; doi:10.1093/nar/gng025 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Manjit Kaur and G. Mike Makrigiorgos

Novel amplification of DNA in a hairpin structure: towards a radical elimination of PCR errors from amplified DNA
Nucl. Acids Res. 2003 31: e26; doi:10.1093/nar/gng026 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Marleen Dekker, Conny Brouwers, and Hein te Riele

Targeted gene modification in mismatch-repair-deficient embryonic stem cells by single-stranded DNA oligonucleotides
Nucl. Acids Res. 2003 31: e27; doi:10.1093/nar/gng027 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Fabian Köhler and Kristian M. Müller

Adaptation of the Ras-recruitment system to the analysis of interactions between membrane-associated proteins
Nucl. Acids Res. 2003 31: e28; doi:10.1093/nar/gng028 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sun-Hee Leem, Vladimir N. Noskov, Jung-Eun Park, Seung Il Kim, Vladimir Larionov, and Natalay Kouprina

Optimum conditions for selective isolation of genes from complex genomes by transformation-associated recombination cloning
Nucl. Acids Res. 2003 31: e29; doi:10.1093/nar/gng029 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Rob Knight and Michael Yarus

Analyzing partially randomized nucleic acid pools: straight dope on doping
Nucl. Acids Res. 2003 31: e30; doi:10.1093/nar/gng030 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Fumi Nagatsugi, Shigeki Sasaki, Paul S. Miller, and Michael M. Seidman

Site-specific mutagenesis by triple helix-forming oligonucleotides containing a reactive nucleoside analog
Nucl. Acids Res. 2003 31: e31; doi:10.1093/nar/gng031 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Corrigenda:

Corrigendum
Nucl. Acids Res. 2003 31: 1803; doi:10.1093/nar/gkg294 [Extract] [FREE Full Text] [Print PDF] [Request Permissions]  

Erratum:

Erratum
Nucl. Acids Res. 2003 31: 1803; doi:10.1093/nar/gkg302 [Extract] [FREE Full Text] [Print PDF] [Request Permissions]  

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