Nucl. Acids Res. -- Table of Contents (32 [Web Server Issue])

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Contents: Volume 32, Web Server Issue    July 1 2004    [Index by Author]

       Editorial

       Articles

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Editorial:

: EDITORIAL
Nucl. Acids Res. 2004 32: W1; doi:10.1093/nar/gkh487 [Extract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Articles:

Nicola Harte, Ville Silventoinen, Emmanuel Quevillon, Stephen Robinson, Kimmo Kallio, Xavier Fustero, Pravin Patel, Petteri Jokinen, and Rodrigo Lopez: Public web-based services from the European Bioinformatics Institute
Nucl. Acids Res. 2004 32: W3-W9; doi:10.1093/nar/gkh405 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Tien Huynh and Isidore Rigoutsos: The web server of IBM's Bioinformatics and Pattern Discovery group: 2004 update
Nucl. Acids Res. 2004 32: W10-W15; doi:10.1093/nar/gkh367 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Karsten Hokamp and Kenneth H. Wolfe: PubCrawler: keeping up comfortably with PubMed and GenBank
Nucl. Acids Res. 2004 32: W16-W19; doi:10.1093/nar/gkh453 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Scott McGinnis and Thomas L. Madden: BLAST: at the core of a powerful and diverse set of sequence analysis tools
Nucl. Acids Res. 2004 32: W20-W25; doi:10.1093/nar/gkh435 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

John B. Spalding and Peter J. Lammers: BLAST Filter and GraphAlign: rule-based formation and analysis of sets of related DNA and protein sequences
Nucl. Acids Res. 2004 32: W26-W32; doi:10.1093/nar/gkh459 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Burkhard Morgenstern: DIALIGN: multiple DNA and protein sequence alignment at BiBiServ
Nucl. Acids Res. 2004 32: W33-W36; doi:10.1093/nar/gkh373 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Olivier Poirot, Karsten Suhre, Chantal Abergel, Eamonn O'Toole, and Cedric Notredame: 3DCoffee@igs: a web server for combining sequences and structures into a multiple sequence alignment
Nucl. Acids Res. 2004 32: W37-W40; doi:10.1093/nar/gkh382 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Michael Brudno, Rasmus Steinkamp, and Burkhard Morgenstern: The CHAOS/DIALIGN WWW server for multiple alignment of genomic sequences
Nucl. Acids Res. 2004 32: W41-W44; doi:10.1093/nar/gkh361 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Ji Qi, Hong Luo, and Bailin Hao: CVTree: a phylogenetic tree reconstruction tool based on whole genomes
Nucl. Acids Res. 2004 32: W45-W47; doi:10.1093/nar/gkh362 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Radek Zika, Jan Paces, Adam Pavlícek, and Václav Paces: WAViS server for handling, visualization and presentation of multiple alignments of nucleotide or amino acids sequences
Nucl. Acids Res. 2004 32: W48-W49; doi:10.1093/nar/gkh358 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Jahnavi C. Prasad, Sandor Vajda, and Carlos J. Camacho: Consensus alignment server for reliable comparative modeling with distant templates
Nucl. Acids Res. 2004 32: W50-W54; doi:10.1093/nar/gkh456 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Masato Ohtsuka, Shohei Horiuchi, Jerzy K. Kulski, Minoru Kimura, and Hidetoshi Inoko: CHOP: visualization of ‘wobbling’ and isolation of highly conserved regions from aligned DNA sequences
Nucl. Acids Res. 2004 32: W55-W58; doi:10.1093/nar/gkh448 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

William C. Ray: MAVL and StickWRLD: visually exploring relationships in nucleic acid sequence alignments
Nucl. Acids Res. 2004 32: W59-W63; doi:10.1093/nar/gkh469 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Dmitry A. Afonnikov and Nikolay A. Kolchanov: CRASP: a program for analysis of coordinated substitutions in multiple alignments of protein sequences
Nucl. Acids Res. 2004 32: W64-W68; doi:10.1093/nar/gkh451 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Soon-Heng Tan, Zhuo Zhang, and See-Kiong Ng: ADVICE: Automated Detection and Validation of Interaction by Co-Evolution
Nucl. Acids Res. 2004 32: W69-W72; doi:10.1093/nar/gkh471 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] OPEN ACCESS ARTICLE

Zhuo Zhang and See-Kiong Ng: InterWeaver: interaction reports for discovering potential protein interaction partners with online evidence
Nucl. Acids Res. 2004 32: W73-W75; doi:10.1093/nar/gkh437 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Darby Tien-Hau Chang, Chien-Yu Chen, Wen-Chin Chung, Yen-Jen Oyang, Hsueh-Fen Juan, and Hsuan-Cheng Huang: ProteMiner-SSM: a web server for efficient analysis of similar protein tertiary substructures
Nucl. Acids Res. 2004 32: W76-W82; doi:10.1093/nar/gkh425 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] OPEN ACCESS ARTICLE

