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Previous Next 		Contents: Volume 35, Number 3, February 2007    [Index by Author] 
      Down Computational Biology
      Down Molecular Biology
      Down Nucleic Acid Enzymes
      Down RNA
      Down Structural Biology
      Down Methods Online
      Down Corrigendum
 

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To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

Computational Biology:Back

Ryan K. Shultzaberger, Zehua Chen, Karen A. Lewis, and Thomas D. Schneider
Anatomy of Escherichia coli {sigma}70 promoters
Nucleic Acids Research Advance Access published on December 22, 2006
Nucl. Acids Res. 2007 35: 771-788; doi:10.1093/nar/gkl956 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

Molecular Biology:Back

Kohsuke Kato, Mary Miyaji-Yamaguchi, Mitsuru Okuwaki, and Kyosuke Nagata
Histone acetylation-independent transcription stimulation by a histone chaperone
Nucleic Acids Research Advance Access published on December 19, 2006
Nucl. Acids Res. 2007 35: 705-715; doi:10.1093/nar/gkl1077 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

Mahajoub Bello-Roufaï, Olivier Lambert, and Bruno Pitard
Relationships between the physicochemical properties of an amphiphilic triblock copolymers/DNA complexes and their intramuscular transfection efficiency
Nucleic Acids Research Advance Access published on December 20, 2006
Nucl. Acids Res. 2007 35: 728-739; doi:10.1093/nar/gkl860 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Arie B. Brinkman, Sebastiaan W. C. Pennings, Georgia G. Braliou, Luc E. G. Rietveld, and Hendrik G. Stunnenberg
DNA methylation immediately adjacent to active histone marking does not silence transcription
Nucleic Acids Research Advance Access published on January 3, 2007
Nucl. Acids Res. 2007 35: 801-811; doi:10.1093/nar/gkl1014 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Geetu Mendiratta, Peter R. Eriksson, and David J. Clark
Cooperative binding of the yeast Spt10p activator to the histone upstream activating sequences is mediated through an N-terminal dimerization domain
Nucleic Acids Research Advance Access published on January 3, 2007
Nucl. Acids Res. 2007 35: 812-821; doi:10.1093/nar/gkl1079 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Nathalie Grandin and Michel Charbonneau
Control of the yeast telomeric senescence survival pathways of recombination by the Mec1 and Mec3 DNA damage sensors and RPA
Nucleic Acids Research Advance Access published on January 3, 2007
Nucl. Acids Res. 2007 35: 822-838; doi:10.1093/nar/gkl1081 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Kenji Fukui, Hiromichi Kosaka, Seiki Kuramitsu, and Ryoji Masui
Nuclease activity of the MutS homologue MutS2 from Thermus thermophilus is confined to the Smr domain
Nucleic Acids Research Advance Access published on January 10, 2007
Nucl. Acids Res. 2007 35: 850-860; doi:10.1093/nar/gkl735 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Ying Zhou, Haiping Kou, and Zhigang Wang
Tfb5 interacts with Tfb2 and facilitates nucleotide excision repair in yeast
Nucleic Acids Research Advance Access published on January 10, 2007
Nucl. Acids Res. 2007 35: 861-871; doi:10.1093/nar/gkl1085 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Lucy Glover, Sam Alsford, Caroline Beattie, and David Horn
Deletion of a trypanosome telomere leads to loss of silencing and progressive loss of terminal DNA in the absence of cell cycle arrest
Nucleic Acids Research Advance Access published on January 23, 2007
Nucl. Acids Res. 2007 35: 872-880; doi:10.1093/nar/gkl1100 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Timothy Grocott, Victoria Frost, Marjorie Maillard, Terje Johansen, Grant N. Wheeler, Lucy J. Dawes, I. Michael Wormstone, and Andrew Chantry
The MH1 domain of Smad3 interacts with Pax6 and represses autoregulation of the Pax6 P1 promoter
Nucleic Acids Research Advance Access published on January 23, 2007
Nucl. Acids Res. 2007 35: 890-901; doi:10.1093/nar/gkl1105 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Masahiro Hiratochi, Hisashi Nagase, Yu Kuramochi, Chang-Sung Koh, Takeshi Ohkawara, and Kohzo Nakayama
The Delta intracellular domain mediates TGF-ß/Activin signaling through binding to Smads and has an important bi-directional function in the Notch–Delta signaling pathway
Nucleic Acids Research Advance Access published on January 23, 2007
Nucl. Acids Res. 2007 35: 912-922; doi:10.1093/nar/gkl1128 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

