Nucleic Acids Research

Editorial

Johannes Grillari and William Dynan

Editorial
Nucl. Acids Res. 2007 35: 7397-7398; doi:10.1093/nar/gkm1164 [Extract] [FREE Full Text] [Print PDF][Screen PDF]  

Survey and Summary

Get checked abstract Kim J. Krishnan, Laura C. Greaves, Amy K. Reeve, and Doug Turnbull

The ageing mitochondrial genome
Nucleic Acids Research Advance Access published on October 2, 2007
Nucl. Acids Res. 2007 35: 7399-7405; doi:10.1093/nar/gkm635 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Christine Kim Garcia, Woodring E. Wright, and Jerry W. Shay

Human diseases of telomerase dysfunction: insights into tissue aging
Nucleic Acids Research Advance Access published on October 2, 2007
Nucl. Acids Res. 2007 35: 7406-7416; doi:10.1093/nar/gkm644 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Jian-Hua Chen, C. Nicholes Hales, and Susan E. Ozanne

DNA damage, cellular senescence and organismal ageing: causal or correlative?
Nucleic Acids Research Advance Access published on October 2, 2007
Nucl. Acids Res. 2007 35: 7417-7428; doi:10.1093/nar/gkm681 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Dinshaw J. Patel, Anh Tuân Phan, and Vitaly Kuryavyi

Human telomere, oncogenic promoter and 5'-UTR G-quadruplexes: diverse higher order DNA and RNA targets for cancer therapeutics
Nucleic Acids Research Advance Access published on October 2, 2007
Nucl. Acids Res. 2007 35: 7429-7455; doi:10.1093/nar/gkm711 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Sascha Beneke and Alexander Bürkle

Poly(ADP-ribosyl)ation in mammalian ageing
Nucleic Acids Research Advance Access published on October 2, 2007
Nucl. Acids Res. 2007 35: 7456-7465; doi:10.1093/nar/gkm735 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Vera Gorbunova, Andrei Seluanov, Zhiyong Mao, and Christpher Hine

Changes in DNA repair during aging
Nucleic Acids Research Advance Access published on October 2, 2007
Nucl. Acids Res. 2007 35: 7466-7474; doi:10.1093/nar/gkm756 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Francis Rodier, Judith Campisi, and Dipa Bhaumik

Two faces of p53: aging and tumor suppression
Nucleic Acids Research Advance Access published on October 16, 2007
Nucl. Acids Res. 2007 35: 7475-7484; doi:10.1093/nar/gkm744 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Ahmad R. Heydari, Archana Unnikrishnan, Lisa Ventrella Lucente, and Arlan Richardson

Caloric restriction and genomic stability
Nucleic Acids Research Advance Access published on October 16, 2007
Nucl. Acids Res. 2007 35: 7485-7496; doi:10.1093/nar/gkm860 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Mark A. Lovell and William R. Markesbery

Oxidative DNA damage in mild cognitive impairment and late-stage Alzheimer's disease
Nucleic Acids Research Advance Access published on October 18, 2007
Nucl. Acids Res. 2007 35: 7497-7504; doi:10.1093/nar/gkm821 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract João F. Passos, Gabriele Saretzki, and Thomas von Zglinicki

DNA damage in telomeres and mitochondria during cellular senescence: is there a connection?
Nucleic Acids Research Advance Access published on November 5, 2007
Nucl. Acids Res. 2007 35: 7505-7513; doi:10.1093/nar/gkm893 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Peter Laun, Carlo V. Bruschi, J. Richard Dickinson, Mark Rinnerthaler, Gino Heeren, Richard Schwimbersky, Raphaela Rid, and Michael Breitenbach

Yeast mother cell-specific ageing, genetic (in)stability, and the somatic mutation theory of ageing
Nucleic Acids Research Advance Access published on November 6, 2007
Nucl. Acids Res. 2007 35: 7514-7526; doi:10.1093/nar/gkm919 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Robert M. Brosh, Jr and Vilhelm A. Bohr

Human premature aging, DNA repair and RecQ helicases
Nucleic Acids Research Advance Access published on November 15, 2007
Nucl. Acids Res. 2007 35: 7527-7544; doi:10.1093/nar/gkm1008 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract William C. Burhans and Martin Weinberger

