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Previous Next 		Contents: Volume 32, Number 3, 2004   [Index by Author] 

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Survey and Summary Back

Xiang-Jiao Yang
The diverse superfamily of lysine acetyltransferases and their roles in leukemia and other diseases
Nucl. Acids Res. 2004 32: 959-976; doi:10.1093/nar/gkh252 [Abstract] [FREE Full Text] [Print PDF]  

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Xiaoming Li, Nathan Fischel-Ghodsian, Faina Schwartz, Qingfeng Yan, Rick A. Friedman, and Min-Xin Guan
Biochemical characterization of the mitochondrial tRNASer(UCN) T7511C mutation associated with nonsyndromic deafness
Nucl. Acids Res. 2004 32: 867-877; doi:10.1093/nar/gkh226 [Abstract] [FREE Full Text] [Print PDF]  

Daniel Coman and Irina M. Russu
Site-resolved stabilization of a DNA triple helix by magnesium ions
Nucl. Acids Res. 2004 32: 878-883; doi:10.1093/nar/gkh228 [Abstract] [FREE Full Text] [Print PDF]  

Qing-Ping Zhou, Trung Ngoc Le, Xiangguo Qiu, Virginia Spencer, Jimmy de Melo, Guoyan Du, Margot Plews, Mario Fonseca, Jian Min Sun, James R. Davie, and David D. Eisenstat
Identification of a direct Dlx homeodomain target in the developing mouse forebrain and retina by optimization of chromatin immunoprecipitation
Nucl. Acids Res. 2004 32: 884-892; doi:10.1093/nar/gkh233 [Abstract] [FREE Full Text] [Print PDF]  

Andrew C. Hsieh, Ronghai Bo, Judith Manola, Francisca Vazquez, Olivia Bare, Anastasia Khvorova, Stephen Scaringe, and William R. Sellers
A library of siRNA duplexes targeting the phosphoinositide 3-kinase pathway: determinants of gene silencing for use in cell-based screens
Nucl. Acids Res. 2004 32: 893-901; doi:10.1093/nar/gkh238 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material]  

Olivia Novac, Anne-Sophie Guenier, and Jerry Pelletier
Inhibitors of protein synthesis identified by a high throughput multiplexed translation screen
Nucl. Acids Res. 2004 32: 902-915; doi:10.1093/nar/gkh235 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material]  

Maria Bonaccio, Alfredo Credali, and Alessio Peracchi
Kinetic and thermodynamic characterization of the RNA-cleaving 8-17 deoxyribozyme
Nucl. Acids Res. 2004 32: 916-925; doi:10.1093/nar/gkh250 [Abstract] [FREE Full Text] [Print PDF]  

Vladimir V. Koval, Nikita A. Kuznetsov, Dmitry O. Zharkov, Alexander A. Ishchenko, Kenneth T. Douglas, Georgy A. Nevinsky, and Olga S. Fedorova
Pre-steady-state kinetics shows differences in processing of various DNA lesions by Escherichia coli formamidopyrimidine-DNA glycosylase
Nucl. Acids Res. 2004 32: 926-935; doi:10.1093/nar/gkh237 [Abstract] [FREE Full Text] [Print PDF]  

Kumiko Ui-Tei, Yuki Naito, Fumitaka Takahashi, Takeshi Haraguchi, Hiroko Ohki-Hamazaki, Aya Juni, Ryu Ueda, and Kaoru Saigo
Guidelines for the selection of highly effective siRNA sequences for mammalian and chick RNA interference
Nucl. Acids Res. 2004 32: 936-948; doi:10.1093/nar/gkh247 [Abstract] [FREE Full Text] [Print PDF]  

Leonardo Mariño-Ramírez, John L. Spouge, Gavin C. Kanga, and David Landsman
Statistical analysis of over-represented words in human promoter sequences
Nucl. Acids Res. 2004 32: 949-958; doi:10.1093/nar/gkh246 [Abstract] [FREE Full Text] [Print PDF]  

David A. Rasko, Jacques Ravel, Ole Andreas Økstad, Erlendur Helgason, Regina Z. Cer, Lingxia Jiang, Kelly A. Shores, Derrick E. Fouts, Nicolas J. Tourasse, Samuel V. Angiuoli, James Kolonay, William C. Nelson, Anne-Brit Kolstø, Claire M. Fraser, and Timothy D. Read
The genome sequence of Bacillus cereus ATCC 10987 reveals metabolic adaptations and a large plasmid related to Bacillus anthracis pXO1
Nucl. Acids Res. 2004 32: 977-988; doi:10.1093/nar/gkh258 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material]  

