Nucleic Acids Research

Articles:

Gang Shen, Maria Francis G. Anand, and Rastislav Levicky

X-ray photoelectron spectroscopy and infrared spectroscopy study of maleimide-activated supports for immobilization of oligodeoxyribonucleotides
Nucl. Acids Res. 2004 32: 5973-5980; doi:10.1093/nar/gkh932 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Zhongwen Xie, Shuqian Liu, Yanbin Zhang, and Zhigang Wang

Roles of Rad23 protein in yeast nucleotide excision repair
Nucl. Acids Res. 2004 32: 5981-5990; doi:10.1093/nar/gkh934 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Allison H. S. Hall, Jing Wan, Erin E. Shaughnessy, Barbara Ramsay Shaw, and Kenneth A. Alexander

RNA interference using boranophosphate siRNAs: structure–activity relationships
Nucl. Acids Res. 2004 32: 5991-6000; doi:10.1093/nar/gkh936 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Rafal Tomecki, Aleksandra Dmochowska, Kamil Gewartowski, Andrzej Dziembowski, and Piotr P. Stepien

Identification of a novel human nuclear-encoded mitochondrial poly(A) polymerase
Nucl. Acids Res. 2004 32: 6001-6014; doi:10.1093/nar/gkh923 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Katharina Maniura-Weber, Steffi Goffart, Heike L. Garstka, Julio Montoya, and Rudolf J. Wiesner

Transient overexpression of mitochondrial transcription factor A (TFAM) is sufficient to stimulate mitochondrial DNA transcription, but not sufficient to increase mtDNA copy number in cultured cells
Nucl. Acids Res. 2004 32: 6015-6027; doi:10.1093/nar/gkh921 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Nongmaithem Sadananda Singh and Umesh Varshney

A physiological connection between tmRNA and peptidyl-tRNA hydrolase functions in Escherichia coli
Nucl. Acids Res. 2004 32: 6028-6037; doi:10.1093/nar/gkh924 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

G. Glöckner, R. Lehmann, A. Romualdi, S. Pradella, U. Schulte-Spechtel, M. Schilhabel, B. Wilske, J. Sühnel, and M. Platzer

Comparative analysis of the Borrelia garinii genome
Nucl. Acids Res. 2004 32: 6038-6046; doi:10.1093/nar/gkh953 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Prabal K. Maiti, Tod A. Pascal, Nagarajan Vaidehi, and William A. Goddard, III

The stability of Seeman JX DNA topoisomers of paranemic crossover (PX) molecules as a function of crossover number
Nucl. Acids Res. 2004 32: 6047-6056; doi:10.1093/nar/gkh931 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kwang-sun Kim and Younghoon Lee

Regulation of 6S RNA biogenesis by switching utilization of both sigma factors and endoribonucleases
Nucl. Acids Res. 2004 32: 6057-6068; doi:10.1093/nar/gkh939 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Toshiko Matsumoto, Wataru Yukawa, Yasuyuki Nozaki, Ryo Nakashige, Minori Shinya, Satoshi Makino, Masaru Yagura, Tomoki Ikuta, Tadashi Imanishi, Hidetoshi Inoko, Gen Tamiya, and Takashi Gojobori

Novel algorithm for automated genotyping of microsatellites
Nucl. Acids Res. 2004 32: 6069-6077; doi:10.1093/nar/gkh946 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jesper J. Sørensen, Jakob T. Nielsen, and Michael Petersen

Solution structure of a dsDNA:LNA triplex
Nucl. Acids Res. 2004 32: 6078-6085; doi:10.1093/nar/gkh942 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Brian Sauer and Jeffrey McDermott

DNA recombination with a heterospecific Cre homolog identified from comparison of the pac-c1 regions of P1-related phages
Nucl. Acids Res. 2004 32: 6086-6095; doi:10.1093/nar/gkh941 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Konstantinos Boulias and Iannis Talianidis

Functional role of G9a-induced histone methylation in small heterodimer partner-mediated transcriptional repression
Nucl. Acids Res. 2004 32: 6096-6103; doi:10.1093/nar/gkh947 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ana Paula M. Silva, Jorge E. S. De Souza, Pedro A. F. Galante, Gregory J. Riggins, Sandro J. De Souza, and Anamaria A. Camargo

The impact of SNPs on the interpretation of SAGE and MPSS experimental data
Nucl. Acids Res. 2004 32: 6104-6110; doi:10.1093/nar/gkh937 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Alicia Roque, Mary Orrego, Imma Ponte, and Pedro Suau

The preferential binding of histone H1 to DNA scaffold-associated regions is determined by its C-terminal domain
Nucl. Acids Res. 2004 32: 6111-6119; doi:10.1093/nar/gkh945 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Tadashi Mori, Akihiro Oguro, Takashi Ohtsu, and Yoshikazu Nakamura

