Issue navigation
Volume 33, Issue suppl_1, 1 January 2005
Editorial
Editorial
Alex Bateman
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Page D1, https://doi.org/10.1093/nar/gki133
Articles
Editorial
Dov Greenbaum and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D3–D4, https://doi.org/10.1093/nar/gki134
The Molecular Biology Database Collection: 2005 update
Michael Y. Galperin
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D5–D24, https://doi.org/10.1093/nar/gki139
DDBJ in collaboration with mass-sequencing teams on annotation
Y. Tateno and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D25–D28, https://doi.org/10.1093/nar/gki020
The EMBL Nucleotide Sequence Database
Carola Kanz and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D29–D33, https://doi.org/10.1093/nar/gki098
GenBank
Dennis A. Benson and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D34–D38, https://doi.org/10.1093/nar/gki063
Database resources of the National Center for Biotechnology Information
David L. Wheeler and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D39–D45, https://doi.org/10.1093/nar/gki062
The European Bioinformatics Institute's data resources: towards systems biology
Catherine Brooksbank and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D46–D53, https://doi.org/10.1093/nar/gki026
Entrez Gene: gene-centered information at NCBI
Donna Maglott and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D54–D58, https://doi.org/10.1093/nar/gki031
HOPPSIGEN: a database of human and mouse processed pseudogenes
Khelifi Adel and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D59–D66, https://doi.org/10.1093/nar/gki084
NPRD: Nucleosome Positioning Region Database
Victor G. Levitsky and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D67–D70, https://doi.org/10.1093/nar/gki049
The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes
Y. Lee and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D71–D74, https://doi.org/10.1093/nar/gki064
ECgene: genome annotation for alternative splicing
Pora Kim and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D75–D79, https://doi.org/10.1093/nar/gki118
SpliceInfo: an information repository for mRNA alternative splicing in human genome
Hsien-Da Huang and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D80–D85, https://doi.org/10.1093/nar/gki129
DoOP: Databases of Orthologous Promoters, collections of clusters of orthologous upstream sequences from chordates and plants
Endre Barta and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D86–D90, https://doi.org/10.1093/nar/gki097
The MAPPER database: a multi-genome catalog of putative transcription factor binding sites
Voichita D. Marinescu and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D91–D97, https://doi.org/10.1093/nar/gki103
TRACTOR_DB: a database of regulatory networks in gamma-proteobacterial genomes
Abel D. González and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D98–D102, https://doi.org/10.1093/nar/gki054
TRED: a Transcriptional Regulatory Element Database and a platform for in silico gene regulation studies
Fang Zhao and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D103–D107, https://doi.org/10.1093/nar/gki004
HuSiDa—the human siRNA database: an open-access database for published functional siRNA sequences and technical details of efficient transfer into recipient cells
Matthias Truss and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D108–D111, https://doi.org/10.1093/nar/gki131
NONCODE: an integrated knowledge database of non-coding RNAs
Changning Liu and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D112–D115, https://doi.org/10.1093/nar/gki041
PolyA_DB: a database for mammalian mRNA polyadenylation
Haibo Zhang and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D116–D120, https://doi.org/10.1093/nar/gki055
Rfam: annotating non-coding RNAs in complete genomes
Sam Griffiths-Jones and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D121–D124, https://doi.org/10.1093/nar/gki081
RNAdb—a comprehensive mammalian noncoding RNA database
Ken C. Pang and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D125–D130, https://doi.org/10.1093/nar/gki089
siRNAdb: a database of siRNA sequences
Alistair M. Chalk and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D131–D134, https://doi.org/10.1093/nar/gki136
The Small Subunit rRNA Modification Database
James A. McCloskey and Jef Rozenski
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D135–D138, https://doi.org/10.1093/nar/gki015
Compilation of tRNA sequences and sequences of tRNA genes
Mathias Sprinzl and Konstantin S. Vassilenko
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D139–D140, https://doi.org/10.1093/nar/gki012
UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs
Flavio Mignone and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D141–D146, https://doi.org/10.1093/nar/gki021
PA-GOSUB: a searchable database of model organism protein sequences with their predicted Gene Ontology molecular function and subcellular localization
Paul Lu and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D147–D153, https://doi.org/10.1093/nar/gki120
