Nucleic Acids Research

Articles:

Anne Pryor, Luh Tung, Zhe Yang, Fehmida Kapadia, Tien-Hsien Chang, and Lee F. Johnson

Growth-regulated expression and G₀-specific turnover of the mRNA that encodes URH49, a mammalian DExH/D box protein that is highly related to the mRNA export protein UAP56
Nucl. Acids Res. 2004 32: 1857-1865; doi:10.1093/nar/gkh347 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Zoltan Sandor, Monica L. Calicchio, R. Geoffrey Sargent, David B. Roth, and John H. Wilson

Distinct requirements for Ku in N nucleotide addition at V(D)J- and non-V(D)J-generated double-strand breaks
Nucl. Acids Res. 2004 32: 1866-1873; doi:10.1093/nar/gkh502 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Rita Crinelli, Marzia Bianchi, Lucia Gentilini, Linda Palma, Mads D. Sørensen, Torsten Bryld, Ravindra B. Babu, Khalil Arar, Jesper Wengel, and Mauro Magnani

Transcription factor decoy oligonucleotides modified with locked nucleic acids: an in vitro study to reconcile biostability with binding affinity
Nucl. Acids Res. 2004 32: 1874-1885; doi:10.1093/nar/gkh503 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

L. Matthew Arthur, Karin Gustausson, Karl-Peter Hopfner, Christian T. Carson, Travis H. Stracker, Annette Karcher, Diana Felton, Matthew D. Weitzman, John Tainer, and James P. Carney

Structural and functional analysis of Mre11-3
Nucl. Acids Res. 2004 32: 1886-1893; doi:10.1093/nar/gkh343 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Pavel E. Pestryakov, Denis Y. Khlimankov, Elena Bochkareva, Alexey Bochkarev, and Olga I. Lavrik

Human replication protein A (RPA) binds a primer–template junction in the absence of its major ssDNA-binding domains
Nucl. Acids Res. 2004 32: 1894-1903; doi:10.1093/nar/gkh346 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Peter J. Hawryluk, Andrea Újvári, and Donal S. Luse

Characterization of a novel RNA polymerase II arrest site which lacks a weak 3' RNA–DNA hybrid
Nucl. Acids Res. 2004 32: 1904-1916; doi:10.1093/nar/gkh505 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Amadou Bah, François Bachand, Éveline Clair, Chantal Autexier, and Raymund J. Wellinger

Humanized telomeres and an attempt to express a functional human telomerase in yeast
Nucl. Acids Res. 2004 32: 1917-1927; doi:10.1093/nar/gkh511 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Nadezhda L. Mironova, Dmytryi V. Pyshnyi, Eugenya M. Ivanova, Marina A. Zenkova, Hans J. Gross, and Valentin V. Vlassov

Covalently attached oligodeoxyribonucleotides induce RNase activity of a short peptide and modulate its base specificity
Nucl. Acids Res. 2004 32: 1928-1936; doi:10.1093/nar/gkh514 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Scott C. Johnson, Christopher B. Sherrill, David J. Marshall, Michael J. Moser, and James R. Prudent

A third base pair for the polymerase chain reaction: inserting isoC and isoG
Nucl. Acids Res. 2004 32: 1937-1941; doi:10.1093/nar/gkh522 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Eric J. Perkins, Barbara L. Kee, and Dale A. Ramsden

Histone 3 lysine 4 methylation during the pre-B to immature B-cell transition
Nucl. Acids Res. 2004 32: 1942-1947; doi:10.1093/nar/gkh523 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Hsien-Da Huang, Jorng-Tzong Horng, Yi-Ming Sun, Ann-Ping Tsou, and Shir-Ly Huang

Identifying transcriptional regulatory sites in the human genome using an integrated system
Nucl. Acids Res. 2004 32: 1948-1956; doi:10.1093/nar/gkh345 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Audrey Castet, Abdelhay Boulahtouf, Gwennaëlle Versini, Sandrine Bonnet, Patrick Augereau, Françoise Vignon, Saadi Khochbin, Stéphan Jalaguier, and Vincent Cavaillès

Multiple domains of the Receptor-Interacting Protein 140 contribute to transcription inhibition
Nucl. Acids Res. 2004 32: 1957-1966; doi:10.1093/nar/gkh524 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Wesley D. Block, Dennis Merkle, Katheryn Meek, and Susan P. Lees-Miller

Selective inhibition of the DNA-dependent protein kinase (DNA-PK) by the radiosensitizing agent caffeine
Nucl. Acids Res. 2004 32: 1967-1972; doi:10.1093/nar/gkh508 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Carlos J. Paredes, Isidore Rigoutsos, and E. Terry Papoutsakis

