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Previous Next 		Contents: Volume 36, Number 4, March 2008   [Index by Author] 

Down Genomics
Down Molecular Biology
Down Nucleic Acid Enzymes
Down RNA
Down Structural Biology
Down Corrigendum
Down Methods Online


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To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

Genomics Back

Johanna Eddy and Nancy Maizels
Conserved elements with potential to form polymorphic G-quadruplex structures in the first intron of human genes
Nucleic Acids Research Advance Access published on January 10, 2008
Nucl. Acids Res. 2008 36: 1321-1333; doi:10.1093/nar/gkm1138 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Marcus Gry Björklund, Christian Natanaelsson, Amelie Eriksson Karlström, Yong Hao, and Joakim Lundeberg
Microarray analysis using disiloxyl 70mer oligonucleotides
Nucleic Acids Research Advance Access published on January 10, 2008
Nucl. Acids Res. 2008 36: 1334-1342; doi:10.1093/nar/gkm1145 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Molecular Biology Back

Miao Yu, Jian Wang, Wei Li, Yan Zhi Yuan, Chang Yan Li, Xiao Hong Qian, Wang Xiang Xu, Yi Qun Zhan, and Xiao Ming Yang
Proteomic screen defines the hepatocyte nuclear factor 1{alpha}-binding partners and identifies HMGB1 as a new cofactor of HNF1{alpha}
Nucleic Acids Research Advance Access published on December 26, 2007
Nucl. Acids Res. 2008 36: 1209-1219; doi:10.1093/nar/gkm1131 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Yaïr Botbol, Nidhanapati K. Raghavendra, Shaila Rahman, Alan Engelman, and Marc Lavigne
Chromatinized templates reveal the requirement for the LEDGF/p75 PWWP domain during HIV-1 integration in vitro
Nucleic Acids Research Advance Access published on January 3, 2008
Nucl. Acids Res. 2008 36: 1237-1246; doi:10.1093/nar/gkm1127 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Joel H. Tolentino, Tom J. Burke, Suparna Mukhopadhyay, W. Glenn McGregor, and Ashis K. Basu
Inhibition of DNA replication fork progression and mutagenic potential of 1, N6-ethenoadenine and 8-oxoguanine in human cell extracts
Nucleic Acids Research Advance Access published on January 9, 2008
Nucl. Acids Res. 2008 36: 1300-1308; doi:10.1093/nar/gkm1157 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Koji Kasahara, Sewon Ki, Kayo Aoyama, Hiroyuki Takahashi, and Tetsuro Kokubo
Saccharomyces cerevisiae HMO1 interacts with TFIID and participates in start site selection by RNA polymerase II
Nucleic Acids Research Advance Access published on January 10, 2008
Nucl. Acids Res. 2008 36: 1343-1357; doi:10.1093/nar/gkm1068 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Alberto Sola-Landa, Antonio Rodríguez-García, Alexander Kristian Apel, and Juan F. Martín
Target genes and structure of the direct repeats in the DNA-binding sequences of the response regulator PhoP in Streptomyces coelicolor
Nucleic Acids Research Advance Access published on January 10, 2008
Nucl. Acids Res. 2008 36: 1358-1368; doi:10.1093/nar/gkm1150 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Moonjung Hyun, Jihyun Lee, Kyungjin Lee, Alfred May, Vilhelm A. Bohr, and Byungchan Ahn
Longevity and resistance to stress correlate with DNA repair capacity in Caenorhabditis elegans
Nucleic Acids Research Advance Access published on January 18, 2008
Nucl. Acids Res. 2008 36: 1380-1389; doi:10.1093/nar/gkm1161 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Nucleic Acid Enzymes Back

