Nucleic Acids Research

Articles

Get checked abstract Ho-Sang Jeong, Peter S. Backlund, Hao-Chia Chen, Alexander A. Karavanov, and Robert J. Crouch

RNase H2 of Saccharomyces cerevisiae is a complex of three proteins
Nucl. Acids Res. 2004 32: 407-414; doi:10.1093/nar/gkh209 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material]  

Get checked abstract Sanaa Tork, Isabelle Hatin, Jean-Pierre Rousset, and Céline Fabret

The major 5' determinant in stop codon read-through involves two adjacent adenines
Nucl. Acids Res. 2004 32: 415-421; doi:10.1093/nar/gkh201 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Ginette McKercher, Pierre L. Beaulieu, Daniel Lamarre, Steven LaPlante, Sylvain Lefebvre, Charles Pellerin, Louise Thauvette, and George Kukolj

Specific inhibitors of HCV polymerase identified using an NS5B with lower affinity for template/primer substrate
Nucl. Acids Res. 2004 32: 422-431; doi:10.1093/nar/gkh160 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Anna K. Shchyolkina, Dmitry N. Kaluzhny, Olga F. Borisova, Mary E. Hawkins, Robert L. Jernigan, Thomas M. Jovin, Donna J. Arndt-Jovin, and Victor B. Zhurkin

Formation of an intramolecular triple-stranded DNA structure monitored by fluorescence of 2-aminopurine or 6-methylisoxanthopterin
Nucl. Acids Res. 2004 32: 432-440; doi:10.1093/nar/gkh158 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Roberto Rigatti, Jian-Hua Jia, Nilesh J. Samani, and Ian C. Eperon

Exon repetition: a major pathway for processing mRNA of some genes is allele-specific
Nucl. Acids Res. 2004 32: 441-446; doi:10.1093/nar/gkh197 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material]  

Get checked abstract Xin Lu, Wen Zhang, Zhaohui S. Qin, Kurt E. Kwast, and Jun S. Liu

Statistical resynchronization and Bayesian detection of periodically expressed genes
Nucl. Acids Res. 2004 32: 447-455; doi:10.1093/nar/gkh205 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material]  

Get checked abstract Antony W. Oliver, Jean-Christophe Amé, S. Mark Roe, Valerie Good, Gilbert de Murcia, and Laurence H. Pearl

Crystal structure of the catalytic fragment of murine poly(ADP-ribose) polymerase-2
Nucl. Acids Res. 2004 32: 456-464; doi:10.1093/nar/gkh215 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Martine Roovers, Johan Wouters, Janusz M. Bujnicki, Catherine Tricot, Victor Stalon, Henri Grosjean, and Louis Droogmans

A primordial RNA modification enzyme: the case of tRNA (m¹A) methyltransferase
Nucl. Acids Res. 2004 32: 465-476; doi:10.1093/nar/gkh191 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Akimasa Ichinoe, Mehrdad Behmanesh, Yohei Tominaga, Yasuhiro Ushijima, Seiki Hirano, Yasunari Sakai, Daisuke Tsuchimoto, Kunihiko Sakumi, Norio Wake, and Yusaku Nakabeppu

Identification and characterization of two forms of mouse MUTYH proteins encoded by alternatively spliced transcripts
Nucl. Acids Res. 2004 32: 477-487; doi:10.1093/nar/gkh214 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract P. Couttet and T. Grange

Premature termination codons enhance mRNA decapping in human cells
Nucl. Acids Res. 2004 32: 488-494; doi:10.1093/nar/gkh218 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Ghalia Sabbagh, Kevin J. Fettes, Rajendra Gosain, Ian A. O’Neil, and Richard Cosstick

Synthesis of phosphorothioamidites derived from 3'-thio-3'-deoxythymidine and 3'-thio-2',3'-dideoxycytidine and the automated synthesis of oligodeoxynucleotides containing a 3'-S-phosphorothiolate linkage
Nucl. Acids Res. 2004 32: 495-501; doi:10.1093/nar/gkh189 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material]  

