Nucleic Acids Research

Articles:

Stuart Linn

Lawrence Grossman (1924–2006)
Nucl. Acids Res. 2006 34: 1083; doi:10.1093/nar/gkj505 [Extract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Eugene S. Han, Deani L. Cooper, Nicole S. Persky, Vincent A. Sutera, Jr, Richard D. Whitaker, Melissa L. Montello, and Susan T. Lovett

RecJ exonuclease: substrates, products and interaction with SSB
Nucl. Acids Res. 2006 34: 1084-1091; doi:10.1093/nar/gkj503 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Haruna Tsukioka, Masateru Takahashi, Hiroaki Mon, Kazuhiro Okano, Kazuei Mita, Toru Shimada, Jae Man Lee, Yutaka Kawaguchi, Katsumi Koga, and Takahiro Kusakabe

Role of the silkworm argonaute2 homolog gene in double-strand break repair of extrachromosomal DNA
Nucl. Acids Res. 2006 34: 1092-1101; doi:10.1093/nar/gkj507 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

John P. McDonald, Ashley Hall, Didier Gasparutto, Jean Cadet, Jack Ballantyne, and Roger Woodgate

Novel thermostable Y-family polymerases: applications for the PCR amplification of damaged or ancient DNAs
Nucl. Acids Res. 2006 34: 1102-1111; doi:10.1093/nar/gkj512 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Marko Jovanovic and William S. Dynan

Terminal DNA structure and ATP influence binding parameters of the DNA-dependent protein kinase at an early step prior to DNA synapsis
Nucl. Acids Res. 2006 34: 1112-1120; doi:10.1093/nar/gkj504 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Benu Brata Das, Nilkantha Sen, Amit Roy, Somdeb Bose Dasgupta, Agneyo Ganguly, Bikash Chandra Mohanta, Biswanath Dinda, and Hemanta K. Majumder

Differential induction of Leishmania donovani bi-subunit topoisomerase I–DNA cleavage complex by selected flavones and camptothecin: activity of flavones against camptothecin-resistant topoisomerase I
Nucl. Acids Res. 2006 34: 1121-1132; doi:10.1093/nar/gkj502 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Zehua Chen and Thomas D. Schneider

Comparative analysis of tandem T7-like promoter containing regions in enterobacterial genomes reveals a novel group of genetic islands
Nucl. Acids Res. 2006 34: 1133-1147; doi:10.1093/nar/gkj511 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

Catherine R. Barker, Anne V. McNamara, Stephen A. Rackstraw, David E. Nelson, Mike R. White, Alastair J. M. Watson, and John R. Jenkins

Inhibition of Hsp90 acts synergistically with topoisomerase II poisons to increase the apoptotic killing of cells due to an increase in topoisomerase II mediated DNA damage
Nucl. Acids Res. 2006 34: 1148-1157; doi:10.1093/nar/gkj516 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

J. Xu, M. C. Kiel, A. Golshani, J. G. Chosay, H. Aoki, and M. C. Ganoza

Molecular localization of a ribosome-dependent ATPase on Escherichia coli ribosomes
Nucl. Acids Res. 2006 34: 1158-1165; doi:10.1093/nar/gkj508 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Manuel Llinás, Zbynek Bozdech, Edith D. Wong, Alex T. Adai, and Joseph L. DeRisi

Comparative whole genome transcriptome analysis of three Plasmodium falciparum strains
Nucl. Acids Res. 2006 34: 1166-1173; doi:10.1093/nar/gkj517 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

M. Wang and K. A. Hudak

A novel interaction of pokeweed antiviral protein with translation initiation factors 4G and iso4G: a potential indirect mechanism to access viral RNAs
Nucl. Acids Res. 2006 34: 1174-1181; doi:10.1093/nar/gkj520 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Rachna Goyal, Richard Reinhardt, and Albert Jeltsch

Accuracy of DNA methylation pattern preservation by the Dnmt1 methyltransferase
Nucl. Acids Res. 2006 34: 1182-1188; doi:10.1093/nar/gkl002 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Ken-ichi Shinohara, Shunta Sasaki, Masafumi Minoshima, Toshikazu Bando, and Hiroshi Sugiyama

Alkylation of template strand of coding region causes effective gene silencing
Nucl. Acids Res. 2006 34: 1189-1195; doi:10.1093/nar/gkl005 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Evan A. Farkash, Gary D. Kao, Shane R. Horman, and Eline T. Luning Prak

Gamma radiation increases endonuclease-dependent L1 retrotransposition in a cultured cell assay
Nucl. Acids Res. 2006 34: 1196-1204; doi:10.1093/nar/gkj522 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Karen T. Smith, Robert D. Nicholls, and Daniel Reines