Brian P. Kelley, Bingbing Yuan, Fran Lewitter, Roded Sharan, Brent R. Stockwell, and Trey Ideker: PathBLAST: a tool for alignment of protein interaction networks
Nucl. Acids Res. 2004 32: W83-W88; doi:10.1093/nar/gkh411 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Kyungsook Han, Byong-Hyon Ju, and Haemoon Jung: WebInterViewer: visualizing and analyzing molecular interaction networks
Nucl. Acids Res. 2004 32: W89-W95; doi:10.1093/nar/gkh462 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Stephen R. Comeau, David W. Gatchell, Sandor Vajda, and Carlos J. Camacho: ClusPro: a fully automated algorithm for protein–protein docking
Nucl. Acids Res. 2004 32: W96-W99; doi:10.1093/nar/gkh354 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Chittibabu Guda, Sifang Lu, Eric D. Scheeff, Philip E. Bourne, and Ilya N. Shindyalov: CE-MC: a multiple protein structure alignment server
Nucl. Acids Res. 2004 32: W100-W103; doi:10.1093/nar/gkh464 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Shandar Ahmad and Akinori Sarai: Qgrid: clustering tool for detecting charged and hydrophobic regions in proteins
Nucl. Acids Res. 2004 32: W104-W107; doi:10.1093/nar/gkh363 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Kirill Rotmistrovsky, Wonhee Jang, and Gregory D. Schuler: A web server for performing electronic PCR
Nucl. Acids Res. 2004 32: W108-W112; doi:10.1093/nar/gkh450 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Andreas Henschel, Frank Buchholz, and Bianca Habermann: DEQOR: a web-based tool for the design and quality control of siRNAs
Nucl. Acids Res. 2004 32: W113-W120; doi:10.1093/nar/gkh408 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] OPEN ACCESS ARTICLE

Peter Dudek and Didier Picard: TROD: T7 RNAi Oligo Designer
Nucl. Acids Res. 2004 32: W121-W123; doi:10.1093/nar/gkh360 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Yuki Naito, Tomoyuki Yamada, Kumiko Ui-Tei, Shinichi Morishita, and Kaoru Saigo: siDirect: highly effective, target-specific siRNA design software for mammalian RNA interference
Nucl. Acids Res. 2004 32: W124-W129; doi:10.1093/nar/gkh442 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Bingbing Yuan, Robert Latek, Markus Hossbach, Thomas Tuschl, and Fran Lewitter: siRNA Selection Server: an automated siRNA oligonucleotide prediction server
Nucl. Acids Res. 2004 32: W130-W134; doi:10.1093/nar/gkh366 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Ye Ding, Chi Yu Chan, and Charles E. Lawrence: Sfold web server for statistical folding and rational design of nucleic acids
Nucl. Acids Res. 2004 32: W135-W141; doi:10.1093/nar/gkh449 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Hélène Touzet and Olivier Perriquet: CARNAC: folding families of related RNAs
Nucl. Acids Res. 2004 32: W142-W145; doi:10.1093/nar/gkh415 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Jianhua Ruan, Gary D. Stormo, and Weixiong Zhang: ILM: a web server for predicting RNA secondary structures with pseudoknots
Nucl. Acids Res. 2004 32: W146-W149; doi:10.1093/nar/gkh444 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Xiaomin Ying, Hong Luo, Jingchu Luo, and Wuju Li: RDfolder: a web server for prediction of RNA secondary structure
Nucl. Acids Res. 2004 32: W150-W153; doi:10.1093/nar/gkh445 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Peter Bengert and Thomas Dandekar: Riboswitch finder—a tool for identification of riboswitch RNAs
Nucl. Acids Res. 2004 32: W154-W159; doi:10.1093/nar/gkh352 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

André Lambert, Jean-Fred Fontaine, Matthieu Legendre, Fabrice Leclerc, Emmanuelle Permal, François Major, Harald Putzer, Olivier Delfour, Bernard Michot, and Daniel Gautheret: The ERPIN server: an interface to profile-based RNA motif identification
Nucl. Acids Res. 2004 32: W160-W165; doi:10.1093/nar/gkh418 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Sònia Casillas and Antonio Barbadilla: PDA: a pipeline to explore and estimate polymorphism in large DNA databases
Nucl. Acids Res. 2004 32: W166-W169; doi:10.1093/nar/gkh428 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] OPEN ACCESS ARTICLE