Get checked abstract Alexander H. Farley, Eline T. Luning Prak, and Haig H. Kazazian, Jr

More active human L1 retrotransposons produce longer insertions
Nucl. Acids Res. 2004 32: 502-510; doi:10.1093/nar/gkh202 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material]  

Get checked abstract Chia-Ling Hsu, Ying-Shung Chen, Shih-Yin Tsai, Pei-Jung Tu, Mei-Jung Wang, and Jing-Jer Lin

Interaction of Saccharomyces Cdc13p with Pol1p, Imp4p, Sir4p and Zds2p is involved in telomere replication, telomere maintenance and cell growth control
Nucl. Acids Res. 2004 32: 511-521; doi:10.1093/nar/gkh203 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Marion H. Sibley and Elisabeth A. Raleigh

Cassette-like variation of restriction enzyme genes in Escherichia coli C and relatives
Nucl. Acids Res. 2004 32: 522-534; doi:10.1093/nar/gkh194 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Xiaopeng Bai, Sobin Kim, Zengmin Li, Nicholas J. Turro, and Jingyue Ju

Design and synthesis of a photocleavable biotinylated nucleotide for DNA analysis by mass spectrometry
Nucl. Acids Res. 2004 32: 535-541; doi:10.1093/nar/gkh198 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Aitor Zandueta-Criado and Ralph Bock

Surprising features of plastid ndhD transcripts: addition of non-encoded nucleotides and polysome association of mRNAs with an unedited start codon
Nucl. Acids Res. 2004 32: 542-550; doi:10.1093/nar/gkh217 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Youxing Qu, Jun-tao Guo, Victor Olman, and Ying Xu

Protein structure prediction using sparse dipolar coupling data
Nucl. Acids Res. 2004 32: 551-561; doi:10.1093/nar/gkh204 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Pawel Gajer, Michael Schatz, and Steven L. Salzberg

Automated correction of genome sequence errors
Nucl. Acids Res. 2004 32: 562-569; doi:10.1093/nar/gkh216 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Patricia Auffret van der Kemp, Jean-Baptiste Charbonnier, Marc Audebert, and Serge Boiteux

Catalytic and DNA-binding properties of the human Ogg1 DNA N-glycosylase/AP lyase: biochemical exploration of H270, Q315 and F319, three amino acids of the 8-oxoguanine-binding pocket
Nucl. Acids Res. 2004 32: 570-578; doi:10.1093/nar/gkh224 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material]  

Get checked abstract A. J. Ruiz-Chica, M. A. Medina, F. Sánchez-Jiménez, and F. J. Ramírez

On the interpretation of Raman spectra of 1-aminooxy-spermine/DNA complexes
Nucl. Acids Res. 2004 32: 579-589; doi:10.1093/nar/gkh232 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material]  

Get checked abstract Masayuki Sekimata and Yoshimi Homma

Sequence-specific transcriptional repression by an MBD2-interacting zinc finger protein MIZF
Nucl. Acids Res. 2004 32: 590-597; doi:10.1093/nar/gkh249 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Yan Ling, Umesh T. Sankpal, Andrea K. Robertson, James G. McNally, Tatiana Karpova, and Keith D. Robertson

Modification of de novo DNA methyltransferase 3a (Dnmt3a) by SUMO-1 modulates its interaction with histone deacetylases (HDACs) and its capacity to repress transcription
Nucl. Acids Res. 2004 32: 598-610; doi:10.1093/nar/gkh195 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Takao Fukuda, Megumi Ashizuka, Takanori Nakamura, Kotaro Shibahara, Katsumasa Maeda, Hiroto Izumi, Kimitoshi Kohno, Michihiko Kuwano, and Takeshi Uchiumi

Characterization of the 5'-untranslated region of YB-1 mRNA and autoregulation of translation by YB-1 protein
Nucl. Acids Res. 2004 32: 611-622; doi:10.1093/nar/gkh223 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Richard T. Pon and Shuyuan Yu

Linker phosphoramidite reagents for the attachment of the first nucleoside to underivatized solid-phase supports
Nucl. Acids Res. 2004 32: 623-631; doi:10.1093/nar/gkh222 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material]  