RNA aptamers selected against the receptor activator of NF-B acquire general affinity to proteins of the tumor necrosis factor receptor family
Nucl. Acids Res. 2004 32: 6120-6128; doi:10.1093/nar/gkh949 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Matheshwaran Saravanan, Janusz M. Bujnicki, Iwona A. Cymerman, Desirazu N. Rao, and Valakunja Nagaraja

Type II restriction endonuclease R.KpnI is a member of the HNH nuclease superfamily
Nucl. Acids Res. 2004 32: 6129-6135; doi:10.1093/nar/gkh951 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Hélène D'Anjou, Catherine Chabot, and Pierre Chartrand

Preferential accessibility to specific genomic loci for the repair of double-strand breaks in human cells
Nucl. Acids Res. 2004 32: 6136-6143; doi:10.1093/nar/gkh952 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Alberto Pérez, Agnes Noy, Filip Lankas, F. Javier Luque, and Modesto Orozco

The relative flexibility of B-DNA and A-RNA duplexes: database analysis
Nucl. Acids Res. 2004 32: 6144-6151; doi:10.1093/nar/gkh954 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Corrigenda:

Junko Wakai, Atsuko Takagi, Masato Nakayama, Takahito Miya, Takatoshi Miyahara, Tsuyoshi Iwanaga, Shigeori Takenaka, Yasuyuki Ikeda, and Masahiko Amano

A novel method of identifying genetic mutations using an electrochemical DNA array
Nucl. Acids Res. 2004 32: 6152; doi:10.1093/nar/gkh940 [Extract] [FREE Full Text] [Print PDF] [Request Permissions]  

Eriks Rozners and Janelle Moulder

Hydration of short DNA, RNA, and 2'-OMe oligonucleotides determined by osmotic stressing
Nucl. Acids Res. 2004 32: 6153; doi:10.1093/nar/gkh955 [Extract] [FREE Full Text] [Print PDF] [Request Permissions]  

Methods Online:

Fredrik Johansson, Anne Lagerqvist, Klaus Erixon, and Dag Jenssen

A method to monitor replication fork progression in mammalian cells: nucleotide excision repair enhances and homologous recombination delays elongation along damaged DNA
Nucl. Acids Res. 2004 32: e157; doi:10.1093/nar/gnh154 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jorge Yáñez, Martha Argüello, Joel Osuna, Xavier Soberón, and Paul Gaytán

Combinatorial codon-based amino acid substitutions
Nucl. Acids Res. 2004 32: e158; doi:10.1093/nar/gnh156 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Bruno Pitard, Mahajoub Bello-Roufaï, Olivier Lambert, Peggy Richard, Léa Desigaux, Sarah Fernandes, Caroline Lanctin, Hélène Pollard, Mehdi Zeghal, Pierre-Yves Rescan, and Denis Escande

Negatively charged self-assembling DNA/poloxamine nanospheres for in vivo gene transfer
Nucl. Acids Res. 2004 32: e159; doi:10.1093/nar/gnh153 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jonathan L. Jacobs and Jonathan D. Dinman

Systematic analysis of bicistronic reporter assay data
Nucl. Acids Res. 2004 32: e160; doi:10.1093/nar/gnh157 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

You-Tzung Chen, Regis Levasseur, Sukeshi Vaishnav, Gerard Karsenty, and Allan Bradley

Bigenic Cre/loxP, putk conditional genetic ablation
Nucl. Acids Res. 2004 32: e161; doi:10.1093/nar/gnh158 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Peter A. Carr, Jason S. Park, Yoon-Jae Lee, Tiffany Yu, Shuguang Zhang, and Joseph M. Jacobson

Protein-mediated error correction for de novo DNA synthesis
Nucl. Acids Res. 2004 32: e162; doi:10.1093/nar/gnh160 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Ronan Quéré, Laurent Manchon, Mireille Lejeune, Oliver Clément, Fabien Pierrat, Béatrice Bonafoux, Thérèse Commes, David Piquemal, and Jacques Marti

Mining SAGE data allows large-scale, sensitive screening of antisense transcript expression
Nucl. Acids Res. 2004 32: e163; doi:10.1093/nar/gnh161 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Gabrielle S. Sellick, Cheryl Longman, John Tolmie, Ruth Newbury-Ecob, Lynn Geenhalgh, Simon Hughes, Margo Whiteford, Christine Garrett, and Richard S. Houlston

Genomewide linkage searches for Mendelian disease loci can be efficiently conducted using high-density SNP genotyping arrays
Nucl. Acids Res. 2004 32: e164; doi:10.1093/nar/gnh163 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Graham Dellaire, Rozalia Nisman, Christopher H. Eskiw, and David P. Bazett-Jones

In situ imaging and isolation of proteins using dsDNA oligonucleotides
Nucl. Acids Res. 2004 32: e165; doi:10.1093/nar/gnh164 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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