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Previous Next 		Contents: Volume 34, Number 5, 2006    [Index by Author] 
      Down Survey and Summary
      Down Articles
      Down Corrigendum
      Down Methods Online
 

To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

Survey and Summary:Back

Chu-Xia Deng
BRCA1: cell cycle checkpoint, genetic instability, DNA damage response and cancer evolution
Nucl. Acids Res. 2006 34: 1416-1426; doi:10.1093/nar/gkl010 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Articles:Back

Kevin B. Turner, Nathan A. Hagan, and Daniele Fabris
Inhibitory effects of archetypical nucleic acid ligands on the interactions of HIV-1 nucleocapsid protein with elements of {Psi}-RNA
Nucl. Acids Res. 2006 34: 1305-1316; doi:10.1093/nar/gkl004 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Ewy Mathe, Magali Olivier, Shunsuke Kato, Chikashi Ishioka, Pierre Hainaut, and Sean V. Tavtigian
Computational approaches for predicting the biological effect of p53 missense mutations: a comparison of three sequence analysis based methods
Nucl. Acids Res. 2006 34: 1317-1325; doi:10.1093/nar/gkj518 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Ali Mokdad, Maryna V. Krasovska, Jiri Sponer, and Neocles B. Leontis
Structural and evolutionary classification of G/U wobble basepairs in the ribosome
Nucl. Acids Res. 2006 34: 1326-1341; doi:10.1093/nar/gkl025 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

David J. Law, Edwin M. Labut, Rachael D. Adams, and Juanita L. Merchant
An isoform of ZBP-89 predisposes the colon to colitis
Nucl. Acids Res. 2006 34: 1342-1350; doi:10.1093/nar/gkl022 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Rita Sulahian, Stephen Albert Johnston, and Thomas Kodadek
The proteasomal ATPase complex is required for stress-induced transcription in yeast
Nucl. Acids Res. 2006 34: 1351-1357; doi:10.1093/nar/gkl012 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

John M. Hinz, Robert S. Tebbs, Paul F. Wilson, Peter B. Nham, Edmund P. Salazar, Hatsumi Nagasawa, Salustra S. Urbin, Joel S. Bedford, and Larry H. Thompson
Repression of mutagenesis by Rad51D-mediated homologous recombination
Nucl. Acids Res. 2006 34: 1358-1368; doi:10.1093/nar/gkl020 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Thomas Ohrt, Dennis Merkle, Karin Birkenfeld, Christophe J. Echeverri, and Petra Schwille
In situ fluorescence analysis demonstrates active siRNA exclusion from the nucleus by Exportin 5
Nucl. Acids Res. 2006 34: 1369-1380; doi:10.1093/nar/gkl001 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Lorena Nasalean, Stéphanie Baudrey, Neocles B. Leontis, and Luc Jaeger
Controlling RNA self-assembly to form filaments
Nucl. Acids Res. 2006 34: 1381-1392; doi:10.1093/nar/gkl008 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Deng-Hong Zhang, Bo Zhou, Yu Huang, Lu-Xia Xu, and Jin-Qiu Zhou
The human Pif1 helicase, a potential Escherichia coli RecD homologue, inhibits telomerase activity
Nucl. Acids Res. 2006 34: 1393-1404; doi:10.1093/nar/gkl029 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Giovanni Maga, Igor Shevelev, Giuseppe Villani, Silvio Spadari, and Ulrich Hübscher
Human replication protein A can suppress the intrinsic in vitro mutator phenotype of human DNA polymerase {lambda}
Nucl. Acids Res. 2006 34: 1405-1415; doi:10.1093/nar/gkl032 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