A. M. Polyanichko, V. V. Andrushchenko, E. V. Chikhirzhina, V. I. Vorob’ev, and H. Wieser
The effect of manganese(II) on DNA structure: electronic and vibrational circular dichroism studies
Nucl. Acids Res. 2004 32: 989-996; doi:10.1093/nar/gkh242 [Abstract] [FREE Full Text] [Print PDF]  

Wesley D. Block, Yaping Yu, and Susan P. Lees-Miller
Phosphatidyl inositol 3-kinase-like serine/threonine protein kinases (PIKKs) are required for DNA damage-induced phosphorylation of the 32 kDa subunit of replication protein A at threonine 21
Nucl. Acids Res. 2004 32: 997-1005; doi:10.1093/nar/gkh265 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material]  

Maria Elena Regonesi, Federica Briani, Andrea Ghetta, Sandro Zangrossi, Daniela Ghisotti, Paolo Tortora, and Gianni Dehò
A mutation in polynucleotide phosphorylase from Escherichia coli impairing RNA binding and degradosome stability
Nucl. Acids Res. 2004 32: 1006-1017; doi:10.1093/nar/gkh268 [Abstract] [FREE Full Text] [Print PDF]  

U. Varshney, V. Ramesh, A. Madabushi, R. Gaur, H. S. Subramanya, and U. L. RajBhandary
Mycobacterium tuberculosis Rv2118c codes for a single-component homotetrameric m1A58 tRNA methyltransferase
Nucl. Acids Res. 2004 32: 1018-1027; doi:10.1093/nar/gkh207 [Abstract] [FREE Full Text] [Print PDF]  

Eiko Saijou, Toshinobu Fujiwara, Toshinobu Suzaki, Kunio Inoue, and Hiroshi Sakamoto
RBD-1, a nucleolar RNA-binding protein, is essential for Caenorhabditis elegans early development through 18S ribosomal RNA processing
Nucl. Acids Res. 2004 32: 1028-1036; doi:10.1093/nar/gkh264 [Abstract] [FREE Full Text] [Print PDF]  

Lilia M. Iakoucheva, Predrag Radivojac, Celeste J. Brown, Timothy R. O’Connor, Jason G. Sikes, Zoran Obradovic, and A. Keith Dunker
The importance of intrinsic disorder for protein phosphorylation
Nucl. Acids Res. 2004 32: 1037-1049; doi:10.1093/nar/gkh253 [Abstract] [FREE Full Text] [Print PDF]  

Tonje Davidsen, Einar A. Rødland, Karin Lagesen, Erling Seeberg, Torbjørn Rognes, and Tone Tønjum
Biased distribution of DNA uptake sequences towards genome maintenance genes
Nucl. Acids Res. 2004 32: 1050-1058; doi:10.1093/nar/gkh255 [Abstract] [FREE Full Text] [Print PDF]  

Joel A. Malek, Jamey M. Wierzbowski, Wei Tao, Stephanie A. Bosak, David J. Saranga, Lynn Doucette-Stamm, Douglas R. Smith, Paul J. McEwan, and Kevin J. McKernan
Protein interaction mapping on a functional shotgun sequence of Rickettsia sibirica
Nucl. Acids Res. 2004 32: 1059-1064; doi:10.1093/nar/gkh254 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material]  

Derek J. Richard, Stephen D. Bell, and Malcolm F. White
Physical and functional interaction of the archaeal single-stranded DNA-binding protein SSB with RNA polymerase
Nucl. Acids Res. 2004 32: 1065-1074; doi:10.1093/nar/gkh259 [Abstract] [FREE Full Text] [Print PDF]  

Tracey K. Prior, Daniel R. Semlow, Amber Flynn-Charlebois, Imran Rashid, and Scott K. Silverman
Structure–function correlations derived from faster variants of a RNA ligase deoxyribozyme
Nucl. Acids Res. 2004 32: 1075-1082; doi:10.1093/nar/gkh263 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material]  