The Universal Protein Resource (UniProt)
Amos Bairoch and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D154–D159, https://doi.org/10.1093/nar/gki070
NMPdb: Database of Nuclear Matrix Proteins
Sven Mika and Burkhard Rost
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D160–D163, https://doi.org/10.1093/nar/gki132
PSORTdb: a protein subcellular localization database for bacteria
Sébastien Rey and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D164–D168, https://doi.org/10.1093/nar/gki027
SPD—a web-based secreted protein database
Yunjia Chen and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D169–D173, https://doi.org/10.1093/nar/gki093
TPMD: a database and resources of microsatellite marker genotyped in Taiwanese populations
Ya-Hui Chang and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D174–D177, https://doi.org/10.1093/nar/gki102
eBLOCKs: enumerating conserved protein blocks to achieve maximal sensitivity and specificity
Qiaojuan Jane Su and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D178–D182, https://doi.org/10.1093/nar/gki060
PDBSite: a database of the 3D structure of protein functional sites
Vladimir A. Ivanisenko and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D183–D187, https://doi.org/10.1093/nar/gki105
ADDA: a domain database with global coverage of the protein universe
Andreas Heger and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D188–D191, https://doi.org/10.1093/nar/gki096
CDD: a Conserved Domain Database for protein classification
Aron Marchler-Bauer and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D192–D196, https://doi.org/10.1093/nar/gki069
FunShift: a database of function shift analysis on protein subfamilies
Saraswathi Abhiman and Erik L. L. Sonnhammer
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D197–D200, https://doi.org/10.1093/nar/gki067
InterPro, progress and status in 2005
Nicola J. Mulder and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D201–D205, https://doi.org/10.1093/nar/gki106
PRECISE: a Database of Predicted and Consensus Interaction Sites in Enzymes
Shu-Hsien Sheu and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D206–D211, https://doi.org/10.1093/nar/gki091
The ProDom database of protein domain families: more emphasis on 3D
Catherine Bru and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D212–D215, https://doi.org/10.1093/nar/gki034
ProtoNet 4.0: A hierarchical classification of one million protein sequences
Noam Kaplan and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D216–D218, https://doi.org/10.1093/nar/gki007
S4: structure-based sequence alignments of SCOP superfamilies
James Casbon and Mansoor A. S. Saqi
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D219–D222, https://doi.org/10.1093/nar/gki043
The SBASE domain sequence resource, release 12: prediction of protein domain-architecture using support vector machines
Kristian Vlahoviček and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D223–D225, https://doi.org/10.1093/nar/gki112
The SYSTERS Protein Family Database in 2005
Thomas Meinel and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D226–D229, https://doi.org/10.1093/nar/gki030
REBASE—restriction enzymes and DNA methyltransferases
Richard J. Roberts and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D230–D232, https://doi.org/10.1093/nar/gki029
The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema
Nita Deshpande and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D233–D237, https://doi.org/10.1093/nar/gki057
PDB-Ligand: a ligand database based on PDB for the automated and customized classification of ligand-binding structures
Jae-Min Shin and Doo-Ho Cho
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D238–D241, https://doi.org/10.1093/nar/gki059
Carbohydrate Structure Suite (CSS): analysis of carbohydrate 3D structures derived from the PDB
Thomas Lütteke and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D242–D246, https://doi.org/10.1093/nar/gki013
The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis
Frances Pearl and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D247–D251, https://doi.org/10.1093/nar/gki024
GenDiS: Genomic Distribution of protein structural domain Superfamilies
Ganesan Pugalenthi and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D252–D255, https://doi.org/10.1093/nar/gki087
IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes
Véronique Giudicelli and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D256–D261, https://doi.org/10.1093/nar/gki010
E-MSD: an integrated data resource for bioinformatics
S. Velankar and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D262–D265, https://doi.org/10.1093/nar/gki058
PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids
Roman A. Laskowski and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D266–D268, https://doi.org/10.1093/nar/gki001
STING Report: convenient web-based application for graphic and tabular presentations of protein sequence, structure and function descriptors from the STING database
Goran Neshich and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D269–D274, https://doi.org/10.1093/nar/gki111
PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank
Gábor E. Tusnády and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D275–D278, https://doi.org/10.1093/nar/gki002
PFD: a database for the investigation of protein folding kinetics and stability
Kate F. Fulton and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D279–D283, https://doi.org/10.1093/nar/gki016
The PANTHER database of protein families, subfamilies, functions and pathways
Huaiyu Mi and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D284–D288, https://doi.org/10.1093/nar/gki078
Biomedical term mapping databases
Jonathan D. Wren and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D289–D293, https://doi.org/10.1093/nar/gki137
The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis
J. R. Cole and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D294–D296, https://doi.org/10.1093/nar/gki038
Integr8 and Genome Reviews: integrated views of complete genomes and proteomes
Paul Kersey and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D297–D302, https://doi.org/10.1093/nar/gki039
PartiGeneDB—collating partial genomes
José M. Peregrín-Alvarez and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D303–D307, https://doi.org/10.1093/nar/gki109
The PEDANT genome database in 2005
M. Louise Riley and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D308–D310, https://doi.org/10.1093/nar/gki019
Poxvirus Bioinformatics Resource Center: a comprehensive Poxviridae informational and analytical resource
Elliot J. Lefkowitz and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D311–D316, https://doi.org/10.1093/nar/gki110
BacMap: an interactive picture atlas of annotated bacterial genomes
Paul Stothard and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D317–D320, https://doi.org/10.1093/nar/gki075
Metagrowth: a new resource for the building of metabolic hypotheses in microbiology
Hiroyuki Ogata and Jean-Michel Claverie
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D321–D324, https://doi.org/10.1093/nar/gki042
VFDB: a reference database for bacterial virulence factors
Lihong Chen and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D325–D328, https://doi.org/10.1093/nar/gki008
Echo BASE: an integrated post-genomic database for Escherichia coli
Raju V. Misra and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D329–D333, https://doi.org/10.1093/nar/gki028
EcoCyc: a comprehensive database resource for Escherichia coli
Ingrid M. Keseler and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D334–D337, https://doi.org/10.1093/nar/gki108
Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation
Geoffrey L. Winsor and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D338–D343, https://doi.org/10.1093/nar/gki047
The Diatom EST Database
Uma Maheswari and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D344–D347, https://doi.org/10.1093/nar/gki121
The Ashbya Genome Database (AGD)—a tool for the yeast community and genome biologists
Leandro Hermida and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D348–D352, https://doi.org/10.1093/nar/gki009
CandidaDB: a genome database for Candida albicans pathogenomics
C. d'Enfert and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D353–D357, https://doi.org/10.1093/nar/gki124
The Candida Genome Database (CGD), a community resource for Candida albicans gene and protein information
Martha B. Arnaud and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D358–D363, https://doi.org/10.1093/nar/gki003
CYGD: the Comprehensive Yeast Genome Database
U. Güldener and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D364–D368, https://doi.org/10.1093/nar/gki053
PROPHECY—a database for high-resolution phenomics
Luciano Fernandez-Ricaud and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D369–D373, https://doi.org/10.1093/nar/gki126
Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD)
Rama Balakrishnan and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D374–D377, https://doi.org/10.1093/nar/gki023
The Yeast Resource Center Public Data Repository
Michael Riffle and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D378–D382, https://doi.org/10.1093/nar/gki073
WormBase: a comprehensive data resource for Caenorhabditis biology and genomics
Nansheng Chen and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D383–D389, https://doi.org/10.1093/nar/gki066
FlyBase: genes and gene models
Rachel A. Drysdale and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D390–D395, https://doi.org/10.1093/nar/gki046
MDS_IES_DB: a database of macronuclear and micronuclear genes in spirotrichous ciliates
Andre R. O. Cavalcanti and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D396–D398, https://doi.org/10.1093/nar/gki130
SilkDB: a knowledgebase for silkworm biology and genomics
Jing Wang and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D399–D402, https://doi.org/10.1093/nar/gki116
SilkSatDb: a microsatellite database of the silkworm, Bombyx mori
M. D. Prasad and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D403–D406, https://doi.org/10.1093/nar/gki099
EzCatDB: the Enzyme Catalytic-mechanism Database
Nozomi Nagano