Stefan Weckx, Peter De Rijk, Christine Van Broeckhoven, and Jurgen Del-Favero: SNPbox: web-based high-throughput primer design from gene to genome
Nucl. Acids Res. 2004 32: W170-W172; doi:10.1093/nar/gkh369 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Wolfgang Helmberg, Raymond Dunivin, and Michael Feolo: The sequencing-based typing tool of dbMHC: typing highly polymorphic gene sequences
Nucl. Acids Res. 2004 32: W173-W175; doi:10.1093/nar/gkh424 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Jean-Marie Rouillard, Woonghee Lee, Gilles Truan, Xiaolian Gao, Xiaochuan Zhou, and Erdogan Gulari: Gene2Oligo: oligonucleotide design for in vitro gene synthesis
Nucl. Acids Res. 2004 32: W176-W180; doi:10.1093/nar/gkh401 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Namshin Kim, Seokmin Shin, and Sanghyuk Lee: ASmodeler: gene modeling of alternative splicing from genomic alignment of mRNA, EST and protein sequences
Nucl. Acids Res. 2004 32: W181-W186; doi:10.1093/nar/gkh404 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

William G. Fairbrother, Gene W. Yeo, Rufang Yeh, Paul Goldstein, Matthew Mawson, Phillip A. Sharp, and Christopher B. Burge: RESCUE-ESE identifies candidate exonic splicing enhancers in vertebrate exons
Nucl. Acids Res. 2004 32: W187-W190; doi:10.1093/nar/gkh393 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Anason S. Halees and Zhiping Weng: PromoSer: improvements to the algorithm, visualization and accessibility
Nucl. Acids Res. 2004 32: W191-W194; doi:10.1093/nar/gkh433 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Wynand B.L. Alkema, Öjvind Johansson, Jens Lagergren, and Wyeth W. Wasserman: MSCAN: identification of functional clusters of transcription factor binding sites
Nucl. Acids Res. 2004 32: W195-W198; doi:10.1093/nar/gkh387 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Giulio Pavesi, Paolo Mereghetti, Giancarlo Mauri, and Graziano Pesole: Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes
Nucl. Acids Res. 2004 32: W199-W203; doi:10.1093/nar/gkh465 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] OPEN ACCESS ARTICLE

Yueyi Liu, Liping Wei, Serafim Batzoglou, Douglas L. Brutlag, Jun S. Liu, and X. Shirley Liu: A suite of web-based programs to search for transcriptional regulatory motifs
Nucl. Acids Res. 2004 32: W204-W207; doi:10.1093/nar/gkh461 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

D. Y. Oshchepkov, E. E. Vityaev, D. A. Grigorovich, E. V. Ignatieva, and T. M. Khlebodarova: SITECON: a tool for detecting conservative conformational and physicochemical properties in transcription factor binding site alignments and for site recognition
Nucl. Acids Res. 2004 32: W208-W212; doi:10.1093/nar/gkh474 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Peter M. Haverty, Martin C. Frith, and Zhiping Weng: CARRIE web service: automated transcriptional regulatory network inference and interactive analysis
Nucl. Acids Res. 2004 32: W213-W216; doi:10.1093/nar/gkh402 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] OPEN ACCESS ARTICLE

Gabriela G. Loots and Ivan Ovcharenko: rVISTA 2.0: evolutionary analysis of transcription factor binding sites
Nucl. Acids Res. 2004 32: W217-W221; doi:10.1093/nar/gkh383 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Matti Kankainen and Liisa Holm: POBO, transcription factor binding site verification with bootstrapping
Nucl. Acids Res. 2004 32: W222-W229; doi:10.1093/nar/gkh463 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] OPEN ACCESS ARTICLE

Hong Pan, Li Zuo, Vidhu Choudhary, Zhuo Zhang, Shoi Houi Leow, Fui Teen Chong, Yingliang Huang, Victor Wui Siong Ong, Bijayalaxmi Mohanty, Sin Lam Tan, S. P. T. Krishnan, and Vladimir B. Bajic: Dragon TF Association Miner: a system for exploring transcription factor associations through text-mining
Nucl. Acids Res. 2004 32: W230-W234; doi:10.1093/nar/gkh484 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] OPEN ACCESS ARTICLE

