Nucleic Acids Research

Articles:

J. A. Ferreiro, N. G. Powell, N. Karabetsou, N. A. Kent, J. Mellor, and R. Waters

Cbf1p modulates chromatin structure, transcription and repair at the Saccharomyces cerevisiae MET16 locus
Nucl. Acids Res. 2004 32: 1617-1626; doi:10.1093/nar/gkh324 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Rieko Ohki and Fuyuki Ishikawa

Telomere-bound TRF1 and TRF2 stall the replication fork at telomeric repeats
Nucl. Acids Res. 2004 32: 1627-1637; doi:10.1093/nar/gkh309 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Nicolas Carrasco, Yuri Buzin, Elizabeth Tyson, Elizer Halpert, and Zhen Huang

Selenium derivatization and crystallization of DNA and RNA oligonucleotides for X-ray crystallography using multiple anomalous dispersion
Nucl. Acids Res. 2004 32: 1638-1646; doi:10.1093/nar/gkh325 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Hideko Urushihara, Takahiro Morio, Tamao Saito, Yuji Kohara, Eiko Koriki, Hiroshi Ochiai, Mineko Maeda, Jeffrey G. Williams, Ikuo Takeuchi, and Yoshimasa Tanaka

Analyses of cDNAs from growth and slug stages of Dictyostelium discoideum
Nucl. Acids Res. 2004 32: 1647-1653; doi:10.1093/nar/gkh262 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Kalipso Halkidou, Ian R. Logan, Susan Cook, David E. Neal, and Craig N. Robson

Putative involvement of the histone acetyltransferase Tip60 in ribosomal gene transcription
Nucl. Acids Res. 2004 32: 1654-1665; doi:10.1093/nar/gkh296 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Bohdan Schneider, Zdenek Morávek, and Helen M. Berman

RNA conformational classes
Nucl. Acids Res. 2004 32: 1666-1677; doi:10.1093/nar/gkh333 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Partho Sarothi Ray and Saumitra Das

Inhibition of hepatitis C virus IRES-mediated translation by small RNAs analogous to stem–loop structures of the 5'-untranslated region
Nucl. Acids Res. 2004 32: 1678-1687; doi:10.1093/nar/gkh328 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jia-Fu Wang, Hui Zhou, Yue-Qin Chen, Qing-Jun Luo, and Liang-Hu Qu

Identification of 20 microRNAs from Oryza sativa
Nucl. Acids Res. 2004 32: 1688-1695; doi:10.1093/nar/gkh332 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Bharesh K. Chauhan, Ying Yang, Kveta Cveklová, and Ales Cvekl

Functional interactions between alternatively spliced forms of Pax6 in crystallin gene regulation and in haploinsufficiency
Nucl. Acids Res. 2004 32: 1696-1709; doi:10.1093/nar/gkh334 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Akiko Kozaki, Sarah Hake, and Joseph Colasanti

The maize ID1 flowering time regulator is a zinc finger protein with novel DNA binding properties
Nucl. Acids Res. 2004 32: 1710-1720; doi:10.1093/nar/gkh337 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Frank Meulewaeter, Rosalinde van Lipzig, Alexander P. Gultyaev, Cornelis W. A. Pleij, Daniel Van Damme, Marc Cornelissen, and Gerben van Eldik

Conservation of RNA structures enables TNV and BYDV 5' and 3' elements to cooperate synergistically in cap-independent translation
Nucl. Acids Res. 2004 32: 1721-1730; doi:10.1093/nar/gkh338 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Fyodor A. Kondrashov, Aleksey Y. Ogurtsov, and Alexey S. Kondrashov

Bioinformatical assay of human gene morbidity
Nucl. Acids Res. 2004 32: 1731-1737; doi:10.1093/nar/gkh330 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kohei Takasawa, Chikahide Masutani, Fumio Hanaoka, and Shigenori Iwai

Chemical synthesis and translesion replication of a cis–syn cyclobutane thymine–uracil dimer
Nucl. Acids Res. 2004 32: 1738-1745; doi:10.1093/nar/gkh342 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Andres Ramos, Andrew N. Lane, David Hollingworth, and Teresa W.-M. Fan

Secondary structure and stability of the selenocysteine insertion sequences (SECIS) for human thioredoxin reductase and glutathione peroxidase
Nucl. Acids Res. 2004 32: 1746-1755; doi:10.1093/nar/gkh331 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Alicia Ferguson, Ryan M. Boomer, Markus Kurz, Sara C. Keene, John L. Diener, Anthony D. Keefe, Charles Wilson, and Sharon T. Cload

A novel strategy for selection of allosteric ribozymes yields RiboReporter^TM sensors for caffeine and aspartame
Nucl. Acids Res. 2004 32: 1756-1766; doi:10.1093/nar/gkh336 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Namiko Suda, Yasutomo Ito, Tsuneo Imai, Toyone Kikumori, Akihiko Kikuchi, Yukihiro Nishiyama, Shonen Yoshida, and Motoshi Suzuki