Michael T. Marr, Jeffrey W. Roberts, Susan E. Brown, Matthew Klee, and Gary N. Gussin
Interactions among CII protein, RNA polymerase and the {lambda} PRE promoter: contacts between RNA polymerase and the –35 region of PRE are identical in the presence and absence of CII protein
Nucl. Acids Res. 2004 32: 1083-1090; doi:10.1093/nar/gkh261 [Abstract] [FREE Full Text] [Print PDF]  

Anne Théobald-Dietrich, Magali Frugier, Richard Giegé, and Joëlle Rudinger-Thirion
Atypical archaeal tRNA pyrrolysine transcript behaves towards EF-Tu as a typical elongator tRNA
Nucl. Acids Res. 2004 32: 1091-1096; doi:10.1093/nar/gkh266 [Abstract] [FREE Full Text] [Print PDF]  

Carmen Cáceres, Glenford Wright, Catherine Gouyette, Gary Parkinson, and Juan A. Subirana
A thymine tetrad in d(TGGGGT) quadruplexes stabilized with Tl+/Na+ ions
Nucl. Acids Res. 2004 32: 1097-1102; doi:10.1093/nar/gkh269 [Abstract] [FREE Full Text] [Print PDF]  

Daniel T. Simmons, Dahai Gai, Rebekah Parsons, Amanda Debes, and Rupa Roy
Assembly of the replication initiation complex on SV40 origin DNA
Nucl. Acids Res. 2004 32: 1103-1112; doi:10.1093/nar/gkh236 [Abstract] [FREE Full Text] [Print PDF]  

G. Franck Gbaguidi and Luis B. Agellon
The inhibition of the human cholesterol 7{alpha}-hydroxylase gene (CYP7A1) promoter by fibrates in cultured cells is mediated via the liver x receptor {alpha} and peroxisome proliferator-activated receptor {alpha} heterodimer
Nucl. Acids Res. 2004 32: 1113-1121; doi:10.1093/nar/gkh260 [Abstract] [FREE Full Text] [Print PDF]  

Dongyu Guo, Zhongwen Xie, Huiyun Shen, Bo Zhao, and Zhigang Wang
Translesion synthesis of acetylaminofluorene-dG adducts by DNA polymerase {zeta} is stimulated by yeast Rev1 protein
Nucl. Acids Res. 2004 32: 1122-1130; doi:10.1093/nar/gkh279 [Abstract] [FREE Full Text] [Print PDF]  

E. Eden and S. Brunak
Analysis and recognition of 5' UTR intron splice sites in human pre-mRNA
Nucl. Acids Res. 2004 32: 1131-1142; doi:10.1093/nar/gkh273 [Abstract] [FREE Full Text] [Print PDF]  

F. Guillonneau, A. L. Guieysse, S. Nocentini, C. Giovannangeli, and D. Praseuth
Psoralen interstrand cross-link repair is specifically altered by an adjacent triple-stranded structure
Nucl. Acids Res. 2004 32: 1143-1153; doi:10.1093/nar/gkh267 [Abstract] [FREE Full Text] [Print PDF]  

Daniel Boden, Oliver Pusch, Rebecca Silbermann, Fred Lee, Lynne Tucker, and Bharat Ramratnam
Enhanced gene silencing of HIV-1 specific siRNA using microRNA designed hairpins
Nucl. Acids Res. 2004 32: 1154-1158; doi:10.1093/nar/gkh278 [Abstract] [FREE Full Text] [Print PDF]  

Karsten Liere, Daniela Kaden, Pal Maliga, and Thomas Börner
Overexpression of phage-type RNA polymerase RpoTp in tobacco demonstrates its role in chloroplast transcription by recognizing a distinct promoter type
Nucl. Acids Res. 2004 32: 1159-1165; doi:10.1093/nar/gkh285 [Abstract] [FREE Full Text] [Print PDF]  

Wilfried J. J. Meijer and Margarita Salas
Relevance of UP elements for three strong Bacillus subtilis phage {phi}29 promoters
Nucl. Acids Res. 2004 32: 1166-1176; doi:10.1093/nar/gkh290 [Abstract] [FREE Full Text] [Print PDF]  