Transcriptional organization of the Clostridium acetobutylicum genome
Nucl. Acids Res. 2004 32: 1973-1981; doi:10.1093/nar/gkh509 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Joongbaek Kim, Shige H. Yoshimura, Kohji Hizume, Ryosuke L. Ohniwa, Akira Ishihama, and Kunio Takeyasu

Fundamental structural units of the Escherichia coli nucleoid revealed by atomic force microscopy
Nucl. Acids Res. 2004 32: 1982-1992; doi:10.1093/nar/gkh512 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Wen-Tao Peng, Nevan J. Krogan, Dawn P. Richards, Jack F. Greenblatt, and Timothy R. Hughes

ESF1 is required for 18S rRNA synthesis in Saccharomyces cerevisiae
Nucl. Acids Res. 2004 32: 1993-1999; doi:10.1093/nar/gkh518 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Eilyn R. Lacy, Binh Nguyen, Minh Le, Kari K. Cox, Caroline O’Hare, John A. Hartley, Moses Lee, and W. David Wilson

Energetic basis for selective recognition of T·G mismatched base pairs in DNA by imidazole-rich polyamides
Nucl. Acids Res. 2004 32: 2000-2007; doi:10.1093/nar/gkh515 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Byong Hoon Yoo, Elena Bochkareva, Alexey Bochkarev, Tung-Chung Mou, and Donald M. Gray

2'-O-methyl-modified phosphorothioate antisense oligonucleotides have reduced non-specific effects in vitro
Nucl. Acids Res. 2004 32: 2008-2016; doi:10.1093/nar/gkh516 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Archna P. Massey and Snorri Th. Sigurdsson

Chemical syntheses of inhibitory substrates of the RNA–RNA ligation reaction catalyzed by the hairpin ribozyme
Nucl. Acids Res. 2004 32: 2017-2022; doi:10.1093/nar/gkh517 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Yu Zhang, Yuchen Huang, Lei Zhang, Ying Li, Tingting Lu, Yiqi Lu, Qi Feng, Qiang Zhao, Zhukuan Cheng, Yongbiao Xue, Rod A. Wing, and Bin Han

Structural features of the rice chromosome 4 centromere
Nucl. Acids Res. 2004 32: 2023-2030; doi:10.1093/nar/gkh521 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jean-Leon Chong, Ray-Yuan Chuang, Luh Tung, and Tien-Hsien Chang

Ded1p, a conserved DExD/H-box translation factor, can promote yeast L-A virus negative-strand RNA synthesis in vitro
Nucl. Acids Res. 2004 32: 2031-2038; doi:10.1093/nar/gkh519 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Mogens Duch, Maria L. Carrasco, Thomas Jespersen, Lars Aagaard, and Finn Skou Pedersen

An RNA secondary structure bias for non-homologous reverse transcriptase-mediated deletions in vivo
Nucl. Acids Res. 2004 32: 2039-2048; doi:10.1093/nar/gkh513 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Peik Haugen and Debashish Bhattacharya

The spread of LAGLIDADG homing endonuclease genes in rDNA
Nucl. Acids Res. 2004 32: 2049-2057; doi:10.1093/nar/gkh520 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

NAR Methods Online:

A. Mark Settles, Susan Latshaw, and Donald R. McCarty

Molecular analysis of high-copy insertion sites in maize
Nucl. Acids Res. 2004 32: e54; doi:10.1093/nar/gnh052 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Matthew P. Johnson, Larisa M. Haupt, and Lyn R. Griffiths

Locked nucleic acid (LNA) single nucleotide polymorphism (SNP) genotype analysis and validation using real-time PCR
Nucl. Acids Res. 2004 32: e55; doi:10.1093/nar/gnh046 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Stéphane Swillens, Jean-Christophe Goffard, Yoann Maréchal, Alban de Kerchove d’Exaerde, and Hakim El Housni

Instant evaluation of the absolute initial number of cDNA copies from a single real-time PCR curve
Nucl. Acids Res. 2004 32: e56; doi:10.1093/nar/gnh053 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Philip J. Santangelo, Brent Nix, Andrew Tsourkas, and Gang Bao

Dual FRET molecular beacons for mRNA detection in living cells
Nucl. Acids Res. 2004 32: e57; doi:10.1093/nar/gnh062 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Nitin Nitin, Philip J. Santangelo, Gloria Kim, Shuming Nie, and Gang Bao

Peptide-linked molecular beacons for efficient delivery and rapid mRNA detection in living cells
Nucl. Acids Res. 2004 32: e58; doi:10.1093/nar/gnh063 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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