A. Palomino, P. Herrero, and F. Moreno
Tpk3 and Snf1 protein kinases regulate Rgt1 association with Saccharomyces cerevisiae HXK2 promoter
Nucl. Acids Res. 2006 34: 1427-1438; doi:10.1093/nar/gkl028 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Paul Thaw, Svetlana E. Sedelnikova, Tatyana Muranova, Sebastian Wiese, Sylvia Ayora, Juan C. Alonso, Arie B. Brinkman, Jasper Akerboom, John van der Oost, and John B. Rafferty
Structural insight into gene transcriptional regulation and effector binding by the Lrp/AsnC family
Nucl. Acids Res. 2006 34: 1439-1449; doi:10.1093/nar/gkl009 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Wilhelm Andreas Weihofen, Aslan Cicek, Florencia Pratto, Juan Carlos Alonso, and Wolfram Saenger
Structures of {omega} repressors bound to direct and inverted DNA repeats explain modulation of transcription
Nucl. Acids Res. 2006 34: 1450-1458; doi:10.1093/nar/gkl015 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Hsiao-Ching Chuang, Ching-Wen Chang, Geen-Dong Chang, Tso-Pang Yao, and Hungwen Chen
Histone deacetylase 3 binds to and regulates the GCMa transcription factor
Nucl. Acids Res. 2006 34: 1459-1469; doi:10.1093/nar/gkl048 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Miguel A. Ramírez-Romero, Irina Masulis, Miguel A. Cevallos, Víctor González, and Guillermo Dávila
The Rhizobium etli {sigma}70 (SigA) factor recognizes a lax consensus promoter
Nucl. Acids Res. 2006 34: 1470-1480; doi:10.1093/nar/gkl023 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Chiaolong Hsiao, Srividya Mohan, Eli Hershkovitz, Allen Tannenbaum, and Loren Dean Williams
Single nucleotide RNA choreography
Nucl. Acids Res. 2006 34: 1481-1491; doi:10.1093/nar/gkj500 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Jinshui Fan, Ming Zhan, Jikui Shen, Jennifer L. Martindale, Xiaoling Yang, Tomoko Kawai, and Myriam Gorospe
En masse nascent transcription analysis to elucidate regulatory transcription factors
Nucl. Acids Res. 2006 34: 1492-1500; doi:10.1093/nar/gkj510 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Amitava Adhikary, David Becker, Sean Collins, Jessica Koppen, and Michael D. Sevilla
C5'- and C3'-sugar radicals produced via photo-excitation of one-electron oxidized adenine in 2'-deoxyadenosine and its derivatives
Nucl. Acids Res. 2006 34: 1501-1511; doi:10.1093/nar/gkl026 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Victoria P. Belancio, Dale J. Hedges, and Prescott Deininger
LINE-1 RNA splicing and influences on mammalian gene expression
Nucl. Acids Res. 2006 34: 1512-1521; doi:10.1093/nar/gkl027 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Cécile Esnault, Jean Millet, Olivier Schwartz, and Thierry Heidmann
Dual inhibitory effects of APOBEC family proteins on retrotransposition of mammalian endogenous retroviruses
Nucl. Acids Res. 2006 34: 1522-1531; doi:10.1093/nar/gkl054 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Kentaro Yano, Kazuhide Imai, Akifumi Shimizu, and Takao Hanashita
A new method for gene discovery in large-scale microarray data
Nucl. Acids Res. 2006 34: 1532-1539; doi:10.1093/nar/gkl058 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Yusuke Doi, Atsushi Katafuchi, Yoshie Fujiwara, Kenichi Hitomi, John A. Tainer, Hiroshi Ide, and Shigenori Iwai
Synthesis and characterization of oligonucleotides containing 2'-fluorinated thymidine glycol as inhibitors of the endonuclease III reaction
Nucl. Acids Res. 2006 34: 1540-1551; doi:10.1093/nar/gkl061 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Kohichi Kaneda, Junichi Sekiguchi, and Toshio Shida
Role of the tryptophan residue in the vicinity of the catalytic center of exonuclease III family AP endonucleases: AP site recognition mechanism
Nucl. Acids Res. 2006 34: 1552-1563; doi:10.1093/nar/gkl059 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Serafin Vivanco-Domínguez, Luis Rogelio Cruz-Vera, and Gabriel Guarneros
Excess of charged tRNALys maintains low levels of peptidyl-tRNA hydrolase in pth(Ts) mutants at a non-permissive temperature
Nucl. Acids Res. 2006 34: 1564-1570; doi:10.1093/nar/gkl046 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Alberto Paccanaro, James A. Casbon, and Mansoor A. S. Saqi
Spectral clustering of protein sequences
Nucl. Acids Res. 2006 34: 1571-1580; doi:10.1093/nar/gkj515 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Stefan Beyer and Friedrich C. Simmel
A modular DNA signal translator for the controlled release of a protein by an aptamer
Nucl. Acids Res. 2006 34: 1581-1587; doi:10.1093/nar/gkl075 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Ivan Mijakovic, Dina Petranovic, Boris Macek, Tina Cepo, Matthias Mann, Julian Davies, Peter R. Jensen, and Dusica Vujaklija
Bacterial single-stranded DNA-binding proteins are phosphorylated on tyrosine
Nucl. Acids Res. 2006 34: 1588-1596; doi:10.1093/nar/gkj514 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Kathryn L. Gilroy, Chrysoula Leontiou, Kay Padget, Jeremy H. Lakey, and Caroline A. Austin
mAMSA resistant human topoisomerase IIß mutation G465D has reduced ATP hydrolysis activity
Nucl. Acids Res. 2006 34: 1597-1607; doi:10.1093/nar/gkl057 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Xiangchao Gan, Alan Wee-Chung Liew, and Hong Yan
Microarray missing data imputation based on a set theoretic framework and biological knowledge
Nucl. Acids Res. 2006 34: 1608-1619; doi:10.1093/nar/gkl047 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Jeff W. Hill and Michele K. Evans
Dimerization and opposite base-dependent catalytic impairment of polymorphic S326C OGG1 glycosylase
Nucl. Acids Res. 2006 34: 1620-1632; doi:10.1093/nar/gkl060 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Andreas Kegel, Paula Martinez, Sidney D. Carter, and Stefan U. Åström
Genome wide distribution of illegitimate recombination events in Kluyveromyces lactis
Nucl. Acids Res. 2006 34: 1633-1645; doi:10.1093/nar/gkl064 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Xiaowei Wang and Xiaohui Wang
Systematic identification of microRNA functions by combining target prediction and expression profiling
Nucl. Acids Res. 2006 34: 1646-1652; doi:10.1093/nar/gkl068 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Fanny Turlure, Goedele Maertens, Shaila Rahman, Peter Cherepanov, and Alan Engelman
A tripartite DNA-binding element, comprised of the nuclear localization signal and two AT-hook motifs, mediates the association of LEDGF/p75 with chromatin in vivo
Nucl. Acids Res. 2006 34: 1653-1665; doi:10.1093/nar/gkl052 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Corrigendum:Back

