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Previous Next 		Contents: Volume 34, Number 13, 2006    [Index by Author] 
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To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

Articles:Back

Elzbieta Kierzek, David H. Mathews, Anna Ciesielska, Douglas H. Turner, and Ryszard Kierzek
Nearest neighbor parameters for Watson–Crick complementary heteroduplexes formed between 2'-O-methyl RNA and RNA oligonucleotides
Nucl. Acids Res. 2006 34: 3609-3614; doi:10.1093/nar/gkl232 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Galina M. Proshkina, Elena K. Shematorova, Sergey A. Proshkin, Cécile Zaros, Pierre Thuriaux, and George V. Shpakovski
Ancient origin, functional conservation and fast evolution of DNA-dependent RNA polymerase III
Nucl. Acids Res. 2006 34: 3615-3624; doi:10.1093/nar/gkl421 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Julian Gough
Genomic scale sub-family assignment of protein domains
Nucl. Acids Res. 2006 34: 3625-3633; doi:10.1093/nar/gkl484 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Cyril Dominguez and Frédéric H.-T. Allain
NMR structure of the three quasi RNA recognition motifs (qRRMs) of human hnRNP F and interaction studies with Bcl-x G-tract RNA: a novel mode of RNA recognition
Nucl. Acids Res. 2006 34: 3634-3645; doi:10.1093/nar/gkl488 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

Jinn-Moon Yang and Chi-Hua Tung
Protein structure database search and evolutionary classification
Nucl. Acids Res. 2006 34: 3646-3659; doi:10.1093/nar/gkl395 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary data] [Request Permissions]  

Philippe Simon, Didier Gasparutto, Serge Gambarelli, Christine Saint-Pierre, Alain Favier, and Jean Cadet
Formation of isodialuric acid lesion within DNA oligomers via one-electron oxidation of 5-hydroxyuracil: characterization, stability and excision repair
Nucl. Acids Res. 2006 34: 3660-3669; doi:10.1093/nar/gkl496 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Xi Li, Yinghua Peng, and Xiaogang Qu
Carbon nanotubes selective destabilization of duplex and triplex DNA and inducing B–A transition in solution
Nucl. Acids Res. 2006 34: 3670-3676; doi:10.1093/nar/gkl513 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Raphaël Kiekens, Annelies Vercauteren, Beatrijs Moerkerke, Els Goetghebeur, Hilde Van Den Daele, Roel Sterken, Martin Kuiper, Fred van Eeuwijk, and Marnik Vuylsteke
Genome-wide screening for cis-regulatory variation using a classical diallel crossing scheme
Nucl. Acids Res. 2006 34: 3677-3686; doi:10.1093/nar/gkl510 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary data] [Request Permissions]  

M. L. Green and P. D. Karp
The outcomes of pathway database computations depend on pathway ontology
Nucl. Acids Res. 2006 34: 3687-3697; doi:10.1093/nar/gkl438 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [supplementary data] [Request Permissions]  

Shide Liang, Chi Zhang, Song Liu, and Yaoqi Zhou
Protein binding site prediction using an empirical scoring function
Nucl. Acids Res. 2006 34: 3698-3707; doi:10.1093/nar/gkl454 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Alexandre V. Pertzev and Allen W. Nicholson
Characterization of RNA sequence determinants and antideterminants of processing reactivity for a minimal substrate of Escherichia coli ribonuclease III
Nucl. Acids Res. 2006 34: 3708-3721; doi:10.1093/nar/gkl459 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Naoya Shikazono, Colin Pearson, Peter O'Neill, and John Thacker
The roles of specific glycosylases in determining the mutagenic consequences of clustered DNA base damage
Nucl. Acids Res. 2006 34: 3722-3730; doi:10.1093/nar/gkl503 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Sandrine Castella, David Burgin, and Cyril M. Sanders
Role of ATP hydrolysis in the DNA translocase activity of the bovine papillomavirus (BPV-1) E1 helicase
Nucl. Acids Res. 2006 34: 3731-3741; doi:10.1093/nar/gkl554 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Michael L. Hayes, Martha L. Reed, Carla E. Hegeman, and Maureen R. Hanson
Sequence elements critical for efficient RNA editing of a tobacco chloroplast transcript in vivo and in vitro
Nucl. Acids Res. 2006 34: 3742-3754; doi:10.1093/nar/gkl490 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Xiaoching Zhao, Hua Shi, Aarti Sevilimedu, Nicole Liachko, Hillary C. M. Nelson, and John T. Lis
An RNA aptamer that interferes with the DNA binding of the HSF transcription activator
Nucl. Acids Res. 2006 34: 3755-3761; doi:10.1093/nar/gkl470 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Michael Carpenter, Pradeep Divvela, Vera Pingoud, Janusz Bujnicki, and Ashok S. Bhagwat
Sequence-dependent enhancement of hydrolytic deamination of cytosines in DNA by the restriction enzyme PspGI
Nucl. Acids Res. 2006 34: 3762-3770; doi:10.1093/nar/gkl545 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Suzanne M. Paley and Peter D. Karp
The Pathway Tools cellular overview diagram and Omics Viewer
Nucl. Acids Res. 2006 34: 3771-3778; doi:10.1093/nar/gkl334 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

