Nucleic Acids Research

Chemistry:

Na Lin, Jun Yan, Zhen Huang, Craig Altier, Minyong Li, Nicolas Carrasco, Mitsu Suyemoto, Lynette Johnston, Siming Wang, Qian Wang, Hao Fang, Julianne Caton-Williams, and Binghe Wang

Design and synthesis of boronic-acid-labeled thymidine triphosphate for incorporation into DNA
Nucleic Acids Research Advance Access published on January 31, 2007
Nucl. Acids Res. 2007 35: 1222-1229; doi:10.1093/nar/gkl1091 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

Computational Biology:

Jason E. Donald, William W. Chen, and Eugene I. Shakhnovich

Energetics of protein–DNA interactions
Nucleic Acids Research Advance Access published on January 26, 2007
Nucl. Acids Res. 2007 35: 1039-1047; doi:10.1093/nar/gkl1103 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

Trevor W. Siggers and Barry Honig

Structure-based prediction of C₂H₂ zinc-finger binding specificity: sensitivity to docking geometry
Nucleic Acids Research Advance Access published on January 30, 2007
Nucl. Acids Res. 2007 35: 1085-1097; doi:10.1093/nar/gkl1155 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

Genomics:

Fabio Parisi, Pratyaksha Wirapati, and Felix Naef

Identifying synergistic regulation involving c-Myc and sp1 in human tissues
Nucleic Acids Research Advance Access published on January 30, 2007
Nucl. Acids Res. 2007 35: 1098-1107; doi:10.1093/nar/gkl1157 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

Karine Buchet-Poyau, Julien Courchet, Hervé Le Hir, Bertrand Séraphin, Jean-Yves Scoazec, Laurent Duret, Claire Domon-Dell, Jean-Noël Freund, and Marc Billaud

Identification and characterization of human Mex-3 proteins, a novel family of evolutionarily conserved RNA-binding proteins differentially localized to processing bodies
Nucleic Acids Research Advance Access published on January 31, 2007
Nucl. Acids Res. 2007 35: 1289-1300; doi:10.1093/nar/gkm016 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Molecular Biology:

Maria M. Krasilnikova, Maria L. Kireeva, Vladimir Petrovic, Nelli Knijnikova, Mikhail Kashlev, and Sergei M. Mirkin

Effects of Friedreich's ataxia (GAA)_n·(TTC)_n repeats on RNA synthesis and stability
Nucleic Acids Research Advance Access published on January 30, 2007
Nucl. Acids Res. 2007 35: 1075-1084; doi:10.1093/nar/gkl1140 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Melissa A. Brykailo, Anita H. Corbett, and Judith L. Fridovich-Keil

Functional overlap between conserved and diverged KH domains in Saccharomyces cerevisiae SCP160
Nucleic Acids Research Advance Access published on January 30, 2007
Nucl. Acids Res. 2007 35: 1108-1118; doi:10.1093/nar/gkl1160 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

Hiroyuki Sasanuma, Hajime Murakami, Tomoyuki Fukuda, Takehiko Shibata, Alain Nicolas, and Kunihiro Ohta

Meiotic association between Spo11 regulated by Rec102, Rec104 and Rec114
Nucleic Acids Research Advance Access published on January 30, 2007
Nucl. Acids Res. 2007 35: 1119-1133; doi:10.1093/nar/gkl1162 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Pierre-Jacques Hamard, Michaël Boyer-Guittaut, Barbara Camuzeaux, Denis Dujardin, Charlotte Hauss, Thomas Oelgeschläger, Marc Vigneron, Claude Kedinger, and Bruno Chatton

Sumoylation delays the ATF7 transcription factor subcellular localization and inhibits its transcriptional activity
Nucleic Acids Research Advance Access published on January 30, 2007
Nucl. Acids Res. 2007 35: 1134-1144; doi:10.1093/nar/gkl1168 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Mary Ann Genzer and Laura C. Bridgewater