Jörg Leppert, Carl R. Urbinati, Sabine Häfner, Oliver Ohlenschläger, Maurice S. Swanson, Matthias Görlach, and Ramadurai Ramachandran
Identification of NH...N hydrogen bonds by magic angle spinning solid state NMR in a double-stranded RNA associated with myotonic dystrophy
Nucl. Acids Res. 2004 32: 1177-1183; doi:10.1093/nar/gkh288 [Abstract] [FREE Full Text] [Print PDF]  

Leah R. Read, Steven J. Raynard, Ania Ruksc, and Mark D. Baker
Gene repeat expansion and contraction by spontaneous intrachromosomal homologous recombination in mammalian cells
Nucl. Acids Res. 2004 32: 1184-1196; doi:10.1093/nar/gkh280 [Abstract] [FREE Full Text] [Print PDF]  

Yan Wang, Dennis E. Prosen, Li Mei, John C. Sullivan, Michael Finney, and Peter B. Vander Horn
A novel strategy to engineer DNA polymerases for enhanced processivity and improved performance in vitro
Nucl. Acids Res. 2004 32: 1197-1207; doi:10.1093/nar/gkh271 [Abstract] [FREE Full Text] [Print PDF]  

Olivier Fedrigo and Gavin Naylor
A gene-specific DNA sequencing chip for exploring molecular evolutionary change
Nucl. Acids Res. 2004 32: 1208-1213; doi:10.1093/nar/gkh210 [Abstract] [FREE Full Text] [Print PDF]  

Maria Zeniou, Renata Gattoni, André Hanauer, and James Stévenin
Delineation of the mechanisms of aberrant splicing caused by two unusual intronic mutations in the RSK2 gene involved in Coffin–Lowry syndrome
Nucl. Acids Res. 2004 32: 1214-1223; doi:10.1093/nar/gkh272 [Abstract] [FREE Full Text] [Print PDF]  

V. N. Potaman, E. A. Oussatcheva, Y. L. Lyubchenko, L. S. Shlyakhtenko, S. I. Bidichandani, T. Ashizawa, and R. R. Sinden
Length-dependent structure formation in Friedreich ataxia (GAA)n·(TTC)n repeats at neutral pH
Nucl. Acids Res. 2004 32: 1224-1231; doi:10.1093/nar/gkh274 [Abstract] [FREE Full Text] [Print PDF]  

Gopal Singh, Nicolas Charlet-B., Jin Han, and Thomas A. Cooper
ETR-3 and CELF4 protein domains required for RNA binding and splicing activity in vivo
Nucl. Acids Res. 2004 32: 1232-1241; doi:10.1093/nar/gkh275 [Abstract] [FREE Full Text] [Print PDF]  

Marc Spingola, Javier Armisen, and Manuel Ares, Jr
Mer1p is a modular splicing factor whose function depends on the conserved U2 snRNP protein Snu17p
Nucl. Acids Res. 2004 32: 1242-1250; doi:10.1093/nar/gkh281 [Abstract] [FREE Full Text] [Print PDF]  

NAR Methods Online Back

Gerhard Schwarz, Stefan Bäumler, Annette Block, Friedrich G. Felsenstein, and Gerhard Wenzel
Determination of detection and quantification limits for SNP allele frequency estimation in DNA pools using real time PCR
Nucl. Acids Res. 2004 32: e24; doi:10.1093/nar/gnh020 [Abstract] [FREE Full Text] [Print PDF]  

Bashir Mir and Jorge A. Piedrahita
Nuclear localization signal and cell synchrony enhance gene targeting efficiency in primary fetal fibroblasts
Nucl. Acids Res. 2004 32: e25; doi:10.1093/nar/gnh023 [Abstract] [FREE Full Text] [Print PDF]  

Tuck Seng Wong, Kang Lan Tee, Berhard Hauer, and Ulrich Schwaneberg
Sequence saturation mutagenesis (SeSaM): a novel method for directed evolution
Nucl. Acids Res. 2004 32: e26; doi:10.1093/nar/gnh028 [Abstract] [FREE Full Text] [Print PDF]  

Ling-Hui Li, Jian-Chiuan Li, Yung-Feng Lin, Chung-Yen Lin, Chung-Yung Chen, and Shih-Feng Tsai
Genomic shotgun array: a procedure linking large-scale DNA sequencing with regional transcript mapping
Nucl. Acids Res. 2004 32: e27; doi:10.1093/nar/gnh025 [Abstract] [FREE Full Text] [Print PDF]  

