Nucleic Acids Research

Articles:

Ascensión Prieto-Martín, Julio Montoya, and Francisco Martínez-Azorín

Phosphorylation of rat mitochondrial transcription termination factor (mTERF) is required for transcription termination but not for binding to DNA
Nucl. Acids Res. 2004 32: 2059-2068; doi:10.1093/nar/gkh528 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

V. Leh-Louis, B. Wirth, L. Despons, S. Wain-Hobson, S. Potier, and J. L. Souciet

Differential evolution of the Saccharomyces cerevisiae DUP240 paralogs and implication of recombination in phylogeny
Nucl. Acids Res. 2004 32: 2069-2078; doi:10.1093/nar/gkh529 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Olga V. Iarovaia, Andrey Bystritskiy, Dmitrii Ravcheev, Ronald Hancock, and Sergey V. Razin

Visualization of individual DNA loops and a map of loop domains in the human dystrophin gene
Nucl. Acids Res. 2004 32: 2079-2086; doi:10.1093/nar/gkh532 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Hongliang Zhang, Ling-Hua Meng, Drazen B. Zimonjic, Nicholas C. Popescu, and Yves Pommier

Thirteen-exon-motif signature for vertebrate nuclear and mitochondrial type IB topoisomerases
Nucl. Acids Res. 2004 32: 2087-2092; doi:10.1093/nar/gkh525 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Li Liu, Katie K. Maguire, and Eric B. Kmiec

Genetic re-engineering of Saccharomyces cerevisiae RAD51 leads to a significant increase in the frequency of gene repair in vivo
Nucl. Acids Res. 2004 32: 2093-2101; doi:10.1093/nar/gkh506 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Latha M. Santhakumaran, Thresia Thomas, and T. J. Thomas

Enhanced cellular uptake of a triplex-forming oligonucleotide by nanoparticle formation in the presence of polypropylenimine dendrimers
Nucl. Acids Res. 2004 32: 2102-2112; doi:10.1093/nar/gkh526 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Rachel Flomen, Joanne Knight, Pak Sham, Robert Kerwin, and Andrew Makoff

Evidence that RNA editing modulates splice site selection in the 5-HT2C receptor gene
Nucl. Acids Res. 2004 32: 2113-2122; doi:10.1093/nar/gkh536 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Emma C. Forrest, Carlo Cogoni, and Giuseppe Macino

The RNA-dependent RNA polymerase, QDE-1, is a rate-limiting factor in post-transcriptional gene silencing in Neurospora crassa
Nucl. Acids Res. 2004 32: 2123-2128; doi:10.1093/nar/gkh530 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Caroline Gabus, Rachid Mazroui, Sandra Tremblay, Edouard W. Khandjian, and Jean-Luc Darlix

The fragile X mental retardation protein has nucleic acid chaperone properties
Nucl. Acids Res. 2004 32: 2129-2137; doi:10.1093/nar/gkh535 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Tim J. M. Welting, Walther J. van Venrooij, and Ger J. M. Pruijn

Mutual interactions between subunits of the human RNase MRP ribonucleoprotein complex
Nucl. Acids Res. 2004 32: 2138-2146; doi:10.1093/nar/gkh539 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

X. Chen, Z. Su, P. Dam, B. Palenik, Y. Xu, and T. Jiang

Operon prediction by comparative genomics: an application to the Synechococcus sp. WH8102 genome
Nucl. Acids Res. 2004 32: 2147-2157; doi:10.1093/nar/gkh510 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sheng Cui, Daniele Arosio, Kevin M. Doherty, Robert M. Brosh, Jr, Arturo Falaschi, and Alessandro Vindigni

Analysis of the unwinding activity of the dimeric RECQ1 helicase in the presence of human replication protein A
Nucl. Acids Res. 2004 32: 2158-2170; doi:10.1093/nar/gkh540 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Sylvain Huard and Chantal Autexier

Human telomerase catalyzes nucleolytic primer cleavage
Nucl. Acids Res. 2004 32: 2171-2180; doi:10.1093/nar/gkh546 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

J.A. Stuart, K. Hashiguchi, D.M. Wilson, III, W.C. Copeland, N.C. Souza-Pinto, and V.A. Bohr

DNA base excision repair activities and pathway function in mitochondrial and cellular lysates from cells lacking mitochondrial DNA
Nucl. Acids Res. 2004 32: 2181-2192; doi:10.1093/nar/gkh533 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jinshui Fan, Marit Otterlei, Heng-Kuan Wong, Alan E. Tomkinson, and David M. Wilson, III

XRCC1 co-localizes and physically interacts with PCNA
Nucl. Acids Res. 2004 32: 2193-2201; doi:10.1093/nar/gkh556 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Hyun Jin Kwun and Kyung Lib Jang

Natural variants of hepatitis B virus X protein have differential effects on the expression of cyclin-dependent kinase inhibitor p21 gene
Nucl. Acids Res. 2004 32: 2202-2213; doi:10.1093/nar/gkh553 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Ming-Hon Hou, Howard Robinson, Yi-Gui Gao, and Andrew H.-J. Wang