DNA replication stress, genome instability and aging
Nucleic Acids Research Advance Access published on November 30, 2007
Nucl. Acids Res. 2007 35: 7545-7556; doi:10.1093/nar/gkm1059 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Jonathan Kenyon and Stanton L. Gerson

The role of DNA damage repair in aging of adult stem cells
Nucleic Acids Research Advance Access published on December 26, 2007
Nucl. Acids Res. 2007 35: 7557-7565; doi:10.1093/nar/gkm1064 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Johannes Grillari, Hermann Katinger, and Regina Voglauer

Contributions of DNA interstrand cross-links to aging of cells and organisms
Nucleic Acids Research Advance Access published on December 14, 2007
Nucl. Acids Res. 2007 35: 7566-7576; doi:10.1093/nar/gkm1065 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Peter D. Karp, Ingrid M. Keseler, Alexander Shearer, Mario Latendresse, Markus Krummenacker, Suzanne M. Paley, Ian Paulsen, Julio Collado-Vides, Socorro Gama-Castro, Martin Peralta-Gil, Alberto Santos-Zavaleta, Mónica I. Peñaloza-Spínola, César Bonavides-Martinez, and John Ingraham

Multidimensional annotation of the Escherichia coli K-12 genome
Nucleic Acids Research Advance Access published on October 16, 2007
Nucl. Acids Res. 2007 35: 7577-7590; doi:10.1093/nar/gkm740 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Computational Biology

Get checked abstract Buyong Ma and Arnold J. Levine

Probing potential binding modes of the p53 tetramer to DNA based on the symmetries encoded in p53 response elements
Nucleic Acids Research Advance Access published on November 5, 2007
Nucl. Acids Res. 2007 35: 7733-7747; doi:10.1093/nar/gkm890 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Genomics

Get checked abstract Zhenguo Lin, Masatoshi Nei, and Hong Ma

The origins and early evolution of DNA mismatch repair genes—multiple horizontal gene transfers and co-evolution
Nucleic Acids Research Advance Access published on October 26, 2007
Nucl. Acids Res. 2007 35: 7591-7603; doi:10.1093/nar/gkm921 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Molecular Biology

Get checked abstract Ki-Hyun Kim, Peter E. Nielsen, and Peter M. Glazer

Site-directed gene mutation at mixed sequence targets by psoralen-conjugated pseudo-complementary peptide nucleic acids
Nucleic Acids Research Advance Access published on October 30, 2007
Nucl. Acids Res. 2007 35: 7604-7613; doi:10.1093/nar/gkm666 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Evaldas Katilius, Carole Flores, and Neal W. Woodbury

Exploring the sequence space of a DNA aptamer using microarrays
Nucleic Acids Research Advance Access published on November 2, 2007
Nucl. Acids Res. 2007 35: 7626-7635; doi:10.1093/nar/gkm922 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Oliver Mortusewicz, Jean-Christophe Amé, Valérie Schreiber, and Heinrich Leonhardt

Feedback-regulated poly(ADP-ribosyl)ation by PARP-1 is required for rapid response to DNA damage in living cells
Nucleic Acids Research Advance Access published on November 3, 2007
Nucl. Acids Res. 2007 35: 7665-7675; doi:10.1093/nar/gkm933 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Sophie Mourgues, Martine E. Lomax, and Peter O’Neill

Base excision repair processing of abasic site/single-strand break lesions within clustered damage sites associated with XRCC1 deficiency
Nucleic Acids Research Advance Access published on November 3, 2007
Nucl. Acids Res. 2007 35: 7676-7687; doi:10.1093/nar/gkm947 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Yong Qin, Evonne M. Rezler, Vijay Gokhale, Daekyu Sun, and Laurence H. Hurley

Characterization of the G-quadruplexes in the duplex nuclease hypersensitive element of the PDGF-A promoter and modulation of PDGF-A promoter activity by TMPyP4
Nucleic Acids Research Advance Access published on November 5, 2007
Nucl. Acids Res. 2007 35: 7698-7713; doi:10.1093/nar/gkm538 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Dong Van Quyen, Sung Chul Ha, Ky Lowenhaupt, Alexander Rich, Kyeong Kyu Kim, and Yang-Gyun Kim