Bo Zhao, Jillian Wang, Nicholas E. Geacintov, and Zhigang Wang
Pol{eta}, Pol{zeta} and Rev1 together are required for G to T transversion mutations induced by the (+)- and (–)-trans-anti-BPDE-N2-dG DNA adducts in yeast cells
Nucl. Acids Res. 2006 34: 1666; doi:10.1093/nar/gkl056 [Extract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Marc Spingola, Javier Armisen, and Manuel Ares, Jr
Mer1p is a modular splicing factor whose function depends on the conserved U2 snRNP protein Snu17p
Nucl. Acids Res. 2006 34: 1667; doi:10.1093/nar/gkl089 [Extract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Vicente Marchan, Samuel Ortega, Daniel Pulido, Enrique Pedroso, and Anna Grandas
Diels-Alder cycloadditions in water for the straightforward preparation of peptide–oligonucleotide conjugates
Nucl. Acids Res. 2006 34: 1668; doi:10.1093/nar/gkl110 [Extract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Methods Online:Back

Hsin-Chih Yeh, Yi-Ping Ho, Ie-Ming Shih, and Tza-Huei Wang
Homogeneous point mutation detection by quantum dot-mediated two-color fluorescence coincidence analysis
Nucl. Acids Res. 2006 34: e35; doi:10.1093/nar/gkl021 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Robert Chan, Madaline Gilbert, Kristin M. Thompson, H. Nicholas Marsh, David M. Epstein, and P. Shannon Pendergrast
Co-expression of anti-NF{kappa}B RNA aptamers and siRNAs leads to maximal suppression of NF{kappa}B activity in mammalian cells
Nucl. Acids Res. 2006 34: e36; doi:10.1093/nar/gnj028 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Lahouari Amar, Mathieu Desclaux, Nicole Faucon-Biguet, Jacques Mallet, and Roland Vogel
Control of small inhibitory RNA levels and RNA interference by doxycycline induced activation of a minimal RNA polymerase III promoter
Nucl. Acids Res. 2006 34: e37; doi:10.1093/nar/gkl034 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Su-Wen Chua, Praveen Vijayakumar, Peter M. Nissom, Chew-Yeam Yam, Victor V.T. Wong, and He Yang
A novel normalization method for effective removal of systematic variation in microarray data
Nucl. Acids Res. 2006 34: e38; doi:10.1093/nar/gkl024 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Joanna A. M. Braks, Blandine Franke-Fayard, Hans Kroeze, Chris J. Janse, and Andrew P. Waters
Development and application of a positive–negative selectable marker system for use in reverse genetics in Plasmodium
Nucl. Acids Res. 2006 34: e39; doi:10.1093/nar/gnj033 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Sarah W. Kamau, Paul O. Hassa, Benedikt Steitz, Alke Petri-Fink, Heinrich Hofmann, Margarethe Hofmann-Amtenbrink, Brigitte von Rechenberg, and Michael O. Hottiger
Enhancement of the efficiency of non-viral gene delivery by application of pulsed magnetic field
Nucl. Acids Res. 2006 34: e40; doi:10.1093/nar/gkl035 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Christoph A. Merten, Jörn Stitz, Gundula Braun, Julia Medvedovska, Klaus Cichutek, and Christian J. Buchholz
Fusoselect: cell–cell fusion activity engineered by directed evolution of a retroviral glycoprotein
Nucl. Acids Res. 2006 34: e41; doi:10.1093/nar/gkl053 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Kazuki Kurimoto, Yukihiro Yabuta, Yasuhide Ohinata, Yukiko Ono, Kenichiro D. Uno, Rikuhiro G. Yamada, Hiroki R. Ueda, and Mitinori Saitou
An improved single-cell cDNA amplification method for efficient high-density oligonucleotide microarray analysis
Nucl. Acids Res. 2006 34: e42; doi:10.1093/nar/gkl050 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Alexandra Erve, Yasmina Saoudi, Sylvie Thirot, Corinne Guetta-Landras, Jean-Claude Florent, Chi-Hung Nguyen, David S. Grierson, and Andrei V. Popov
BENA435, a new cell-permeant photoactivated green fluorescent DNA probe
Nucl. Acids Res. 2006 34: e43; doi:10.1093/nar/gkl011 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Hikaru Taira, Takahiro Hohsaka, and Masahiko Sisido
In vitro selection of tRNAs for efficient four-base decoding to incorporate non-natural amino acids into proteins in an Escherichia coli cell-free translation system
Nucl. Acids Res. 2006 34: e44; doi:10.1093/nar/gkl087 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.