Crystal structure of the [Mg²⁺-(chromomycin A₃)₂]–d(TTGGCCAA)₂ complex reveals GGCC binding specificity of the drug dimer chelated by a metal ion
Nucl. Acids Res. 2004 32: 2214-2222; doi:10.1093/nar/gkh549 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

T.-J. Su, B. A. Connolly, C. Darlington, R. Mallin, and D. T. F. Dryden

Unusual 2-aminopurine fluorescence from a complex of DNA and the EcoKI methyltransferase
Nucl. Acids Res. 2004 32: 2223-2230; doi:10.1093/nar/gkh531 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Gan Wang, Lynn Chuang, Xiaohong Zhang, Stephanie Colton, Alan Dombkowski, John Reiners, Amy Diakiw, and Xiaoxin Susan Xu

The initiative role of XPC protein in cisplatin DNA damaging treatment-mediated cell cycle regulation
Nucl. Acids Res. 2004 32: 2231-2240; doi:10.1093/nar/gkh541 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Cynthia L. Hendrickson, Kevin G. Devine, and Steven A. Benner

Probing minor groove recognition contacts by DNA polymerases and reverse transcriptases using 3-deaza-2'-deoxyadenosine
Nucl. Acids Res. 2004 32: 2241-2250; doi:10.1093/nar/gkh542 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Davis Jose and Dietmar Porschke

Dynamics of the B–A transition of DNA double helices
Nucl. Acids Res. 2004 32: 2251-2258; doi:10.1093/nar/gkh551 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Hervé Acloque, Anne Mey, Anne Marie Birot, Henri Gruffat, Bertrand Pain, and Jacques Samarut

Transcription factor cCP2 controls gene expression in chicken embryonic stem cells
Nucl. Acids Res. 2004 32: 2259-2271; doi:10.1093/nar/gkh545 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Andrej Lupták and Jennifer A. Doudna

Distinct sites of phosphorothioate substitution interfere with folding and splicing of the Anabaena group I intron
Nucl. Acids Res. 2004 32: 2272-2280; doi:10.1093/nar/gkh548 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Roger G. Fahmy and Levon M. Khachigian

Locked nucleic acid modified DNA enzymes targeting early growth response-1 inhibit human vascular smooth muscle cell growth
Nucl. Acids Res. 2004 32: 2281-2285; doi:10.1093/nar/gkh543 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

Lei Young and Qihan Dong

Two-step total gene synthesis method
Nucl. Acids Res. 2004 32: e59; doi:10.1093/nar/gnh058 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Kyoko Takatsu, Toyokazu Yokomaku, Shinya Kurata, and Takahiro Kanagawa

A new approach to SNP genotyping with fluorescently labeled mononucleotides
Nucl. Acids Res. 2004 32: e60; doi:10.1093/nar/gnh054 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Jinping Cheng, Yongyou Zhang, and Qingge Li

Real-time PCR genotyping using displacing probes
Nucl. Acids Res. 2004 32: e61; doi:10.1093/nar/gnh055 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] [Request Permissions]  

Mary E. Hawkins and Frank M. Balis

Use of pteridine nucleoside analogs as hybridization probes
Nucl. Acids Res. 2004 32: e62; doi:10.1093/nar/gnh060 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Abdullah Karadag, Mara Riminucci, Paolo Bianco, Natasha Cherman, Sergei A. Kuznetsov, Nga Nguyen, Michael T. Collins, Pamela G. Robey, and Larry W. Fisher

A novel technique based on a PNA hybridization probe and FRET principle for quantification of mutant genotype in fibrous dysplasia/McCune–Albright syndrome
Nucl. Acids Res. 2004 32: e63; doi:10.1093/nar/gnh059 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Nana Jacobsen, Peter Stein Nielsen, Daniel Charlton Jeffares, Jens Eriksen, Helle Ohlsson, Peter Arctander, and Sakari Kauppinen

Direct isolation of poly(A)⁺ RNA from 4 M guanidine thiocyanate-lysed cell extracts using locked nucleic acid-oligo(T) capture
Nucl. Acids Res. 2004 32: e64; doi:10.1093/nar/gnh056 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Deirdre Murphy, Ramon Eritja, and Gareth Redmond

Monitoring denaturation behaviour and comparative stability of DNA triple helices using oligonucleotide–gold nanoparticle conjugates
Nucl. Acids Res. 2004 32: e65; doi:10.1093/nar/gnh065 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Vivi Kasim, Makoto Miyagishi, and Kazunari Taira

Control of siRNA expression using the Cre–loxP recombination system
Nucl. Acids Res. 2004 32: e66; doi:10.1093/nar/gnh061 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Martin R. Jakobsen, Christian K. Damgaard, Ebbe S. Andersen, Anna Podhajska, and Jørgen Kjems

A genomic selection strategy to identify accessible and dimerization blocking targets in the 5'-UTR of HIV-1 RNA
Nucl. Acids Res. 2004 32: e67; doi:10.1093/nar/gnh064 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Naoki Kimura, Ryuichi Oda, Yoshiaki Inaki, and Osamu Suzuki

Attachment of oligonucleotide probes to poly carbodiimide-coated glass for microarray applications
Nucl. Acids Res. 2004 32: e68; doi:10.1093/nar/gnh057 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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