A Col9a1 enhancer element activated by two interdependent SOX9 dimers
Nucleic Acids Research Advance Access published on January 30, 2007
Nucl. Acids Res. 2007 35: 1178-1186; doi:10.1093/nar/gkm014 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Shinya Takahashi, Kenji Kontani, Yasuhiro Araki, and Toshiaki Katada

Caf1 regulates translocation of ribonucleotide reductase by releasing nucleoplasmic Spd1–Suc22 assembly
Nucleic Acids Research Advance Access published on January 30, 2007
Nucl. Acids Res. 2007 35: 1187-1197; doi:10.1093/nar/gkm015 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Hiroshi Kogo, Hidehito Inagaki, Tamae Ohye, Takema Kato, Beverly S. Emanuel, and Hiroki Kurahashi

Cruciform extrusion propensity of human translocation-mediating palindromic AT-rich repeats
Nucleic Acids Research Advance Access published on January 30, 2007
Nucl. Acids Res. 2007 35: 1198-1208; doi:10.1093/nar/gkm036 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

José A. Ruiz-Masó, Rudi Lurz, Manuel Espinosa, and Gloria del Solar

Interactions between the RepB initiator protein of plasmid pMV158 and two distant DNA regions within the origin of replication
Nucleic Acids Research Advance Access published on January 31, 2007
Nucl. Acids Res. 2007 35: 1230-1244; doi:10.1093/nar/gkl1099 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

S. Renaud, D. Loukinov, Z. Abdullaev, I. Guilleret, F. T. Bosman, V. Lobanenkov, and J. Benhattar

Dual role of DNA methylation inside and outside of CTCF-binding regions in the transcriptional regulation of the telomerase hTERT gene
Nucleic Acids Research Advance Access published on January 31, 2007
Nucl. Acids Res. 2007 35: 1245-1256; doi:10.1093/nar/gkl1125 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Vilius Stribinskis and Kenneth S. Ramos

Rpm2p, a protein subunit of mitochondrial RNase P, physically and genetically interacts with cytoplasmic processing bodies
Nucleic Acids Research Advance Access published on January 31, 2007
Nucl. Acids Res. 2007 35: 1301-1311; doi:10.1093/nar/gkm023 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Alain Bruhat, Yoan Chérasse, Anne-Catherine Maurin, Wolfgang Breitwieser, Laurent Parry, Christiane Deval, Nic Jones, Céline Jousse, and Pierre Fafournoux

ATF2 is required for amino acid-regulated transcription by orchestrating specific histone acetylation
Nucleic Acids Research Advance Access published on January 31, 2007
Nucl. Acids Res. 2007 35: 1312-1321; doi:10.1093/nar/gkm038 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Moo Gak Hwang and Myeon Haeng Cho

Arabidopsis thaliana telomeric DNA-binding protein 1 is required for telomere length homeostasis and its Myb-extension domain stabilizes plant telomeric DNA binding
Nucleic Acids Research Advance Access published on January 31, 2007
Nucl. Acids Res. 2007 35: 1333-1342; doi:10.1093/nar/gkm043 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

Jinsong Chen, Fred F. Kadlubar, and Junjian Z. Chen

DNA supercoiling suppresses real-time PCR: a new approach to the quantification of mitochondrial DNA damage and repair
Nucleic Acids Research Advance Access published on February 5, 2007
Nucl. Acids Res. 2007 35: 1377-1388; doi:10.1093/nar/gkm010 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

Nucleic Acid Enzymes:

Jason L. Parsons, Bradley D. Preston, Timothy R. O'Connor, and Grigory L. Dianov

DNA polymerase -dependent repair of DNA single strand breaks containing 3'-end proximal lesions
Nucleic Acids Research Advance Access published on January 30, 2007
Nucl. Acids Res. 2007 35: 1054-1063; doi:10.1093/nar/gkl1115 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

William C. Drosopoulos and Vinayaka R. Prasad

The active site residue Valine 867 in human telomerase reverse transcriptase influences nucleotide incorporation and fidelity
Nucleic Acids Research Advance Access published on January 30, 2007
Nucl. Acids Res. 2007 35: 1155-1168; doi:10.1093/nar/gkm002 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Brian T. Weinert and Donald C. Rio

