Nucleic Acids Research

Editorial:

EDITORIAL
Nucl. Acids Res. 2005 33: 6673; doi:10.1093/nar/gki966 [Extract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Articles:

Linhui Julie Su, Christina Waldsich, and Anna Marie Pyle

An obligate intermediate along the slow folding pathway of a group II intron ribozyme
Nucl. Acids Res. 2005 33: 6674-6687; doi:10.1093/nar/gki973 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

Annette MacLeod, Alison Tweedie, Sarah McLellan, Sonya Taylor, Neil Hall, Matthew Berriman, Najib M. El-Sayed, Michelle Hope, C. Michael R. Turner, and Andy Tait

The genetic map and comparative analysis with the physical map of Trypanosoma brucei
Nucl. Acids Res. 2005 33: 6688-6693; doi:10.1093/nar/gki980 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

James Magee and Jim Warwicker

Simulation of non-specific protein–mRNA interactions
Nucl. Acids Res. 2005 33: 6694-6699; doi:10.1093/nar/gki981 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Huafeng Fang, Xuan Yue, Xiaoxu Li, and John-Stephen Taylor

Identification and characterization of high affinity antisense PNAs for the human unr (upstream of N-ras) mRNA which is uniquely overexpressed in MCF-7 breast cancer cells
Nucl. Acids Res. 2005 33: 6700-6711; doi:10.1093/nar/gki968 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Tae-Wook Nam, Young-Ha Park, Hye-Jin Jeong, Sangryeol Ryu, and Yeong-Jae Seok

Glucose repression of the Escherichia coli sdhCDAB operon, revisited: regulation by the CRP·cAMP complex
Nucl. Acids Res. 2005 33: 6712-6722; doi:10.1093/nar/gki978 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Niti Kumar and Souvik Maiti

The effect of osmolytes and small molecule on Quadruplex–WC duplex equilibrium: a fluorescence resonance energy transfer study
Nucl. Acids Res. 2005 33: 6723-6732; doi:10.1093/nar/gki961 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

Mani Larijani, Ahmad Zaheen, Darina Frieder, Yuxun Wang, Gillian E. Wu, Winfried Edelmann, and Alberto Martin

Lack of MSH2 involvement differentiates V(D)J recombination from other non-homologous end joining events
Nucl. Acids Res. 2005 33: 6733-6742; doi:10.1093/nar/gki983 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Ji-Ping Z. Wang and Jonathan Widom

Improved alignment of nucleosome DNA sequences using a mixture model
Nucl. Acids Res. 2005 33: 6743-6755; doi:10.1093/nar/gki977 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Yun-Yong Park, Seung-Won Ahn, Hye-Jin Kim, Jin-Man Kim, In-Kyu Lee, Heonjoong Kang, and Hueng-Sik Choi

An autoregulatory loop controlling orphan nuclear receptor DAX-1 gene expression by orphan nuclear receptor ERR
Nucl. Acids Res. 2005 33: 6756-6768; doi:10.1093/nar/gki976 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Sudha Sharma, Joshua A. Sommers, Ronald K. Gary, Erica Friedrich-Heineken, Ulrich Hübscher, and Robert M. Brosh, Jr

The interaction site of Flap Endonuclease-1 with WRN helicase suggests a coordination of WRN and PCNA
Nucl. Acids Res. 2005 33: 6769-6781; doi:10.1093/nar/gki1002 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

Colleen D. McCabe and Jeffrey W. Innis

A genomic approach to the identification and characterization of HOXA13 functional binding elements
Nucl. Acids Res. 2005 33: 6782-6794; doi:10.1093/nar/gki979 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Geurt Schilders, Reinout Raijmakers, Jos M. H. Raats, and Ger J. M. Pruijn

MPP6 is an exosome-associated RNA-binding protein involved in 5.8S rRNA maturation
Nucl. Acids Res. 2005 33: 6795-6804; doi:10.1093/nar/gki982 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Seong-Chul Kim, Yong-Sik Kim, and Anton M. Jetten

Krüppel-like zinc finger protein Gli-similar 2 (Glis2) represses transcription through interaction with C-terminal binding protein 1 (CtBP1)
Nucl. Acids Res. 2005 33: 6805-6815; doi:10.1093/nar/gki985 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Christoforos Nikolaou and Yannis Almirantis

A study on the correlation of nucleotide skews and the positioning of the origin of replication: different modes of replication in bacterial species
Nucl. Acids Res. 2005 33: 6816-6822; doi:10.1093/nar/gki988 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Daniel J. Weisenberger, Mihaela Campan, Tiffany I. Long, Myungjin Kim, Christian Woods, Emerich Fiala, Melanie Ehrlich, and Peter W. Laird

Analysis of repetitive element DNA methylation by MethyLight
Nucl. Acids Res. 2005 33: 6823-6836; doi:10.1093/nar/gki987 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