Get checked abstract Ina V. Martin and Stuart A. MacNeill

Functional analysis of subcellular localization and protein–protein interaction sequences in the essential DNA ligase I protein of fission yeast
Nucl. Acids Res. 2004 32: 632-642; doi:10.1093/nar/gkh199 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Kadir Turan, Masaki Mibayashi, Kenji Sugiyama, Shoko Saito, Akiko Numajiri, and Kyosuke Nagata

Nuclear MxA proteins form a complex with influenza virus NP and inhibit the transcription of the engineered influenza virus genome
Nucl. Acids Res. 2004 32: 643-652; doi:10.1093/nar/gkh192 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Jennifer H. Eastberg, John Pelletier, and Barry L. Stoddard

Recognition of DNA substrates by T4 bacteriophage polynucleotide kinase
Nucl. Acids Res. 2004 32: 653-660; doi:10.1093/nar/gkh212 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Victor M. Miller, Cynthia M. Gouvion, Beverly L. Davidson, and Henry L. Paulson

Targeting Alzheimer’s disease genes with RNA interference: an efficient strategy for silencing mutant alleles
Nucl. Acids Res. 2004 32: 661-668; doi:10.1093/nar/gkh208 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Silke Süsse, Claus-Jürgen Scholz, Alexander Bürkle, and Lisa Wiesmüller

Poly(ADP-ribose) polymerase (PARP-1) and p53 independently function in regulating double-strand break repair in primate cells
Nucl. Acids Res. 2004 32: 669-680; doi:10.1093/nar/gkh227 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Inhan Lee, Alan A. Dombkowski, and Brian D. Athey

Guidelines for incorporating non-perfectly matched oligonucleotides into target-specific hybridization probes for a DNA microarray
Nucl. Acids Res. 2004 32: 681-690; doi:10.1093/nar/gkh196 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material]  

Get checked abstract Koichi Yoshinari, Makoto Miyagishi, and Kazunari Taira

Effects on RNAi of the tight structure, sequence and position of the targeted region
Nucl. Acids Res. 2004 32: 691-699; doi:10.1093/nar/gkh221 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Bernd Schimanski, Gabriele Laufer, Lilia Gontcharova, and Arthur Günzl

The Trypanosoma brucei spliced leader RNA and rRNA gene promoters have interchangeable TbSNAP50-binding elements
Nucl. Acids Res. 2004 32: 700-709; doi:10.1093/nar/gkh231 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Johannes Winkler, Ernst Urban, Doris Losert, Volker Wacheck, Hubert Pehamberger, and Christian R. Noe

A novel concept for ligand attachment to oligonucleotides via a 2'-succinyl linker
Nucl. Acids Res. 2004 32: 710-718; doi:10.1093/nar/gkh229 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Jianming Liu, Eveline Shue, Karla L. Ewalt, and Paul Schimmel

A new -interferon-inducible promoter and splice variants of an anti-angiogenic human tRNA synthetase
Nucl. Acids Res. 2004 32: 719-727; doi:10.1093/nar/gkh240 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract A. Michael Sismour, Stefan Lutz, Jeong-Ho Park, Michael J. Lutz, Paul L. Boyer, Stephen H. Hughes, and Steven A. Benner

PCR amplification of DNA containing non-standard base pairs by variants of reverse transcriptase from Human Immunodeficiency Virus-1
Nucl. Acids Res. 2004 32: 728-735; doi:10.1093/nar/gkh241 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Masaru Ueno, Tadashi Murase, Tatsuya Kibe, Noriyuki Ohashi, Kazunori Tomita, Yota Murakami, Masahiro Uritani, Takashi Ushimaru, and Masahiko Harata

Fission yeast Arp6 is required for telomere silencing, but functions independently of Swi6
Nucl. Acids Res. 2004 32: 736-741; doi:10.1093/nar/gkh234 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Coral del Val, Alexander Mehrle, Mechthild Falkenhahn, Markus Seiler, Karl-Heinz Glatting, Annemarie Poustka, Sandor Suhai, and Stefan Wiemann

