Nucleic Acids Research

Articles:

Kai Zhou, Kyoo-Tae Choe, Zaheer Zaidi, Qi Wang, Michael B. Mathews, and Chee-Gun Lee

RNA helicase A interacts with dsDNA and topoisomerase II
Nucl. Acids Res. 2003 31: 2253-2260; doi:10.1093/nar/gkg328 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ulrike Hardeland, Marc Bentele, Josef Jiricny, and Primo Schär

The versatile thymine DNA-glycosylase: a comparative characterization of the human, Drosophila and fission yeast orthologs
Nucl. Acids Res. 2003 31: 2261-2271; doi:10.1093/nar/gkg344 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Hiroaki Takaku, Asako Minagawa, Masamichi Takagi, and Masayuki Nashimoto

A candidate prostate cancer susceptibility gene encodes tRNA 3' processing endoribonuclease
Nucl. Acids Res. 2003 31: 2272-2278; doi:10.1093/nar/gkg337 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Joanna Boros, Fei-Ling Lim, Zoulfia Darieva, Aline Pic-Taylor, Ruth Harman, Brian A. Morgan, and Andrew D. Sharrocks

Molecular determinants of the cell-cycle regulated Mcm1p–Fkh2p transcription factor complex
Nucl. Acids Res. 2003 31: 2279-2288; doi:10.1093/nar/gkg347 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Olivier Namy, Guillemette Duchateau-Nguyen, Isabelle Hatin, Sylvie Hermann-Le Denmat, Michel Termier, and Jean-Pierre Rousset

Identification of stop codon readthrough genes in Saccharomyces cerevisiae
Nucl. Acids Res. 2003 31: 2289-2296; doi:10.1093/nar/gkg330 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

David M. Tidd, Caroline M. Broughton, and Richard E. Clark

CpG oligodeoxynucleotide 5mer-induced apoptosis in MOLT-4 leukaemia cells does not require caspase 3 or new protein synthesis
Nucl. Acids Res. 2003 31: 2297-2304; doi:10.1093/nar/gkg334 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

François Fuks, Paul J. Hurd, Rachel Deplus, and Tony Kouzarides

The DNA methyltransferases associate with HP1 and the SUV39H1 histone methyltransferase
Nucl. Acids Res. 2003 31: 2305-2312; doi:10.1093/nar/gkg332 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Hatem Zayed, Zsuzsanna Izsvák, Dheeraj Khare, Udo Heinemann, and Zoltán Ivics

The DNA-bending protein HMGB1 is a cellular cofactor of Sleeping Beauty transposition
Nucl. Acids Res. 2003 31: 2313-2322; doi:10.1093/nar/gkg341 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Priyamvada Rai, Timothy David Cole, Elizabeth Thompson, David P. Millar, and Stuart Linn

Steady-state and time-resolved fluorescence studies indicate an unusual conformation of 2-aminopurine within ATAT and TATA duplex DNA sequences
Nucl. Acids Res. 2003 31: 2323-2332; doi:10.1093/nar/gkg339 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Geetanjali Chawla, Aparna K. Sapra, Uttam Surana, and Usha Vijayraghavan

Dependence of pre-mRNA introns on PRP17, a non-essential splicing factor: implications for efficient progression through cell cycle transitions
Nucl. Acids Res. 2003 31: 2333-2343; doi:10.1093/nar/gkg333 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Angela M. Domitrovich and Gary R. Kunkel

Multiple, dispersed human U6 small nuclear RNA genes with varied transcriptional efficiencies
Nucl. Acids Res. 2003 31: 2344-2352; doi:10.1093/nar/gkg331 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Gertraud Burger, B. Franz Lang, Hans-Peter Braun, and Stefanie Marx

The enigmatic mitochondrial ORF ymf39 codes for ATP synthase chain b
Nucl. Acids Res. 2003 31: 2353-2360; doi:10.1093/nar/gkg326 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Richard Sucgang, Guokai Chen, Wen Liu, Ryan Lindsay, Jing Lu, Donna Muzny, Gad Shaulsky, William Loomis, Richard Gibbs, and Adam Kuspa

Sequence and structure of the extrachromosomal palindrome encoding the ribosomal RNA genes in Dictyostelium
Nucl. Acids Res. 2003 31: 2361-2368; doi:10.1093/nar/gkg348 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Tomas Valenta, Jan Lukas, and Vladimir Korinek

HMG box transcription factor TCF-4’s interaction with CtBP1 controls the expression of the Wnt target Axin2/Conductin in human embryonic kidney cells
Nucl. Acids Res. 2003 31: 2369-2380; doi:10.1093/nar/gkg346 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Irina Calin-Jageman and Allen W. Nicholson