Zhenjun Hu, Yutao Fu, Anason S. Halees, Szymon M. Kielbasa, and Zhiping Weng: SeqVISTA: a new module of integrated computational tools for studying transcriptional regulation
Nucl. Acids Res. 2004 32: W235-W241; doi:10.1093/nar/gkh483 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Lucía Conde, Juan M. Vaquerizas, Javier Santoyo, Fátima Al-Shahrour, Sergio Ruiz-Llorente, Mercedes Robledo, and Joaquín Dopazo: PupaSNP Finder: a web tool for finding SNPs with putative effect at transcriptional level
Nucl. Acids Res. 2004 32: W242-W248; doi:10.1093/nar/gkh438 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Albin Sandelin, Wyeth W. Wasserman, and Boris Lenhard: ConSite: web-based prediction of regulatory elements using cross-species comparison
Nucl. Acids Res. 2004 32: W249-W252; doi:10.1093/nar/gkh372 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Roded Sharan, Asa Ben-Hur, Gabriela G. Loots, and Ivan Ovcharenko: CREME: Cis-Regulatory Module Explorer for the human genome
Nucl. Acids Res. 2004 32: W253-W256; doi:10.1093/nar/gkh385 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Vinsensius B. Vega, Dhinoth Kumar Bangarusamy, Lance D. Miller, Edison T. Liu, and Chin-Yo Lin: BEARR: Batch Extraction and Analysis of cis-Regulatory Regions
Nucl. Acids Res. 2004 32: W257-W260; doi:10.1093/nar/gkh396 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Klaus Karl Lohmann and Claus-W. von der Lieth: GlycoFragment and GlycoSearchMS: web tools to support the interpretation of mass spectra of complex carbohydrates
Nucl. Acids Res. 2004 32: W261-W266; doi:10.1093/nar/gkh392 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Kiyoko F. Aoki, Atsuko Yamaguchi, Nobuhisa Ueda, Tatsuya Akutsu, Hiroshi Mamitsuka, Susumu Goto, and Minoru Kanehisa: KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains
Nucl. Acids Res. 2004 32: W267-W272; doi:10.1093/nar/gkh473 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Kelly A. Frazer, Lior Pachter, Alexander Poliakov, Edward M. Rubin, and Inna Dubchak: VISTA: computational tools for comparative genomics
Nucl. Acids Res. 2004 32: W273-W279; doi:10.1093/nar/gkh458 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Ivan Ovcharenko, Marcelo A. Nobrega, Gabriela G. Loots, and Lisa Stubbs: ECR Browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes
Nucl. Acids Res. 2004 32: W280-W286; doi:10.1093/nar/gkh355 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] OPEN ACCESS ARTICLE

José L. Oliver, Pedro Carpena, Michael Hackenberg, and Pedro Bernaola-Galván: IsoFinder: computational prediction of isochores in genome sequences
Nucl. Acids Res. 2004 32: W287-W292; doi:10.1093/nar/gkh399 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Marco Masseroli, Dario Martucci, and Francesco Pinciroli: GFINDer: Genome Function INtegrated Discoverer through dynamic annotation, statistical analysis, and mining
Nucl. Acids Res. 2004 32: W293-W300; doi:10.1093/nar/gkh432 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Jan Krüger, Alexander Sczyrba, Stefan Kurtz, and Robert Giegerich: e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences
Nucl. Acids Res. 2004 32: W301-W304; doi:10.1093/nar/gkh478 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Leila Taher, Oliver Rinner, Saurabh Garg, Alexander Sczyrba, and Burkhard Morgenstern: AGenDA: gene prediction by cross-species sequence comparison
Nucl. Acids Res. 2004 32: W305-W308; doi:10.1093/nar/gkh386 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Mario Stanke, Rasmus Steinkamp, Stephan Waack, and Burkhard Morgenstern: AUGUSTUS: a web server for gene finding in eukaryotes
Nucl. Acids Res. 2004 32: W309-W312; doi:10.1093/nar/gkh379 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] OPEN ACCESS ARTICLE

Detlef Groth, Hans Lehrach, and Steffen Hennig: GOblet: a platform for Gene Ontology annotation of anonymous sequence data
Nucl. Acids Res. 2004 32: W313-W317; doi:10.1093/nar/gkh406 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Sailu Yellaboina, Jayashree Seshadri, M. Senthil Kumar, and Akash Ranjan: PredictRegulon: a web server for the prediction of the regulatory protein binding sites and operons in prokaryote genomes
Nucl. Acids Res. 2004 32: W318-W320; doi:10.1093/nar/gkh364 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Burkhard Rost, Guy Yachdav, and Jinfeng Liu: The PredictProtein server
Nucl. Acids Res. 2004 32: W321-W326; doi:10.1093/nar/gkh377 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Aron Marchler-Bauer and Stephen H. Bryant: CD-Search: protein domain annotations on the fly
Nucl. Acids Res. 2004 32: W327-W331; doi:10.1093/nar/gkh454 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Marco Pagni, Vassilios Ioannidis, Lorenzo Cerutti, Monique Zahn-Zabal, C. Victor Jongeneel, and Laurent Falquet: MyHits: a new interactive resource for protein annotation and domain identification
Nucl. Acids Res. 2004 32: W332-W335; doi:10.1093/nar/gkh479 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