High-throughput protein analysis integrating bioinformatics and experimental assays
Nucl. Acids Res. 2004 32: 742-748; doi:10.1093/nar/gkh257 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Yukiko Okuno, Peter J. Hahn, and David M. Gilbert

Structure of a palindromic amplicon junction implicates microhomology-mediated end joining as a mechanism of sister chromatid fusion during gene amplification
Nucl. Acids Res. 2004 32: 749-756; doi:10.1093/nar/gkh244 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Ana Carrillo, Yolanda Monreal, Pablo Ramírez, Luis Marin, Pascual Parrilla, Francisco Javier Oliver, and José Yélamos

Transcription regulation of TNF--early response genes by poly(ADP-ribose) polymerase-1 in murine heart endothelial cells
Nucl. Acids Res. 2004 32: 757-766; doi:10.1093/nar/gkh239 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Xiang Wang, Jun Guan, Baocheng Hu, Robert S. Weiss, George Iliakis, and Ya Wang

Involvement of Hus1 in the chain elongation step of DNA replication after exposure to camptothecin or ionizing radiation
Nucl. Acids Res. 2004 32: 767-775; doi:10.1093/nar/gkh243 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Irmtraud M. Meyer and Richard Durbin

Gene structure conservation aids similarity based gene prediction
Nucl. Acids Res. 2004 32: 776-783; doi:10.1093/nar/gkh211 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Ewan P. Plant, Pinger Wang, Jonathan L. Jacobs, and Jonathan D. Dinman

A programmed –1 ribosomal frameshift signal can function as a cis-acting mRNA destabilizing element
Nucl. Acids Res. 2004 32: 784-790; doi:10.1093/nar/gkh256 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Stefan Günther, Michal Mielcarek, Marcus Krüger, and Thomas Braun

VITO-1 is an essential cofactor of TEF1-dependent muscle-specific gene regulation
Nucl. Acids Res. 2004 32: 791-802; doi:10.1093/nar/gkh248 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Elena V. Sheveleva and Richard B. Hallick

Recent horizontal intron transfer to a chloroplast genome
Nucl. Acids Res. 2004 32: 803-810; doi:10.1093/nar/gkh225 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Anthony J. Robertson, Jason T. Howard, Zbigniew Dominski, Bradley J. Schnackenberg, Jan L. Sumerel, John J. McCarthy, James A. Coffman, and William F. Marzluff

The sea urchin stem–loop-binding protein: a maternally expressed protein that probably functions in expression of multiple classes of histone mRNA
Nucl. Acids Res. 2004 32: 811-818; doi:10.1093/nar/gkh193 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Marcel Ooms, Koen Verhoef, Edwin Southern, Hendrik Huthoff, and Ben Berkhout

Probing alternative foldings of the HIV-1 leader RNA by antisense oligonucleotide scanning arrays
Nucl. Acids Res. 2004 32: 819-827; doi:10.1093/nar/gkh206 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Thazha P. Prakash, Joseph F. Johnston, Mark J. Graham, Thomas P. Condon, and Muthiah Manoharan

2'-O-[2-[(N,N-dimethylamino)oxy]ethyl]-modified oligonucleotides inhibit expression of mRNA in vitro and in vivo
Nucl. Acids Res. 2004 32: 828-833; doi:10.1093/nar/gkh220 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Barbara Kedzierska, David J. Lee, Grzegorz Wegrzyn, Stephen J. W. Busby, and Mark S. Thomas

Role of the RNA polymerase subunits in CII-dependent activation of the bacteriophage p_E promoter: identification of important residues and positioning of the C-terminal domains
Nucl. Acids Res. 2004 32: 834-841; doi:10.1093/nar/gkh230 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Annette Kamionka, Joanna Bogdanska-Urbaniak, Oliver Scholz, and Wolfgang Hillen

Two mutations in the tetracycline repressor change the inducer anhydrotetracycline to a corepressor
Nucl. Acids Res. 2004 32: 842-847; doi:10.1093/nar/gkh200 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Jeffrey S. McKinney, Haifeng Zhang, Tomoko Kubori, Jorge E. Galán, and Sidney Altman