DNA strand displacement, strand annealing and strand swapping by the Drosophila Bloom's syndrome helicase
Nucleic Acids Research Advance Access published on February 1, 2007
Nucl. Acids Res. 2007 35: 1367-1376; doi:10.1093/nar/gkl831 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

RNA:

Michael Fisher, Mikhail Abramov, Arthur Van Aerschot, Dong Xu, Rudolph L. Juliano, and Piet Herdewijn

Inhibition of MDR1 expression with altritol-modified siRNAs
Nucleic Acids Research Advance Access published on January 30, 2007
Nucl. Acids Res. 2007 35: 1064-1074; doi:10.1093/nar/gkl1126 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

Dan Sparanese and Chow H. Lee

CRD-BP shields c-myc and MDR-1 RNA from endonucleolytic attack by a mammalian endoribonuclease
Nucleic Acids Research Advance Access published on January 30, 2007
Nucl. Acids Res. 2007 35: 1209-1221; doi:10.1093/nar/gkl1148 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Oliver Mayer, Lukas Rajkowitsch, Christina Lorenz, Robert Konrat, and Renée Schroeder

RNA chaperone activity and RNA-binding properties of the E. coli protein StpA
Nucleic Acids Research Advance Access published on January 31, 2007
Nucl. Acids Res. 2007 35: 1257-1269; doi:10.1093/nar/gkl1143 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Stephanie Herring, Alexandre Ambrogelly, Carla R. Polycarpo, and Dieter Söll

Recognition of pyrrolysine tRNA by the Desulfitobacterium hafniense pyrrolysyl-tRNA synthetase
Nucleic Acids Research Advance Access published on January 31, 2007
Nucl. Acids Res. 2007 35: 1270-1278; doi:10.1093/nar/gkl1151 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Klas I. Udekwu and E. Gerhart H. Wagner

Sigma E controls biogenesis of the antisense RNA MicA
Nucleic Acids Research Advance Access published on January 31, 2007
Nucl. Acids Res. 2007 35: 1279-1288; doi:10.1093/nar/gkl1154 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Eric J. Belfield, Richard K. Hughes, Nicolas Tsesmetzis, Mike J. Naldrett, and Rod Casey

The gateway pDEST17 expression vector encodes a –1 ribosomal frameshifting sequence
Nucleic Acids Research Advance Access published on January 31, 2007
Nucl. Acids Res. 2007 35: 1322-1332; doi:10.1093/nar/gkm003 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

Marlene Oeffinger, Alessandro Fatica, Michael P. Rout, and David Tollervey

Yeast Rrp14p is required for ribosomal subunit synthesis and for correct positioning of the mitotic spindle during mitosis
Nucleic Acids Research Advance Access published on February 1, 2007
Nucl. Acids Res. 2007 35: 1354-1366; doi:10.1093/nar/gkl824 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Structural Biology:

R. Jeremy H. Davies, John F. Malone, Yu Gan, Christine J. Cardin, Michael P.H. Lee, and Stephen Neidle

High-resolution crystal structure of the intramolecular d(TpA) thymine–adenine photoadduct and its mechanistic implications
Nucleic Acids Research Advance Access published on January 30, 2007
Nucl. Acids Res. 2007 35: 1048-1053; doi:10.1093/nar/gkl1101 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Ming-Rui Duan, Jie Nan, Yu-He Liang, Peng Mao, Lu Lu, Lanfen Li, Chunhong Wei, Luhua Lai, Yi Li, and Xiao-Dong Su

DNA binding mechanism revealed by high resolution crystal structure of Arabidopsis thaliana WRKY1 protein
Nucleic Acids Research Advance Access published on January 30, 2007
Nucl. Acids Res. 2007 35: 1145-1154; doi:10.1093/nar/gkm001 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Alison J. Hobro, Mansour Rouhi, Ewan W. Blanch, and Graeme L. Conn