RNA structure-dependent uncoupling of substrate recognition and cleavage by Escherichia coli ribonuclease III
Nucl. Acids Res. 2003 31: 2381-2392; doi:10.1093/nar/gkg329 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ekambar R. Kandimalla, Lakshmi Bhagat, Daqing Wang, Dong Yu, Fu-Gang Zhu, Jimmy Tang, Hui Wang, Ping Huang, Ruiwen Zhang, and Sudhir Agrawal

Divergent synthetic nucleotide motif recognition pattern: design and development of potent immunomodulatory oligodeoxyribonucleotide agents with distinct cytokine induction profiles
Nucl. Acids Res. 2003 31: 2393-2400; doi:10.1093/nar/gkg343 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Torgeir Holen, Mohammed Amarzguioui, Eshrat Babaie, and Hans Prydz

Similar behaviour of single-strand and double-strand siRNAs suggests they act through a common RNAi pathway
Nucl. Acids Res. 2003 31: 2401-2407; doi:10.1093/nar/gkg338 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Stephan Weser, Jana Riemann, Klaus H. Seifart, and Wolfgang Meissner

Assembly and isolation of intermediate steps of transcription complexes formed on the human 5S rRNA gene
Nucl. Acids Res. 2003 31: 2408-2416; doi:10.1093/nar/gkg345 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Masanori Kugita, Yuhei Yamamoto, Takeshi Fujikawa, Tohoru Matsumoto, and Koichi Yoshinaga

RNA editing in hornwort chloroplasts makes more than half the genes functional
Nucl. Acids Res. 2003 31: 2417-2423; doi:10.1093/nar/gkg327 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Olivier Mathieu, Yasushi Yukawa, José-Luis Prieto, Isabelle Vaillant, Masahiro Sugiura, and Sylvette Tourmente

Identification and characterization of transcription factor IIIA and ribosomal protein L5 from Arabidopsis thaliana
Nucl. Acids Res. 2003 31: 2424-2433; doi:10.1093/nar/gkg335 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Takashi Nishiyama, Hiroshi Yamamoto, Norihiro Shibuya, Yoshinori Hatakeyama, Akira Hachimori, Toshio Uchiumi, and Nobuhiko Nakashima

Structural elements in the internal ribosome entry site of Plautia stali intestine virus responsible for binding with ribosomes
Nucl. Acids Res. 2003 31: 2434-2442; doi:10.1093/nar/gkg336 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Dongbo Bu, Yi Zhao, Lun Cai, Hong Xue, Xiaopeng Zhu, Hongchao Lu, Jingfen Zhang, Shiwei Sun, Lunjiang Ling, Nan Zhang, Guojie Li, and Runsheng Chen

Topological structure analysis of the protein–protein interaction network in budding yeast
Nucl. Acids Res. 2003 31: 2443-2450; doi:10.1093/nar/gkg340 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Hitomi Asahara, Ying Li, Jill Fuss, Dale S. Haines, Nikolina Vlatkovic, Mark T. Boyd, and Stuart Linn

Stimulation of human DNA polymerase by MDM2
Nucl. Acids Res. 2003 31: 2451-2459; doi:10.1093/nar/gkg342 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Ralf Hartmer, Niels Storm, Sebastian Boecker, Charles P. Rodi, Franz Hillenkamp, Christian Jurinke, and Dirk van den Boom

RNase T1 mediated base-specific cleavage and MALDI-TOF MS for high-throughput comparative sequence analysis
Nucl. Acids Res. 2003 31: e47; doi:10.1093/nar/gng047 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Tom R. Gaunt, Lesley J. Hinks, Hamid Rassoulian, and Ian N. M. Day

Manual 768 or 384 well microplate gel ‘dry’ electrophoresis for PCR checking and SNP genotyping
Nucl. Acids Res. 2003 31: e48; doi:10.1093/nar/gng048 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Dmitri D. Pervouchine, Joel H. Graber, and Simon Kasif

On the normalization of RNA equilibrium free energy to the length of the sequence
Nucl. Acids Res. 2003 31: e49; doi:10.1093/nar/gng049 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jörg Tost, Philipp Schatz, Matthias Schuster, Kurt Berlin, and Ivo Glynne Gut

Analysis and accurate quantification of CpG methylation by MALDI mass spectrometry
Nucl. Acids Res. 2003 31: e50; doi:10.1093/nar/gng050 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kumaran Narayanan and Peter E. Warburton

DNA modification and functional delivery into human cells using Escherichia coli DH10B
Nucl. Acids Res. 2003 31: e51; doi:10.1093/nar/gng051 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Chen-An Tsai, Yi-Ju Chen, and James J. Chen

Testing for differentially expressed genes with microarray data
Nucl. Acids Res. 2003 31: e52; doi:10.1093/nar/gng052 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Charlie C. Xiang, Mei Chen, Li Ma, Quang N. Phan, Jason M. Inman, Olga A. Kozhich, and Michael J. Brownstein

A new strategy to amplify degraded RNA from small tissue samples for microarray studies
Nucl. Acids Res. 2003 31: e53; doi:10.1093/nar/gng053 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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