D. Soeria-Atmadja, T. Lundell, M. G. Gustafsson, and U. Hammerling
Computational detection of allergenic proteins attains a new level of accuracy with in silico variable-length peptide extraction and machine learning
Nucl. Acids Res. 2006 34: 3779-3793; doi:10.1093/nar/gkl467 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Naoko Shimada, Hiroki Matsudo, Kyoichi Osano, Hiroshi Arakawa, Jean-Marie Buerstedde, Yasuyuki Matsumoto, Kozue Chayahara, Atsushi Torihata, and Masao Ono
Activation of the chicken Ig-ß locus by the collaboration of scattered regulatory regions through changes in chromatin structure
Nucl. Acids Res. 2006 34: 3794-3802; doi:10.1093/nar/gkl469 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Aurel Strat, Lu Gao, Tada Utsuki, Bing Cheng, Sam Nuthalapaty, J. Mike Mathis, Yoshinobu Odaka, and Tony Giordano
Specific and nontoxic silencing in mammalian cells with expressed long dsRNAs
Nucl. Acids Res. 2006 34: 3803-3810; doi:10.1093/nar/gkl532 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Asako Minagawa, Hiroaki Takaku, Ryohei Ishii, Masamichi Takagi, Shigeyuki Yokoyama, and Masayuki Nashimoto
Identification by Mn2+ rescue of two residues essential for the proton transfer of tRNase Z catalysis
Nucl. Acids Res. 2006 34: 3811-3818; doi:10.1093/nar/gkl517 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Kumar M. R. Bhat, Nityanand Maddodi, Cooduvalli Shashikant, and Vijayasaradhi Setaluri
Transcriptional regulation of human MAP2 gene in melanoma: role of neuronal bHLH factors and Notch1 signaling
Nucl. Acids Res. 2006 34: 3819-3832; doi:10.1093/nar/gkl476 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Methods Online:Back

Nicole Marmé, Achim Friedrich, Matthias Müller, Oliver Nolte, Jürgen Wolfrum, Jörg D. Hoheisel, Markus Sauer, and Jens-Peter Knemeyer
Identification of single-point mutations in mycobacterial 16S rRNA sequences by confocal single-molecule fluorescence spectroscopy
Nucl. Acids Res. 2006 34: e90; doi:10.1093/nar/gkl495 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Akiko Zembutsu and Shou Waga
De novo assembly of genuine replication forks on an immobilized circular plasmid in Xenopus egg extracts
Nucl. Acids Res. 2006 34: e91; doi:10.1093/nar/gkl512 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Franck Toledo, Chung-Wen Liu, Crystal J. Lee, and Geoffrey M. Wahl
RMCE-ASAP: a gene targeting method for ES and somatic cells to accelerate phenotype analyses
Nucl. Acids Res. 2006 34: e92; doi:10.1093/nar/gkl518 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Nobuhiko Hiramatsu, Ayumi Kasai, Kunihiro Hayakawa, Jian Yao, and Masanori Kitamura
Real-time detection and continuous monitoring of ER stress in vitro and in vivo by ES-TRAP: evidence for systemic, transient ER stress during endotoxemia
Nucl. Acids Res. 2006 34: e93; doi:10.1093/nar/gkl515 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Yu Fu, Songyun Xu, Chensong Pan, Mingliang Ye, Hanfa Zou, and Baochuan Guo
A matrix of 3,4-diaminobenzophenone for the analysis of oligonucleotides by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
Nucl. Acids Res. 2006 34: e94; doi:10.1093/nar/gkl509 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Deborah Pye, Dimitra S. Kyriakouli, Geoffrey A. Taylor, Riem Johnson, Matthias Elstner, Brigitte Meunier, Zofia M. A. Chrzanowska-Lightowlers, Robert W. Taylor, Douglass M. Turnbull, and Robert N. Lightowlers
Production of transmitochondrial cybrids containing naturally occurring pathogenic mtDNA variants
Nucl. Acids Res. 2006 34: e95; doi:10.1093/nar/gkl516 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary data] [Request Permissions]  

Helle F. Jørgensen, Karen Adie, Pascal Chaubert, and Adrian P. Bird
Engineering a high-affinity methyl-CpG-binding protein
Nucl. Acids Res. 2006 34: e96; doi:10.1093/nar/gkl527 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Yuki Hasegawa, Shiro Fukuda, Kazuro Shimokawa, Shinji Kondo, Norihiro Maeda, and Yoshihide Hayashizaki
A RecA-mediated exon profiling method
Nucl. Acids Res. 2006 34: e97; doi:10.1093/nar/gkl497 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary data] [Request Permissions]  

Yan Xu, Hyun-jin Kim, Ann Kays, Jared Rice, and Huimin Kong
Simultaneous amplification and screening of whole plasmids using the T7 bacteriophage replisome
Nucl. Acids Res. 2006 34: e98; doi:10.1093/nar/gkl547 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Bradley J. Till, Troy Zerr, Elisabeth Bowers, Elizabeth A. Greene, Luca Comai, and Steven Henikoff
High-throughput discovery of rare human nucleotide polymorphisms by Ecotilling
Nucl. Acids Res. 2006 34: e99; doi:10.1093/nar/gkl479 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary data] [Request Permissions]  

To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.