Disruption of type III secretion in Salmonella enterica serovar Typhimurium by external guide sequences
Nucl. Acids Res. 2004 32: 848-854; doi:10.1093/nar/gkh219 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Kouji Hirota, Tomoko Hasemi, Takatomi Yamada, Ken-ich Mizuno, Charles S. Hoffman, Takehiko Shibata, and Kunihiro Ohta

Fission yeast global repressors regulate the specificity of chromatin alteration in response to distinct environmental stresses
Nucl. Acids Res. 2004 32: 855-862; doi:10.1093/nar/gkh251 [Abstract] [FREE Full Text] [Print PDF]  

NAR Methods Online

Get checked abstract Hong Xie, Yuan Hong Yu, Pei-Lin Mao, and Zhiqiang Gao

Highly sensitive amperometric detection of genomic DNA in animal tissues
Nucl. Acids Res. 2004 32: e15; doi:10.1093/nar/gnh016 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Doris Seichter, Stefan Krebs, and Martin Förster

Rapid and accurate characterisation of short tandem repeats by MALDI-TOF analysis of endonuclease cleaved RNA transcripts
Nucl. Acids Res. 2004 32: e16; doi:10.1093/nar/gnh017 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Weilin Wu, Emily Hodges, Jenny Redelius, and Christer Höög

A novel approach for evaluating the efficiency of siRNAs on protein levels in cultured cells
Nucl. Acids Res. 2004 32: e17; doi:10.1093/nar/gnh010 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract James H. Watterson, Sandeep Raha, Christopher C. Kotoris, Christopher C. Wust, Farhad Gharabaghi, Sarah C. Jantzi, Nicole K. Haynes, Nathalie H. Gendron, Ulrich J. Krull, Alex E. Mackenzie, and Paul A. E. Piunno

Rapid detection of single nucleotide polymorphisms associated with spinal muscular atrophy by use of a reusable fibre-optic biosensor
Nucl. Acids Res. 2004 32: e18; doi:10.1093/nar/gnh013 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Nikolai A. Shevchuk, Anton V. Bryksin, Yevgeniya A. Nusinovich, Felipe C. Cabello, Margaret Sutherland, and Stephan Ladisch

Construction of long DNA molecules using long PCR-based fusion of several fragments simultaneously
Nucl. Acids Res. 2004 32: e19; doi:10.1093/nar/gnh014 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material]  

Get checked abstract A. Macanovic, C. Marquette, C. Polychronakos, and M. F. Lawrence

Impedance-based detection of DNA sequences using a silicon transducer with PNA as the probe layer
Nucl. Acids Res. 2004 32: e20; doi:10.1093/nar/gnh003 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Matthew J. Callow, Snezana Drmanac, and Radoje Drmanac

Selective DNA amplification from complex genomes using universal double-sided adapters
Nucl. Acids Res. 2004 32: e21; doi:10.1093/nar/gnh019 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract M. B. Hale, G. P. Nolan, and R. Wolkowicz

Oligonucleotide-directed site-specific integration of high complexity libraries into ssDNA templates
Nucl. Acids Res. 2004 32: e22; doi:10.1093/nar/gnh021 [Abstract] [FREE Full Text] [Print PDF]  

Get checked abstract Gudmundur H. Gunnarsson, Hans G. Thormar, Bjarki Gudmundsson, Lina Akesson, and Jon J. Jonsson

Two-dimensional conformation-dependent electrophoresis (2D-CDE) to separate DNA fragments containing unmatched bulge from complex DNA samples
Nucl. Acids Res. 2004 32: e23; doi:10.1093/nar/gnh018 [Abstract] [FREE Full Text] [Print PDF]  

Corrigendum

Corrigendum
Nucl. Acids Res. 2004 32: 863-864; doi:10.1093/nar/gkh245 [Extract] [FREE Full Text] [Print PDF]  

Corrigendum
Nucl. Acids Res. 2004 32: 865; doi:10.1093/nar/gkh270 [Extract] [FREE Full Text] [Print PDF]  

To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.