Raman and Raman optical activity (ROA) analysis of RNA structural motifs in Domain I of the EMCV IRES
Nucleic Acids Research Advance Access published on January 30, 2007
Nucl. Acids Res. 2007 35: 1169-1177; doi:10.1093/nar/gkm012 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Gabriel Zoldák, Lars Redecke, Dmitri I. Svergun, Peter V. Konarev, C. Stefan Voertler, Holger Dobbek, Erik Sedlák, and Mathias Sprinzl

Release Factors 2 from Escherichia coli and Thermus thermophilus: structural, spectroscopic and microcalorimetric studies
Nucleic Acids Research Advance Access published on February 1, 2007
Nucl. Acids Res. 2007 35: 1343-1353; doi:10.1093/nar/gkl696 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Methods Online:

Jin-Ho Ahn, Mi-Yeon Hwang, Kyung-Ho Lee, Cha-Yong Choi, and Dong-Myung Kim

Use of signal sequences as an in situ removable sequence element to stimulate protein synthesis in cell-free extracts
Nucleic Acids Research Advance Access published on December 20, 2006
Nucl. Acids Res. 2007 35: e21; doi:10.1093/nar/gkl917 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Hoi Tang Ma, Kin Fan On, Yiu Huen Tsang, and Randy Y.C. Poon

An inducible system for expression and validation of the specificity of short hairpin RNA in mammalian cells
Nucleic Acids Research Advance Access published on January 18, 2007
Nucl. Acids Res. 2007 35: e22; doi:10.1093/nar/gkl1109 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Despina P. Kalogianni, Vasiliki Bravou, Theodore K. Christopoulos, Penelope C. Ioannou, and Nicholas C. Zoumbos

Dry-reagent disposable dipstick test for visual screening of seven leukemia-related chromosomal translocations
Nucleic Acids Research Advance Access published on January 23, 2007
Nucl. Acids Res. 2007 35: e23; doi:10.1093/nar/gkl1097 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Kenjyo Miyauchi, Tomoya Ohara, and Tsutomu Suzuki

Automated parallel isolation of multiple species of non-coding RNAs by the reciprocal circulating chromatography method
Nucleic Acids Research Advance Access published on January 23, 2007
Nucl. Acids Res. 2007 35: e24; doi:10.1093/nar/gkl1129 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

Stephanie Pfander, Roberto Fiammengo, Srecko I. Kirin, Nils Metzler-Nolte, and Andres Jäschke

Reversible site-specific tagging of enzymatically synthesized RNAs using aldehyde–hydrazine chemistry and protease-cleavable linkers
Nucleic Acids Research Advance Access published on January 26, 2007
Nucl. Acids Res. 2007 35: e25; doi:10.1093/nar/gkl1110 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

F. Peyrane, B. Selisko, E. Decroly, J. J. Vasseur, D. Benarroch, B. Canard, and K. Alvarez

High-yield production of short GpppA- and ^7MeGpppA-capped RNAs and HPLC-monitoring of methyltransfer reactions at the guanine-N7 and adenosine-2'O positions
Nucleic Acids Research Advance Access published on January 26, 2007
Nucl. Acids Res. 2007 35: e26; doi:10.1093/nar/gkl1119 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Takayuki Katoh and Tsutomu Suzuki

Specific residues at every third position of siRNA shape its efficient RNAi activity
Nucleic Acids Research Advance Access published on January 26, 2007
Nucl. Acids Res. 2007 35: e27; doi:10.1093/nar/gkl1120 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Material] [Request Permissions]  

Andrew Thompson, Mark Prescott, Noorhan Chelebi, John Smith, Tom Brown, and Günter Schmidt

Electrospray ionisation-cleavable tandem nucleic acid mass tag–peptide nucleic acid conjugates: synthesis and applications to quantitative genomic analysis using electrospray ionisation-MS/MS
Nucleic Acids Research Advance Access published on January 26, 2007
Nucl. Acids Res. 2007 35: e28; doi:10.1093/nar/gkl1123 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Corrigendum:

Julien Häsler and Katharina Strub

Survey and Summary: Alu elements as regulators of gene expression
Nucleic Acids Research Advance Access published on February 7, 2007
Nucl. Acids Res. 2007 35: 1389; doi:10.1093/nar/gkm044 [Extract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.