François Enault, Karsten Suhre, Olivier Poirot, Chantal Abergel, and Jean-Michel Claverie: Phydbac2: improved inference of gene function using interactive phylogenomic profiling and chromosomal location analysis
Nucl. Acids Res. 2004 32: W336-W339; doi:10.1093/nar/gkh365 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Richard D. LeDuc, Gregory K. Taylor, Yong-Bin Kim, Thomas E. Januszyk, Lee H. Bynum, Joseph V. Sola, John S. Garavelli, and Neil L. Kelleher: ProSight PTM: an integrated environment for protein identification and characterization by top-down mass spectrometry
Nucl. Acids Res. 2004 32: W340-W345; doi:10.1093/nar/gkh447 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Victor G. Levitsky: RECON: a program for prediction of nucleosome formation potential
Nucl. Acids Res. 2004 32: W346-W349; doi:10.1093/nar/gkh482 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Johann Lenffer, Paulo Lai, Wafaa El Mejaber, Asif M. Khan, Judice L. Y. Koh, Paul T. J. Tan, Seng H. Seah, and Vladimir Brusic: CysView: protein classification based on cysteine pairing patterns
Nucl. Acids Res. 2004 32: W350-W355; doi:10.1093/nar/gkh475 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Lesheng Kong, Bernett Teck Kwong Lee, Joo Chuan Tong, Tin Wee Tan, and Shoba Ranganathan: SDPMOD: an automated comparative modeling server for small disulfide-bonded proteins
Nucl. Acids Res. 2004 32: W356-W359; doi:10.1093/nar/gkh394 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Brian D. O'Connor and Todd O. Yeates: GDAP: a web tool for genome-wide protein disulfide bond prediction
Nucl. Acids Res. 2004 32: W360-W364; doi:10.1093/nar/gkh376 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Duane Szafron, Paul Lu, Russell Greiner, David S. Wishart, Brett Poulin, Roman Eisner, Zhiyong Lu, John Anvik, Cam Macdonell, Alona Fyshe, and David Meeuwis: Proteome Analyst: custom predictions with explanations in a web-based tool for high-throughput proteome annotations
Nucl. Acids Res. 2004 32: W365-W371; doi:10.1093/nar/gkh485 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Chittibabu Guda, Purnima Guda, Eoin Fahy, and Shankar Subramaniam: MITOPRED: a web server for the prediction of mitochondrial proteins
Nucl. Acids Res. 2004 32: W372-W374; doi:10.1093/nar/gkh374 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Karsten Hiller, Andreas Grote, Maurice Scheer, Richard Münch, and Dieter Jahn: PrediSi: prediction of signal peptides and their cleavage positions
Nucl. Acids Res. 2004 32: W375-W379; doi:10.1093/nar/gkh378 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

P. K. Papasaikas, P. G. Bagos, Z. I. Litou, V. J. Promponas, and S. J. Hamodrakas: PRED-GPCR: GPCR recognition and family classification server
Nucl. Acids Res. 2004 32: W380-W382; doi:10.1093/nar/gkh431 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Manoj Bhasin and G. P. S. Raghava: GPCRpred: an SVM-based method for prediction of families and subfamilies of G-protein coupled receptors
Nucl. Acids Res. 2004 32: W383-W389; doi:10.1093/nar/gkh416 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] OPEN ACCESS ARTICLE

Masafumi Arai, Hironori Mitsuke, Masami Ikeda, Jun-Xiong Xia, Takashi Kikuchi, Masanobu Satake, and Toshio Shimizu: ConPred II: a consensus prediction method for obtaining transmembrane topology models with high reliability
Nucl. Acids Res. 2004 32: W390-W393; doi:10.1093/nar/gkh380 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Frode S. Berven, Kristian Flikka, Harald B. Jensen, and Ingvar Eidhammer: BOMP: a program to predict integral ß-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria
Nucl. Acids Res. 2004 32: W394-W399; doi:10.1093/nar/gkh351 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Pantelis G. Bagos, Theodore D. Liakopoulos, Ioannis C. Spyropoulos, and Stavros J. Hamodrakas: PRED-TMBB: a web server for predicting the topology of ß-barrel outer membrane proteins
Nucl. Acids Res. 2004 32: W400-W404; doi:10.1093/nar/gkh417 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Mohd. Zeeshan Ansari, Gitanjali Yadav, Rajesh S. Gokhale, and Debasisa Mohanty: NRPS-PKS: a knowledge-based resource for analysis of NRPS/PKS megasynthases
Nucl. Acids Res. 2004 32: W405-W413; doi:10.1093/nar/gkh359 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] OPEN ACCESS ARTICLE