J. Armando Casas-Mollano, Karin van Dijk, John Eisenhart, and Heriberto Cerutti
SET3p monomethylates histone H3 on lysine 9 and is required for the silencing of tandemly repeated transgenes in Chlamydomonas
Nucleic Acids Research Advance Access published on January 23, 2007
Nucl. Acids Res. 2007 35: 939-950; doi:10.1093/nar/gkl1149 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Tumpa Sarkar, Iulia Vitoc, Ishita Mukerji, and Nicholas V. Hud
Bacterial protein HU dictates the morphology of DNA condensates produced by crowding agents and polyamines
Nucleic Acids Research Advance Access published on January 26, 2007
Nucl. Acids Res. 2007 35: 951-961; doi:10.1093/nar/gkl1093 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Toshitsugu Fujita, Stephan Ryser, Silvia Tortola, Isabelle Piuz, and Werner Schlegel
Gene-specific recruitment of positive and negative elongation factors during stimulated transcription of the MKP-1 gene in neuroendocrine cells
Nucleic Acids Research Advance Access published on January 26, 2007
Nucl. Acids Res. 2007 35: 1007-1017; doi:10.1093/nar/gkl1138 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

Nucleic Acid Enzymes:Back

Jeffrey L. Boldt, Kevin V. Kepple, Geoffrey D. Cassell, and Anca M. Segall
Spermidine biases the resolution of Holliday junctions by phage {lambda} integrase
Nucleic Acids Research Advance Access published on December 19, 2006
Nucl. Acids Res. 2007 35: 716-727; doi:10.1093/nar/gkl1078 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Alexander E. Smith and Kevin G. Ford
Specific targeting of cytosine methylation to DNA sequences in vivo
Nucleic Acids Research Advance Access published on December 20, 2006
Nucl. Acids Res. 2007 35: 740-754; doi:10.1093/nar/gkl1053 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Dharmendra Kumar Singh, Mohammad Nurul Islam, Nirupam Roy Choudhury, Sumona Karjee, and Sunil Kumar Mukherjee
The 32 kDa subunit of replication protein A (RPA) participates in the DNA replication of Mung bean yellow mosaic India virus (MYMIV) by interacting with the viral Rep protein
Nucleic Acids Research Advance Access published on December 20, 2006
Nucl. Acids Res. 2007 35: 755-770; doi:10.1093/nar/gkl1088 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Amy Raymond and Stewart Shuman
Deinococcus radiodurans RNA ligase exemplifies a novel ligase clade with a distinctive N-terminal module that is important for 5'-PO4 nick sealing and ligase adenylylation but dispensable for phosphodiester formation at an adenylylated nick
Nucleic Acids Research Advance Access published on January 4, 2007
Nucl. Acids Res. 2007 35: 839-849; doi:10.1093/nar/gkl1090 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Joanne L. Parker, Aleksandra B. Bielen, Ivan Dikic, and Helle D. Ulrich
Contributions of ubiquitin- and PCNA-binding domains to the activity of Polymerase {eta} in Saccharomyces cerevisiae
Nucleic Acids Research Advance Access published on January 23, 2007
Nucl. Acids Res. 2007 35: 881-889; doi:10.1093/nar/gkl1102 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Géraldine Farge, Xuan Hoi Pham, Teresa Holmlund, Ivan Khorostov, and Maria Falkenberg
The accessory subunit B of DNA polymerase {gamma} is required for mitochondrial replisome function
Nucleic Acids Research Advance Access published on January 23, 2007
Nucl. Acids Res. 2007 35: 902-911; doi:10.1093/nar/gkl1116 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Sandra Wydau, Maria-Laura Ferri-Fioni, Sylvain Blanquet, and Pierre Plateau
GEK1, a gene product of Arabidopsis thaliana involved in ethanol tolerance, is a D-aminoacyl-tRNA deacylase
Nucleic Acids Research Advance Access published on January 23, 2007
Nucl. Acids Res. 2007 35: 930-938; doi:10.1093/nar/gkl1145 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Elizabeth R. Barry, Adam T. McGeoch, Zvi Kelman, and Stephen D. Bell
Archaeal MCM has separable processivity, substrate choice and helicase domains
Nucleic Acids Research Advance Access published on January 26, 2007
Nucl. Acids Res. 2007 35: 988-998; doi:10.1093/nar/gkl1117 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

RNA:Back

Michael Hölzel, Thomas Grimm, Michaela Rohrmoser, Anastassia Malamoussi, Thomas Harasim, Anita Gruber-Eber, Elisabeth Kremmer, and Dirk Eick
The BRCT domain of mammalian Pes1 is crucial for nucleolar localization and rRNA processing
Nucleic Acids Research Advance Access published on December 22, 2006
Nucl. Acids Res. 2007 35: 789-800; doi:10.1093/nar/gkl1058 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Michael P. Spiller, Kum-Loong Boon, Martin A. M. Reijns, and Jean D. Beggs
The Lsm2-8 complex determines nuclear localization of the spliceosomal U6 snRNA
Nucleic Acids Research Advance Access published on January 23, 2007
Nucl. Acids Res. 2007 35: 923-929; doi:10.1093/nar/gkl1130 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