The gene encoding the fragile X RNA-binding protein is controlled by nuclear respiratory factor 2 and the CREB family of transcription factors
Nucl. Acids Res. 2006 34: 1205-1215; doi:10.1093/nar/gkj521 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Sengthong Chanchevalap, Mandayam O. Nandan, Beth B. McConnell, Laetitia Charrier, Didier Merlin, Jonathan P. Katz, and Vincent W. Yang

Krüppel-like factor 5 is an important mediator for lipopolysaccharide-induced proinflammatory response in intestinal epithelial cells
Nucl. Acids Res. 2006 34: 1216-1223; doi:10.1093/nar/gkl014 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Ruiqing Yang, David J. Weber, and France Carrier

Post-transcriptional regulation of thioredoxin by the stress inducible heterogenous ribonucleoprotein A18
Nucl. Acids Res. 2006 34: 1224-1236; doi:10.1093/nar/gkj519 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Zsolt Toth, Peter Lischka, and Thomas Stamminger

RNA-binding of the human cytomegalovirus transactivator protein UL69, mediated by arginine-rich motifs, is not required for nuclear export of unspliced RNA
Nucl. Acids Res. 2006 34: 1237-1249; doi:10.1093/nar/gkl007 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Xiaoxing Wang, Sek-Man Wong, and D. X. Liu

Identification of Hepta- and Octo-Uridine stretches as sole signals for programmed +1 and –1 ribosomal frameshifting during translation of SARS-CoV ORF 3a variants
Nucl. Acids Res. 2006 34: 1250-1260; doi:10.1093/nar/gkl017 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Ping Ma, Cristian I. Castillo-Davis, Wenxuan Zhong, and Jun S. Liu

A data-driven clustering method for time course gene expression data
Nucl. Acids Res. 2006 34: 1261-1269; doi:10.1093/nar/gkl013 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Michal Legiewicz, Agnieszka Wichlacz, Bartosz Brzezicha, and Jerzy Ciesiolka

Antigenomic delta ribozyme variants with mutations in the catalytic core obtained by the in vitro selection method
Nucl. Acids Res. 2006 34: 1270-1280; doi:10.1093/nar/gkl018 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Melanie Cole, Carolin Nolte, and Wolfgang Werr

Nuclear import of the transcription factor SHOOT MERISTEMLESS depends on heterodimerization with BLH proteins expressed in discrete sub-domains of the shoot apical meristem of Arabidopsis thaliana
Nucl. Acids Res. 2006 34: 1281-1292; doi:10.1093/nar/gkl016 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Shelton S. Bradrick, Robert W. Walters, and Matthias Gromeier

The hepatitis C virus 3'-untranslated region or a poly(A) tract promote efficient translation subsequent to the initiation phase
Nucl. Acids Res. 2006 34: 1293-1303; doi:10.1093/nar/gkl019 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Methods Online:

Emma Meaburn, Lee M. Butcher, Leonard C. Schalkwyk, and Robert Plomin

Genotyping pooled DNA using 100K SNP microarrays: a step towards genomewide association scans
Nucl. Acids Res. 2006 34: e28; doi:10.1093/nar/gnj027 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Gregory S. Couch, Donna K. Hendrix, and Thomas E. Ferrin

Nucleic acid visualization with UCSF Chimera
Nucl. Acids Res. 2006 34: e29; doi:10.1093/nar/gnj031 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

Ryota Fujii, Motomitsu Kitaoka, and Kiyoshi Hayashi

RAISE: a simple and novel method of generating random insertion and deletion mutations
Nucl. Acids Res. 2006 34: e30; doi:10.1093/nar/gnj032 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Wellington Martins, Daniel de Sousa, Karina Proite, Patrícia Guimarães, Marcio Moretzsohn, and David Bertioli

New softwares for automated microsatellite marker development
Nucl. Acids Res. 2006 34: e31; doi:10.1093/nar/gnj030 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

Fabrizio Cattaruzza, Antonio Cricenti, Alberto Flamini, Marco Girasole, Giovanni Longo, Tommaso Prosperi, Giuseppina Andreano, Luciano Cellai, and Emanuele Chirivino

Controlled loading of oligodeoxyribonucleotide monolayers onto unoxidized crystalline silicon; fluorescence-based determination of the surface coverage and of the hybridization efficiency; parallel imaging of the process by Atomic Force Microscopy
Nucl. Acids Res. 2006 34: e32; doi:10.1093/nar/gnj034 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Folkert J. van Werven and H. Th. Marc Timmers

The use of biotin tagging in Saccharomyces cerevisiae improves the sensitivity of chromatin immunoprecipitation
Nucl. Acids Res. 2006 34: e33; doi:10.1093/nar/gkl003 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Matthew E. Pipkin and Mathias G. Lichtenheld

A reliable method to display authentic DNase I hypersensitive sites at long-ranges in single-copy genes from large genomes
Nucl. Acids Res. 2006 34: e34; doi:10.1093/nar/gkl006 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

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