The 4 residues of human DNA topoisomerase II function in enzymatic activity and anticancer drug sensitivity
Nucl. Acids Res. 2004 32: 1767-1773; doi:10.1093/nar/gkh339 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Svetlana A. Shabalina, Aleksey Y. Ogurtsov, Igor B. Rogozin, Eugene V. Koonin, and David J. Lipman

Comparative analysis of orthologous eukaryotic mRNAs: potential hidden functional signals
Nucl. Acids Res. 2004 32: 1774-1782; doi:10.1093/nar/gkh313 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Manuela Sironi, Giorgia Menozzi, Laura Riva, Rachele Cagliani, Giacomo P. Comi, Nereo Bresolin, Roberto Giorda, and Uberto Pozzoli

Silencer elements as possible inhibitors of pseudoexon splicing
Nucl. Acids Res. 2004 32: 1783-1791; doi:10.1093/nar/gkh341 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Robert C. Edgar

MUSCLE: multiple sequence alignment with high accuracy and high throughput
Nucl. Acids Res. 2004 32: 1792-1797; doi:10.1093/nar/gkh340 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Cheng-Fu Chang, Ka-Man Wai, and Hugh G. Patterton

Calculating the statistical significance of physical clusters of co-regulated genes in the genome: the role of chromatin in domain-wide gene regulation
Nucl. Acids Res. 2004 32: 1798-1807; doi:10.1093/nar/gkh507 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Davide De Pietri Tonelli, Marija Mihailovich, Alessandra Di Cesare, Franca Codazzi, Fabio Grohovaz, and Daniele Zacchetti

Translational regulation of BACE-1 expression in neuronal and non-neuronal cells
Nucl. Acids Res. 2004 32: 1808-1817; doi:10.1093/nar/gkh348 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Skirmantas Kriaucionis and Adrian Bird

The major form of MeCP2 has a novel N-terminus generated by alternative splicing
Nucl. Acids Res. 2004 32: 1818-1823; doi:10.1093/nar/gkh349 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Martin J. Serra, Patricia E. Smolter, and Eric Westhof

Pronouced instability of tandem IU base pairs in RNA
Nucl. Acids Res. 2004 32: 1824-1828; doi:10.1093/nar/gkh501 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

James A. Glossop, Tim R. Dafforn, and Stefan G. E. Roberts

A conformational change in TFIIB is required for activator-mediated assembly of the preinitiation complex
Nucl. Acids Res. 2004 32: 1829-1835; doi:10.1093/nar/gkh504 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sharon S. C. Thio, Joseph V. Bonventre, and Stephen I-Hong Hsu

The CtBP2 co-repressor is regulated by NADH-dependent dimerization and possesses a novel N-terminal repression domain
Nucl. Acids Res. 2004 32: 1836-1847; doi:10.1093/nar/gkh344 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Alan Willse, Timothy M. Straub, Sharon C. Wunschel, Jack A. Small, Douglas R. Call, Don S. Daly, and Darrell P. Chandler

Quantitative oligonucleotide microarray fingerprinting of Salmonella enterica isolates
Nucl. Acids Res. 2004 32: 1848-1856; doi:10.1093/nar/gkh329 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Wei Yu, Kathleen F. Pirollo, Bin Yu, Antonina Rait, Laiman Xiang, Weiqun Huang, Qi Zhou, Gözen Ertem, and Esther H. Chang

Enhanced transfection efficiency of a systemically delivered tumor-targeting immunolipoplex by inclusion of a pH-sensitive histidylated oligolysine peptide
Nucl. Acids Res. 2004 32: e48; doi:10.1093/nar/gnh049 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Gabriele Dorn, Sadhana Patel, Glen Wotherspoon, Maja Hemmings-Mieszczak, Jane Barclay, Francois J. C. Natt, Pierre Martin, Stuart Bevan, Alyson Fox, Pam Ganju, William Wishart, and Jonathan Hall

siRNA relieves chronic neuropathic pain
Nucl. Acids Res. 2004 32: e49; doi:10.1093/nar/gnh044 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ahmed Ashour Ahmed, Maria Vias, N. Gopalakrishna Iyer, Carlos Caldas, and James D. Brenton

Microarray segmentation methods significantly influence data precision
Nucl. Acids Res. 2004 32: e50; doi:10.1093/nar/gnh047 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Shailender Nagpal, Mazen W. Karaman, Michelle M. Timmerman, Vincent V. Ho, Brian L. Pike, and Joseph G. Hacia

Improving the sensitivity and specificity of gene expression analysis in highly related organisms through the use of electronic masks
Nucl. Acids Res. 2004 32: e51; doi:10.1093/nar/gnh048 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Olga B. Zhelyabovskaya, Yuri A. Berlin, and Klara R. Birikh

Artificial genetic selection for an efficient translation initiation site for expression of human RACK1 gene in Escherichia coli
Nucl. Acids Res. 2004 32: e52; doi:10.1093/nar/gnh050 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Matilde E. Lleonart, Santiago Ramón y Cajal, John D. Groopman, and Marlin D. Friesen

Sensitive and specific detection of K-ras mutations in colon tumors by short oligonucleotide mass analysis
Nucl. Acids Res. 2004 32: e53; doi:10.1093/nar/gnh051 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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