Manoj Bhasin and G. P. S. Raghava: ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST
Nucl. Acids Res. 2004 32: W414-W419; doi:10.1093/nar/gkh350 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Yutao Fu, Martin C. Frith, Peter M. Haverty, and Zhiping Weng: MotifViz: an analysis and visualization tool for motif discovery
Nucl. Acids Res. 2004 32: W420-W423; doi:10.1093/nar/gkh426 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Olga V. Kalinina, Pavel S. Novichkov, Andrey A. Mironov, Mikhail S. Gelfand, and Aleksandra B. Rakhmaninova: SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins
Nucl. Acids Res. 2004 32: W424-W428; doi:10.1093/nar/gkh391 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Cédric Muller, Mathieu Denis, Laurent Gentzbittel, and Thomas Faraut: The Iccare web server: an attempt to merge sequence and mapping information for plant and animal species
Nucl. Acids Res. 2004 32: W429-W434; doi:10.1093/nar/gkh460 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Véronique Giudicelli, Denys Chaume, and Marie-Paule Lefranc: IMGT/V-QUEST, an integrated software program for immunoglobulin and T cell receptor V–J and V–D–J rearrangement analysis
Nucl. Acids Res. 2004 32: W435-W440; doi:10.1093/nar/gkh412 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Kei-Hoi Cheung, Janet Hager, Deyun Pan, Ranjana Srivastava, Shrikant Mane, Yuli Li, Perry Miller, and Kenneth R. Williams: KARMA: a web server application for comparing and annotating heterogeneous microarray platforms
Nucl. Acids Res. 2004 32: W441-W444; doi:10.1093/nar/gkh397 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Lars Juhl Jensen, Julien Lagarde, Christian von Mering, and Peer Bork: ArrayProspector: a web resource of functional associations inferred from microarray expression data
Nucl. Acids Res. 2004 32: W445-W448; doi:10.1093/nar/gkh407 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Purvesh Khatri, Pratik Bhavsar, Gagandeep Bawa, and Sorin Draghici: Onto-Tools: an ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments
Nucl. Acids Res. 2004 32: W449-W456; doi:10.1093/nar/gkh409 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Karsten Hokamp, Fiona M. Roche, Michael Acab, Marc-Etienne Rousseau, Byron Kuo, David Goode, Dana Aeschliman, Jenny Bryan, Lorne A. Babiuk, Robert E. W. Hancock, and Fiona S. L. Brinkman: ArrayPipe: a flexible processing pipeline for microarray data
Nucl. Acids Res. 2004 32: W457-W459; doi:10.1093/nar/gkh446 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Hee-Joon Chung, Mingoo Kim, Chan Hee Park, Jihoon Kim, and Ju Han Kim: ArrayXPath: mapping and visualizing microarray gene-expression data with integrated biological pathway resources using Scalable Vector Graphics
Nucl. Acids Res. 2004 32: W460-W464; doi:10.1093/nar/gkh476 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Misha Kapushesky, Patrick Kemmeren, Aedín C. Culhane, Steffen Durinck, Jan Ihmels, Christine Körner, Meelis Kull, Aurora Torrente, Ugis Sarkans, Jaak Vilo, and Alvis Brazma: Expression Profiler: next generation—an online platform for analysis of microarray data
Nucl. Acids Res. 2004 32: W465-W470; doi:10.1093/nar/gkh470 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Fiona M. Roche, Karsten Hokamp, Michael Acab, Lorne A. Babiuk, Robert E. W. Hancock, and Fiona S. L. Brinkman: ProbeLynx: a tool for updating the association of microarray probes to genes
Nucl. Acids Res. 2004 32: W471-W474; doi:10.1093/nar/gkh452 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] OPEN ACCESS ARTICLE

Suresh Karanam and Carlos S. Moreno: CONFAC: automated application of comparative genomic promoter analysis to DNA microarray datasets
Nucl. Acids Res. 2004 32: W475-W484; doi:10.1093/nar/gkh353 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] OPEN ACCESS ARTICLE

Javier Herrero, Juan M. Vaquerizas, Fátima Al-Shahrour, Lucía Conde, Álvaro Mateos, Javier Santoyo Ramón Díaz-Uriarte, and Joaquín Dopazo: New challenges in gene expression data analysis and the extended GEPAS
Nucl. Acids Res. 2004 32: W485-W491; doi:10.1093/nar/gkh421 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Stefano Volinia, Rita Evangelisti, Francesca Francioso, Diego Arcelli, Massimo Carella, and Paolo Gasparini: GOAL: automated Gene Ontology analysis of expression profiles
Nucl. Acids Res. 2004 32: W492-W499; doi:10.1093/nar/gkh443 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Matthias Heinig and Dmitrij Frishman: STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins
Nucl. Acids Res. 2004 32: W500-W502; doi:10.1093/nar/gkh429 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Maxim Shatsky, Oranit Dror, Dina Schneidman-Duhovny, Ruth Nussinov, and Haim J. Wolfson: BioInfo3D: a suite of tools for structural bioinformatics
Nucl. Acids Res. 2004 32: W503-W507; doi:10.1093/nar/gkh413 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

R. Gautier, A.-C. Camproux, and P. Tufféry: SCit: web tools for protein side chain conformation analysis
Nucl. Acids Res. 2004 32: W508-W511; doi:10.1093/nar/gkh388 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Alexander V. Diemand and Holger Scheib: iMolTalk: an interactive, internet-based protein structure analysis server
Nucl. Acids Res. 2004 32: W512-W516; doi:10.1093/nar/gkh403 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Rajesh Nair and Burkhard Rost: LOCnet and LOCtarget: sub-cellular localization for structural genomics targets
Nucl. Acids Res. 2004 32: W517-W521; doi:10.1093/nar/gkh441 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Jun-tao Guo, Kyle Ellrott, Won Jae Chung, Dong Xu, Serguei Passovets, and Ying Xu: PROSPECT-PSPP: an automatic computational pipeline for protein structure prediction
Nucl. Acids Res. 2004 32: W522-W525; doi:10.1093/nar/gkh414 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