Yan Xiao and Peter E. Barker
Semiconductor nanocrystal probes for human metaphase chromosomes
Nucl. Acids Res. 2004 32: e28; doi:10.1093/nar/gnh024 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material]  

Rainer König, Danila Baldessari, Nicolas Pollet, Christof Niehrs, and Roland Eils
Reliability of gene expression ratios for cDNA microarrays in multiconditional experiments with a reference design
Nucl. Acids Res. 2004 32: e29; doi:10.1093/nar/gnh027 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material]  

Florian Kühnel, Corinna Fritsch, Sabine Krause, Bettina Mundt, Thomas Wirth, Yasmin Paul, Nisar Peter Malek, Lars Zender, Michael Peter Manns, and Stefan Kubicka
Doxycyline regulation in a single retroviral vector by an autoregulatory loop facilitates controlled gene expression in liver cells
Nucl. Acids Res. 2004 32: e30; doi:10.1093/nar/gnh034 [Abstract] [FREE Full Text] [Print PDF]  

Konstantin Khodosevich, Yuri Lebedev, and Eugene D. Sverdlov
Large-scale determination of the methylation status of retrotransposons in different tissues using a methylation tags approach
Nucl. Acids Res. 2004 32: e31; doi:10.1093/nar/gnh035 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material]  

Daniel A. Di Giusto and Garry C. King
Strong positional preference in the interaction of LNA oligonucleotides with DNA polymerase and proofreading exonuclease activities: implications for genotyping assays
Nucl. Acids Res. 2004 32: e32; doi:10.1093/nar/gnh036 [Abstract] [FREE Full Text] [Print PDF]  

Fu-Hsiung Chang, Chien-Hsin Lee, Ming-Ta Chen, Chun-Chen Kuo, Yi-Lin Chiang, Chi-Ying Hang, and Steve Roffler
Surfection: a new platform for transfected cell arrays
Nucl. Acids Res. 2004 32: e33; doi:10.1093/nar/gnh029 [Abstract] [FREE Full Text] [Print PDF]  

Trond Hellem Bø, Bjarte Dysvik, and Inge Jonassen
LSimpute: accurate estimation of missing values in microarray data with least squares methods
Nucl. Acids Res. 2004 32: e34; doi:10.1093/nar/gnh026 [Abstract] [FREE Full Text] [Print PDF]  

Jonathan M. Keith, Duncan A. E. Cochran, Gita H. Lala, Peter Adams, Darryn Bryant, and Keith R. Mitchelson
Unlocking hidden genomic sequence
Nucl. Acids Res. 2004 32: e35; doi:10.1093/nar/gnh022 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material]  

Jeffrey S. Swers, Brenda A. Kellogg, and K. Dane Wittrup
Shuffled antibody libraries created by in vivo homologous recombination and yeast surface display
Nucl. Acids Res. 2004 32: e36; doi:10.1093/nar/gnh030 [Abstract] [FREE Full Text] [Print PDF]  

Pavel A. Zhulidov, Ekaterina A. Bogdanova, Alex S. Shcheglov, Laura L. Vagner, George L. Khaspekov, Valery B. Kozhemyako, Mikhail V. Matz, Ella Meleshkevitch, Leonid L. Moroz, Sergey A. Lukyanov, and Dmitry A. Shagin
Simple cDNA normalization using kamchatka crab duplex-specific nuclease
Nucl. Acids Res. 2004 32: e37; doi:10.1093/nar/gnh031 [Abstract] [FREE Full Text] [Print PDF]  

Allen S. Yang, Marcos R. H. Estécio, Ketan Doshi, Yutaka Kondo, Eloiza H. Tajara, and Jean-Pierre J. Issa
A simple method for estimating global DNA methylation using bisulfite PCR of repetitive DNA elements
Nucl. Acids Res. 2004 32: e38; doi:10.1093/nar/gnh032 [Abstract] [FREE Full Text] [Print PDF]  

Agnieszka Wichlacz, Michal Legiewicz, and Jerzy Ciesiolka
Generating in vitro transcripts with homogenous 3' ends using trans-acting antigenomic delta ribozyme
Nucl. Acids Res. 2004 32: e39; doi:10.1093/nar/gnh037 [Abstract] [FREE Full Text] [Print PDF]  

To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.