Characterization of DNA-binding activity of Z domains from poxviruses and the importance of the β-wing regions in converting B-DNA to Z-DNA
Nucleic Acids Research Advance Access published on November 5, 2007
Nucl. Acids Res. 2007 35: 7714-7720; doi:10.1093/nar/gkm748 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Nucleic Acid Enzymes

Get checked abstract Bijoy K. Mohanty and Sidney R. Kushner

Ribonuclease P processes polycistronic tRNA transcripts in Escherichia coli independent of ribonuclease E
Nucleic Acids Research Advance Access published on November 2, 2007
Nucl. Acids Res. 2007 35: 7614-7625; doi:10.1093/nar/gkm917 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Niroshika Keppetipola and Stewart Shuman

Characterization of the 2',3' cyclic phosphodiesterase activities of Clostridium thermocellum polynucleotide kinase-phosphatase and bacteriophage phosphatase
Nucleic Acids Research Advance Access published on November 5, 2007
Nucl. Acids Res. 2007 35: 7721-7732; doi:10.1093/nar/gkm868 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

RNA

Get checked abstract Jenny Blechingberg, Søren Lykke-Andersen, Torben Heick Jensen, Arne Lund Jørgensen, and Anders Lade Nielsen

Regulatory mechanisms for 3'-end alternative splicing and polyadenylation of the Glial Fibrillary Acidic Protein, GFAP, transcript
Nucleic Acids Research Advance Access published on November 2, 2007
Nucl. Acids Res. 2007 35: 7636-7650; doi:10.1093/nar/gkm931 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Sandra C. Viegas, Verena Pfeiffer, Alexandra Sittka, Inês J. Silva, Jörg Vogel, and Cecília M. Arraiano

Characterization of the role of ribonucleases in Salmonella small RNA decay
Nucleic Acids Research Advance Access published on November 3, 2007
Nucl. Acids Res. 2007 35: 7651-7664; doi:10.1093/nar/gkm916 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Brian Luke, Claus M. Azzalin, Nele Hug, Anna Deplazes, Matthias Peter, and Joachim Lingner

Saccharomyces cerevisiae Ebs1p is a putative ortholog of human Smg7 and promotes nonsense-mediated mRNA decay
Nucleic Acids Research Advance Access published on November 4, 2007
Nucl. Acids Res. 2007 35: 7688-7697; doi:10.1093/nar/gkm912 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Methods Online

Get checked abstract Michaela Scherr, Letizia Venturini, Karin Battmer, Michael Schaller-Schoenitz, Daniel Schaefer, Iris Dallmann, Arnold Ganser, and Matthias Eder

Lentivirus-mediated antagomir expression for specific inhibition of miRNA function
Nucleic Acids Research Advance Access published on November 19, 2007
Nucl. Acids Res. 2007 35: e149; doi:10.1093/nar/gkm971 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Adam Zemla, Brian Geisbrecht, Jason Smith, Marisa Lam, Bonnie Kirkpatrick, Mark Wagner, Tom Slezak, and Carol Ecale Zhou

STRALCP—structure alignment-based clustering of proteins
Nucleic Acids Research Advance Access published on November 26, 2007
Nucl. Acids Res. 2007 35: e150; doi:10.1093/nar/gkm1049 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract C. Rieger, R. Poppino, R. Sheridan, K. Moley, R. Mitra, and D. Gottlieb

Polony analysis of gene expression in ES cells and blastocysts
Nucleic Acids Research Advance Access published on December 10, 2007
Nucl. Acids Res. 2007 35: e151; doi:10.1093/nar/gkm1076 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Michael B. Smeaton, Paul S. Miller, Gary Ketner, and Les A. Hanakahi

Small-scale extracts for the study of nucleotide excision repair and non-homologous end joining
Nucleic Acids Research Advance Access published on December 10, 2007
Nucl. Acids Res. 2007 35: e152; doi:10.1093/nar/gkm974 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

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