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D407–D412, https://doi.org/10.1093/nar/gki080
3did: interacting protein domains of known three-dimensional structure
Amelie Stein and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D413–D417, https://doi.org/10.1093/nar/gki037
The Biomolecular Interaction Network Database and related tools 2005 update
C. Alfarano and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D418–D424, https://doi.org/10.1093/nar/gki051
GeneNet in 2005
E. A. Ananko and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D425–D427, https://doi.org/10.1093/nar/gki077
Reactome: a knowledgebase of biological pathways
G. Joshi-Tope and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D428–D432, https://doi.org/10.1093/nar/gki072
STRING: known and predicted protein–protein associations, integrated and transferred across organisms
Christian von Mering and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D433–D437, https://doi.org/10.1093/nar/gki005
ChickVD: a sequence variation database for the chicken genome
Jing Wang and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D438–D441, https://doi.org/10.1093/nar/gki092
DED: Database of Evolutionary Distances
Vamsi Veeramachaneni and Wojciech Makałowski
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D442–D446, https://doi.org/10.1093/nar/gki094
Ensembl 2005
T. Hubbard and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D447–D453, https://doi.org/10.1093/nar/gki138
The UCSC Proteome Browser
Fan Hsu and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D454–D458, https://doi.org/10.1093/nar/gki100
The Vertebrate Genome Annotation (Vega) database
J. L. Ashurst and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D459–D465, https://doi.org/10.1093/nar/gki135
Improvements to GALA and dbERGE II: databases featuring genomic sequence alignment, annotation and experimental results
Laura Elnitski and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D466–D470, https://doi.org/10.1093/nar/gki045
The Mouse Genome Database (MGD): from genes to mice—a community resource for mouse biology
Janan T. Eppig and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D471–D475, https://doi.org/10.1093/nar/gki113
Inparanoid: a comprehensive database of eukaryotic orthologs
Kevin P. O'Brien and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D476–D480, https://doi.org/10.1093/nar/gki107
Polymorphix: a sequence polymorphism database
Eric Bazin and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D481–D484, https://doi.org/10.1093/nar/gki076
The Rat Genome Database (RGD): developments towards a phenome database
Norberto de la Cruz and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D485–D491, https://doi.org/10.1093/nar/gki050
RatMap—rat genome tools and data
Greta Petersen and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D492–D494, https://doi.org/10.1093/nar/gki125
The Adaptive Evolution Database (TAED): a phylogeny based tool for comparative genomics
Christian Roth and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D495–D497, https://doi.org/10.1093/nar/gki090
L1Base: from functional annotation to prediction of active LINE-1 elements
Tobias Penzkofer and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D498–D500, https://doi.org/10.1093/nar/gki044
NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
Kim D. Pruitt and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D501–D504, https://doi.org/10.1093/nar/gki025
DG-CST (Disease Gene Conserved Sequence Tags), a database of human–mouse conserved elements associated to disease genes
Angelo Boccia and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D505–D510, https://doi.org/10.1093/nar/gki011
HCAD, closing the gap between breakpoints and genes
Robert Hoffmann and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D511–D513, https://doi.org/10.1093/nar/gki061
Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders
Ada Hamosh and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D514–D517, https://doi.org/10.1093/nar/gki033
FESD: a Functional Element SNPs Database in human
Hyo Jin Kang and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D518–D522, https://doi.org/10.1093/nar/gki082
IPD—the Immuno Polymorphism Database
James Robinson and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D523–D526, https://doi.org/10.1093/nar/gki032
SNPeffect: a database mapping molecular phenotypic effects of human non-synonymous coding SNPs
Joke Reumers and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D527–D532, https://doi.org/10.1093/nar/gki086
Cancer gene expression database (CGED): a database for gene expression profiling with accompanying clinical information of human cancer tissues
Kikuya Kato and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D533–D536, https://doi.org/10.1093/nar/gki117
HAGR: the Human Ageing Genomic Resources
João Pedro de Magalhães and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D537–D543, https://doi.org/10.1093/nar/gki017
T1DBase, a community web-based resource for type 1 diabetes research
Luc J. Smink and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D544–D549, https://doi.org/10.1093/nar/gki095