Pierre Mandin, Francis Repoila, Massimo Vergassola, Thomas Geissmann, and Pascale Cossart
Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets
Nucleic Acids Research Advance Access published on January 26, 2007
Nucl. Acids Res. 2007 35: 962-974; doi:10.1093/nar/gkl1096 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

Véronique Arluison, Sungchul Hohng, Rahul Roy, Olivier Pellegrini, Philippe Régnier, and Taekjip Ha
Spectroscopic observation of RNA chaperone activities of Hfq in post-transcriptional regulation by a small non-coding RNA
Nucleic Acids Research Advance Access published on January 26, 2007
Nucl. Acids Res. 2007 35: 999-1006; doi:10.1093/nar/gkl1124 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Johannes H. Urban and Jörg Vogel
Translational control and target recognition by Escherichia coli small RNAs in vivo
Nucleic Acids Research Advance Access published on January 30, 2007
Nucl. Acids Res. 2007 35: 1018-1037; doi:10.1093/nar/gkl1040 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Structural Biology:Back

Svetlana Baranova, Fedor V. Tuzikov, Olga D. Zakharova, Natalia A. Tuzikova, Christina Calmels, Simon Litvak, Laura Tarrago-Litvak, Vincent Parissi, and Georgy A. Nevinsky
Small-angle X-ray characterization of the nucleoprotein complexes resulting from DNA-induced oligomerization of HIV-1 integrase
Nucleic Acids Research Advance Access published on January 26, 2007
Nucl. Acids Res. 2007 35: 975-987; doi:10.1093/nar/gkl1111 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Methods Online:Back

Pierre Taberlet, Eric Coissac, François Pompanon, Ludovic Gielly, Christian Miquel, Alice Valentini, Thierry Vermat, Gérard Corthier, Christian Brochmann, and Eske Willerslev
Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding
Nucleic Acids Research Advance Access published on December 14, 2006
Nucl. Acids Res. 2007 35: e14; doi:10.1093/nar/gkl938 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Heike Fiegler, Jochen B. Geigl, Sabine Langer, Diane Rigler, Keith Porter, Kristian Unger, Nigel P. Carter, and Michael R. Speicher
High resolution array-CGH analysis of single cells
Nucleic Acids Research Advance Access published on December 18, 2006
Nucl. Acids Res. 2007 35: e15; doi:10.1093/nar/gkl1030 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Ming Xiao, Angie Phong, Connie Ha, Ting-Fung Chan, Dongmei Cai, Lucinda Leung, Eunice Wan, Amy L. Kistler, Joseph L. DeRisi, Paul R. Selvin, and Pui-Yan Kwok
Rapid DNA mapping by fluorescent single molecule detection
Nucleic Acids Research Advance Access published on December 14, 2006
Nucl. Acids Res. 2007 35: e16; doi:10.1093/nar/gkl1044 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Michael Hölzel, Michaela Rohrmoser, Mathias Orban, Cornelia Hömig, Thomas Harasim, Anastassia Malamoussi, Anita Gruber-Eber, Vigo Heissmeyer, Georg Bornkamm, and Dirk Eick
Rapid conditional knock-down–knock-in system for mammalian cells
Nucleic Acids Research Advance Access published on December 14, 2006
Nucl. Acids Res. 2007 35: e17; doi:10.1093/nar/gkl1055 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Li Zhang, Chunlei Wu, Roberto Carta, and Haitao Zhao
Free energy of DNA duplex formation on short oligonucleotide microarrays
Nucleic Acids Research Advance Access published on December 14, 2006
Nucl. Acids Res. 2007 35: e18; doi:10.1093/nar/gkl1064 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

John A. L. Armour, Raquel Palla, Patrick L. J. M. Zeeuwen, Martin den Heijer, Joost Schalkwijk, and Edward J. Hollox
Accurate, high-throughput typing of copy number variation using paralogue ratios from dispersed repeats
Nucleic Acids Research Advance Access published on December 14, 2006
Nucl. Acids Res. 2007 35: e19; doi:10.1093/nar/gkl1089 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Timothy E. Reddy, Boris E. Shakhnovich, Daniel S. Roberts, Shelley J. Russek, and Charles DeLisi
Positional clustering improves computational binding site detection and identifies novel cis-regulatory sites in mammalian GABAA receptor subunit genes
Nucleic Acids Research Advance Access published on January 3, 2007
Nucl. Acids Res. 2007 35: e20; doi:10.1093/nar/gkl1062 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Request Permissions]  

Corrigendum:Back

Raphaël Kiekens, Annelies Vercauteren, Beatrijs Moerkerke, Els Goetghebeur, Hilde Van Den Daele, Roel Sterken, Martin Kuiper, Fred van Eeuwijk, and Marnik Vuylsteke
Genome-wide screening for cis-regulatory variation using a classical diallel crossing scheme
Nucleic Acids Research Advance Access published on January 23, 2007
Nucl. Acids Res. 2007 35: 1038; doi:10.1093/nar/gkm007 [Extract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.