David E. Kim, Dylan Chivian, and David Baker: Protein structure prediction and analysis using the Robetta server
Nucl. Acids Res. 2004 32: W526-W531; doi:10.1093/nar/gkh468 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Andrew E. Torda, James B. Procter, and Thomas Huber: Wurst: a protein threading server with a structural scoring function, sequence profiles and optimized substitution matrices
Nucl. Acids Res. 2004 32: W532-W535; doi:10.1093/nar/gkh357 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Jessica Shapiro and Douglas Brutlag: FoldMiner and LOCK 2: protein structure comparison and motif discovery on the web
Nucl. Acids Res. 2004 32: W536-W541; doi:10.1093/nar/gkh389 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Giridhar Chukkapalli, Chittibabu Guda, and Shankar Subramaniam: SledgeHMMER: a web server for batch searching the Pfam database
Nucl. Acids Res. 2004 32: W542-W544; doi:10.1093/nar/gkh395 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Frédéric Guyon, Anne-Claude Camproux, Joëlle Hochez, and Pierre Tufféry: SA-Search: a web tool for protein structure mining based on a Structural Alphabet
Nucl. Acids Res. 2004 32: W545-W548; doi:10.1093/nar/gkh467 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Vladimir A. Ivanisenko, Sergey S. Pintus, Dmitry A. Grigorovich, and Nickolay A. Kolchanov: PDBSiteScan: a program for searching for active, binding and posttranslational modification sites in the 3D structures of proteins
Nucl. Acids Res. 2004 32: W549-W554; doi:10.1093/nar/gkh439 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

T. Andrew Binkowski, Patrick Freeman, and Jie Liang: pvSOAR: detecting similar surface patterns of pocket and void surfaces of amino acid residues on proteins
Nucl. Acids Res. 2004 32: W555-W558; doi:10.1093/nar/gkh390 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Balvinder Singh: PepBuild: a web server for building structure data of peptides/proteins
Nucl. Acids Res. 2004 32: W559-W561; doi:10.1093/nar/gkh472 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Fan Xue, Zhong Gu, and Jin-an Feng: LINKER: a web server to generate peptide sequences with extended conformation
Nucl. Acids Res. 2004 32: W562-W565; doi:10.1093/nar/gkh422 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

William J. Salerno, Samuel M. Seaver, Brian R. Armstrong, and Ishwar Radhakrishnan: MONSTER: inferring non-covalent interactions in macromolecular structures from atomic coordinate data
Nucl. Acids Res. 2004 32: W566-W568; doi:10.1093/nar/gkh434 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Jinfeng Liu and Burkhard Rost: CHOP: parsing proteins into structural domains
Nucl. Acids Res. 2004 32: W569-W571; doi:10.1093/nar/gkh481 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Chi-Ren Shyu, Pin-Hao Chi, Grant Scott, and Dong Xu: ProteinDBS: a real-time retrieval system for protein structure comparison
Nucl. Acids Res. 2004 32: W572-W575; doi:10.1093/nar/gkh436 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Krzysztof Ginalski, Marcin von Grotthuss, Nick V. Grishin, and Leszek Rychlewski: Detecting distant homology with Meta-BASIC
Nucl. Acids Res. 2004 32: W576-W581; doi:10.1093/nar/gkh370 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Yuzhen Ye and Adam Godzik: FATCAT: a web server for flexible structure comparison and structure similarity searching
Nucl. Acids Res. 2004 32: W582-W585; doi:10.1093/nar/gkh430 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Joanna M. Sasin and Janusz M. Bujnicki: COLORADO3D, a web server for the visual analysis of protein structures
Nucl. Acids Res. 2004 32: W586-W589; doi:10.1093/nar/gkh440 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Rajarshi Maiti, Gary H. Van Domselaar, Haiyan Zhang, and David S. Wishart: SuperPose: a simple server for sophisticated structural superposition
Nucl. Acids Res. 2004 32: W590-W594; doi:10.1093/nar/gkh477 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Goran Neshich, Walter Rocchia, Adauto L. Mancini, Michel E. B. Yamagishi, Paula R. Kuser, Renato Fileto, Christian Baudet, Ivan P. Pinto, Arnaldo J. Montagner, Juliana F. Palandrani, Joao N. Krauchenco, Renato C. Torres, Savio Souza, Roberto C. Togawa, and Roberto H. Higa: ^JavaProtein Dossier: a novel web-based data visualization tool for comprehensive analysis of protein structure
Nucl. Acids Res. 2004 32: W595-W601; doi:10.1093/nar/gkh480 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