5′SAGE: 5′-end Serial Analysis of Gene Expression database
Yasuhiro Kasai and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D550–D552, https://doi.org/10.1093/nar/gki085
ArrayExpress—a public repository for microarray gene expression data at the EBI
H. Parkinson and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D553–D555, https://doi.org/10.1093/nar/gki056
GeneTide—Terra Incognita Discovery Endeavor: a new transcriptome focused member of the GeneCards/GeneNote suite of databases
Maxim Shklar and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D556–D561, https://doi.org/10.1093/nar/gki122
NCBI GEO: mining millions of expression profiles—database and tools
Tanya Barrett and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D562–D566, https://doi.org/10.1093/nar/gki022
The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms
Motohiko Tanino and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D567–D572, https://doi.org/10.1093/nar/gki104
SIEGE: Smoking Induced Epithelial Gene Expression Database
Vishal Shah and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D573–D579, https://doi.org/10.1093/nar/gki035
The Stanford Microarray Database accommodates additional microarray platforms and data formats
Catherine A. Ball and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D580–D582, https://doi.org/10.1093/nar/gki006
DynaProt 2D: an advanced proteomic database for dynamic online access to proteomes and two-dimensional electrophoresis gels
Oliver Drews and Angelika Görg
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D583–D587, https://doi.org/10.1093/nar/gki101
MetaRouter: bioinformatics for bioremediation
Florencio Pazos and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D588–D592, https://doi.org/10.1093/nar/gki068
IMGT, the international ImMunoGeneTics information system ®
Marie-Paule Lefranc and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D593–D597, https://doi.org/10.1093/nar/gki065
Organelle DB: a cross-species database of protein localization and function
Nuwee Wiwatwattana and Anuj Kumar
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D598–D604, https://doi.org/10.1093/nar/gki071
AMPDB: the Arabidopsis Mitochondrial Protein Database
Joshua L. Heazlewood and A. Harvey Millar
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D605–D610, https://doi.org/10.1093/nar/gki048
MITOMAP: a human mitochondrial genome database—2004 update
Marty C. Brandon and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D611–D613, https://doi.org/10.1093/nar/gki079
BarleyBase—an expression profiling database for plant genomics
Lishuang Shen and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D614–D618, https://doi.org/10.1093/nar/gki123
CR-EST: a resource for crop ESTs
C. Künne and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D619–D621, https://doi.org/10.1093/nar/gki119
openSputnik—a database to ESTablish comparative plant genomics using unsaturated sequence collections
Stephen Rudd
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D622–D627, https://doi.org/10.1093/nar/gki040
PlantMarkers—a database of predicted molecular markers from plants
Stephen Rudd and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D628–D632, https://doi.org/10.1093/nar/gki074
Arabidopsis nucleolar protein database (AtNoPDB)
John W. S. Brown and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D633–D636, https://doi.org/10.1093/nar/gki052
ASRP: the Arabidopsis Small RNA Project Database
Adam M. Gustafson and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D637–D640, https://doi.org/10.1093/nar/gki127
GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts
Sébastien Aubourg and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D641–D646, https://doi.org/10.1093/nar/gki115
RARGE: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome
Tetsuya Sakurai and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D647–D650, https://doi.org/10.1093/nar/gki014
Rice Annotation Database (RAD): a contig-oriented database for map-based rice genomics
Yuichi Ito and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D651–D655, https://doi.org/10.1093/nar/gki083
Brassica ASTRA: an integrated database for Brassica genomic research
Christopher G. Love and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D656–D659, https://doi.org/10.1093/nar/gki036
The Legume Information System (LIS): an integrated information resource for comparative legume biology
Michael D. Gonzales and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D660–D665, https://doi.org/10.1093/nar/gki128
PoMaMo—a comprehensive database for potato genome data
Svenja Meyer and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D666–D670, https://doi.org/10.1093/nar/gki018
VBASE2, an integrative V gene database
Ida Retter and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D671–D674, https://doi.org/10.1093/nar/gki088
Oracle Database 10 g : a platform for BLAST search and Regular Expression pattern matching in life sciences
Susie M. Stephens and others
Nucleic Acids Research, Volume 33, Issue suppl_1, 1 January 2005, Pages D675–D679, https://doi.org/10.1093/nar/gki114
Advertisement
Advertisement