John J. Turner, Gabriela D. Ivanova, Birgit Verbeure, Donna Williams, Andrey A. Arzumanov, Saïd Abes, Bernard Lebleu, and Michael J. Gait

Cell-penetrating peptide conjugates of peptide nucleic acids (PNA) as inhibitors of HIV-1 Tat-dependent trans-activation in cells
Nucl. Acids Res. 2005 33: 6837-6849; doi:10.1093/nar/gki991 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

Stéphanie Renaud, Dmitri Loukinov, Fred T. Bosman, Victor Lobanenkov, and Jean Benhattar

CTCF binds the proximal exonic region of hTERT and inhibits its transcription
Nucl. Acids Res. 2005 33: 6850-6860; doi:10.1093/nar/gki989 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Baomin Li, Nathan Conway, Sonia Navarro, Luca Comai, and Lucio Comai

A conserved and species-specific functional interaction between the Werner syndrome-like exonuclease atWEX and the Ku heterodimer in Arabidopsis
Nucl. Acids Res. 2005 33: 6861-6867; doi:10.1093/nar/gki984 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Johannes Grillari, Paul Ajuh, Guido Stadler, Marlies Löscher, Regina Voglauer, Wolfgang Ernst, Janet Chusainow, Frank Eisenhaber, Marion Pokar, Klaus Fortschegger, Martin Grey, Angus I. Lamond, and Hermann Katinger

SNEV is an evolutionarily conserved splicing factor whose oligomerization is necessary for spliceosome assembly
Nucl. Acids Res. 2005 33: 6868-6883; doi:10.1093/nar/gki986 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Bert Schepens, Sandrine A. Tinton, Yanik Bruynooghe, Rudi Beyaert, and Sigrid Cornelis

The polypyrimidine tract-binding protein stimulates HIF-1 IRES-mediated translation during hypoxia
Nucl. Acids Res. 2005 33: 6884-6894; doi:10.1093/nar/gki1000 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Christina A. Ortmann, Andreas Burchert, Katharina Hölzle, Andreas Nitsche, Burghardt Wittig, Andreas Neubauer, and Manuel Schmidt

Down-regulation of interferon regulatory factor 4 gene expression in leukemic cells due to hypermethylation of CpG motifs in the promoter region
Nucl. Acids Res. 2005 33: 6895-6905; doi:10.1093/nar/gki1001 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Chris Proudfoot and Richard McCulloch

Distinct roles for two RAD51-related genes in Trypanosoma brucei antigenic variation
Nucl. Acids Res. 2005 33: 6906-6919; doi:10.1093/nar/gki996 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Ema Kikovska, Nils-Egil Mikkelsen, and Leif A. Kirsebom

The naturally trans-acting ribozyme RNase P RNA has leadzyme properties
Nucl. Acids Res. 2005 33: 6920-6930; doi:10.1093/nar/gki993 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Kathrin Marheineke, Olivier Hyrien, and Torsten Krude

Visualization of bidirectional initiation of chromosomal DNA replication in a human cell free system
Nucl. Acids Res. 2005 33: 6931-6941; doi:10.1093/nar/gki994 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Ekaterina Semenova, Leonid Minakhin, Ekaterina Bogdanova, Maxim Nagornykh, Anatoliy Vasilov, Tomasz Heyduk, Alexander Solonin, Marina Zakharova, and Konstantin Severinov

Transcription regulation of the EcoRV restriction–modification system
Nucl. Acids Res. 2005 33: 6942-6951; doi:10.1093/nar/gki998 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Methods Online:

Chelsey Hilscher, Wolfgang Vahrson, and Dirk P. Dittmer

Faster quantitative real-time PCR protocols may lose sensitivity and show increased variability
Nucl. Acids Res. 2005 33: e182; doi:10.1093/nar/gni181 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Yuker Wang, Martin Moorhead, George Karlin-Neumann, Matthew Falkowski, Chunnuan Chen, Farooq Siddiqui, Ronald W. Davis, Thomas D. Willis, and Malek Faham

Allele quantification using molecular inversion probes (MIP)
Nucl. Acids Res. 2005 33: e183; doi:10.1093/nar/gni177 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

Min Li, Yu-Cheng Lin, Chao-Chin Wu, and Hsiao-Sheng Liu

Enhancing the efficiency of a PCR using gold nanoparticles
Nucl. Acids Res. 2005 33: e184; doi:10.1093/nar/gni183 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Roger A. Hoskins, Mark Stapleton, Reed A. George, Charles Yu, Kenneth H. Wan, Joseph W. Carlson, and Susan E. Celniker

Rapid and efficient cDNA library screening by self-ligation of inverse PCR products (SLIP)
Nucl. Acids Res. 2005 33: e185; doi:10.1093/nar/gni184 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

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