A. Bhaduri, G. Pugalenthi, N. Gupta, and R. Sowdhamini: iMOT: an interactive package for the selection of spatially interacting motifs
Nucl. Acids Res. 2004 32: W602-W605; doi:10.1093/nar/gkh375 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Jean-Baptiste Claude, Karsten Suhre, Cédric Notredame, Jean-Michel Claverie, and Chantal Abergel: CaspR: a web server for automated molecular replacement using homology modelling
Nucl. Acids Res. 2004 32: W606-W609; doi:10.1093/nar/gkh400 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Karsten Suhre and Yves-Henri Sanejouand: ElNémo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement
Nucl. Acids Res. 2004 32: W610-W614; doi:10.1093/nar/gkh368 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Ian W. Davis, Laura Weston Murray, Jane S. Richardson, and David C. Richardson: MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes
Nucl. Acids Res. 2004 32: W615-W619; doi:10.1093/nar/gkh398 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Neil Maudling and Teresa K. Attwood: FAN: fingerprint analysis of nucleotide sequences
Nucl. Acids Res. 2004 32: W620-W623; doi:10.1093/nar/gkh457 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Tiziana Castrignanò, Alessandro Canali, Giorgio Grillo, Sabino Liuni, Flavio Mignone, and Graziano Pesole: CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison
Nucl. Acids Res. 2004 32: W624-W627; doi:10.1093/nar/gkh486 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Y. L. Orlov and V. N. Potapov: Complexity: an internet resource for analysis of DNA sequence complexity
Nucl. Acids Res. 2004 32: W628-W633; doi:10.1093/nar/gkh466 [Abstract] [FREE Full Text] [Print PDF] [Supplementary Material] OPEN ACCESS ARTICLE

Sven Mika and Burkhard Rost: NLProt: extracting protein names and sequences from papers
Nucl. Acids Res. 2004 32: W634-W637; doi:10.1093/nar/gkh427 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Brian D. Halligan, Victor Ruotti, Weihong Jin, Scott Laffoon, Simon N. Twigger, and Edward A. Dratz: ProMoST (Protein Modification Screening Tool): a web-based tool for mapping protein modifications on two-dimensional gels
Nucl. Acids Res. 2004 32: W638-W644; doi:10.1093/nar/gkh356 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

P. Selvarani, V. Shanthi, C. K. Rajesh, S. Saravanan, and K. Sekar: BSDD: Biomolecules Segment Display Device—a web-based interactive display tool
Nucl. Acids Res. 2004 32: W645-W648; doi:10.1093/nar/gkh420 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Jeff Reneker, Chi-Ren Shyu, Peiyu Zeng, Joseph C. Polacco, and Walter Gassmann: ACMES: fast multiple-genome searches for short repeat sequences with concurrent cross-species information retrieval
Nucl. Acids Res. 2004 32: W649-W653; doi:10.1093/nar/gkh455 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Mikhail Rozanov, Uwe Plikat, Colombe Chappey, Andrey Kochergin, and Tatiana Tatusova: A web-based genotyping resource for viral sequences
Nucl. Acids Res. 2004 32: W654-W659; doi:10.1093/nar/gkh419 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Xiaoli Dong, Paul Stothard, Ian J. Forsythe, and David S. Wishart: PlasMapper: a web server for drawing and auto-annotating plasmid maps
Nucl. Acids Res. 2004 32: W660-W664; doi:10.1093/nar/gkh410 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Todd J. Dolinsky, Jens E. Nielsen, J. Andrew McCammon, and Nathan A. Baker: PDB2PQR: an automated pipeline for the setup of Poisson–Boltzmann electrostatics calculations
Nucl. Acids Res. 2004 32: W665-W667; doi:10.1093/nar/gkh381 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Lee Whitmore and B. A. Wallace: DICHROWEB, an online server for protein secondary structure analyses from circular dichroism spectroscopic data
Nucl. Acids Res. 2004 32: W668-W673; doi:10.1093/nar/gkh371 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Jorge Fernandez-de-Cossio, Luis Javier Gonzalez, Yoshinori Satomi, Lazaro Betancourt, Yassel Ramos, Vivian Huerta, Abel Amaro, Vladimir Besada, Gabriel Padron, Naoto Minamino, and Toshifumi Takao: Isotopica: a tool for the calculation and viewing of complex isotopic envelopes
Nucl. Acids Res. 2004 32: W674-W678; doi:10.1093/nar/gkh423 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

Z. W. Cao, Y. Xue, L. Y. Han, B. Xie, H. Zhou, C. J. Zheng, H. H. Lin, and Y. Z. Chen: MoViES: molecular vibrations evaluation server for analysis of fluctuational dynamics of proteins and nucleic acids
Nucl. Acids Res. 2004 32: W679-W685; doi:10.1093/nar/gkh384 [Abstract] [FREE Full Text] [Print PDF] OPEN ACCESS ARTICLE

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