R. Lynn Sherrer, Patrick O’Donoghue, and Dieter Söll
Characterization and evolutionary history of an archaeal kinase involved in selenocysteinyl-tRNA formation
Nucleic Acids Research Advance Access published on January 3, 2008
Nucl. Acids Res. 2008 36: 1247-1259; doi:10.1093/nar/gkm1134 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Sharon N. Finger and Tracy M. Bryan
Multiple DNA-binding sites in Tetrahymena telomerase
Nucleic Acids Research Advance Access published on January 3, 2008
Nucl. Acids Res. 2008 36: 1260-1272; doi:10.1093/nar/gkm866 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Nozomi Sakakibara, Rajesh Kasiviswanathan, Eugene Melamud, Mimi Han, Frederick P. Schwarz, and Zvi Kelman
Coupling of DNA binding and helicase activity is mediated by a conserved loop in the MCM protein
Nucleic Acids Research Advance Access published on January 9, 2008
Nucl. Acids Res. 2008 36: 1309-1320; doi:10.1093/nar/gkm1160 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Iwona A. Cymerman, Inn Chung, Benedikt M. Beckmann, Janusz M. Bujnicki, and Gregor Meiss
EXOG, a novel paralog of Endonuclease G in higher eukaryotes
Nucleic Acids Research Advance Access published on January 10, 2008
Nucl. Acids Res. 2008 36: 1369-1379; doi:10.1093/nar/gkm1169 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

RNA Back

Bu-Jun Shi, Robert H. Symons, and Peter Palukaitis
The cucumovirus 2b gene drives selection of inter-viral recombinants affecting the crossover site, the acceptor RNA and the rate of selection
Nucleic Acids Research Advance Access published on December 17, 2007
Nucl. Acids Res. 2008 36: 1057-1071; doi:10.1093/nar/gkm1036 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Jian Lu, Anders Esberg, Bo Huang, and Anders S. Byström
Kluyveromyces lactis {gamma}-toxin, a ribonuclease that recognizes the anticodon stem loop of tRNA
Nucleic Acids Research Advance Access published on December 20, 2007
Nucl. Acids Res. 2008 36: 1072-1080; doi:10.1093/nar/gkm1121 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Paul R. Clark, Jordan S. Pober, and Martin S. Kluger
Knockdown of TNFR1 by the sense strand of an ICAM-1 siRNA: dissection of an off-target effect
Nucleic Acids Research Advance Access published on December 20, 2007
Nucl. Acids Res. 2008 36: 1081-1097; doi:10.1093/nar/gkm630 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Cody Geary, Stéphanie Baudrey, and Luc Jaeger
Comprehensive features of natural and in vitro selected GNRA tetraloop-binding receptors
Nucleic Acids Research Advance Access published on December 23, 2007
Nucl. Acids Res. 2008 36: 1138-1152; doi:10.1093/nar/gkm1048 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Joacim Elmén, Morten Lindow, Asli Silahtaroglu, Mads Bak, Mette Christensen, Allan Lind-Thomsen, Maj Hedtjärn, Jens Bo Hansen, Henrik Frydenlund Hansen, Ellen Marie Straarup, Keith McCullagh, Phil Kearney, and Sakari Kauppinen
Antagonism of microRNA-122 in mice by systemically administered LNA-antimiR leads to up-regulation of a large set of predicted target mRNAs in the liver
Nucleic Acids Research Advance Access published on December 23, 2007
Nucl. Acids Res. 2008 36: 1153-1162; doi:10.1093/nar/gkm1113 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

P. Comella, F. Pontvianne, S. Lahmy, F. Vignols, N. Barbezier, A. DeBures, E. Jobet, E. Brugidou, M. Echeverria, and J. Sáez-Vásquez
Characterization of a ribonuclease III-like protein required for cleavage of the pre-rRNA in the 3'ETS in Arabidopsis
Nucleic Acids Research Advance Access published on December 23, 2007
Nucl. Acids Res. 2008 36: 1163-1175; doi:10.1093/nar/gkm1130 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Joanna A. M. Braks, Gunnar R. Mair, Blandine Franke-Fayard, Chris J. Janse, and Andrew P. Waters
A conserved U-rich RNA region implicated in regulation of translation in Plasmodium female gametocytes
Nucleic Acids Research Advance Access published on December 23, 2007
Nucl. Acids Res. 2008 36: 1176-1186; doi:10.1093/nar/gkm1142 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Ji Hyun Yang, Hyun Hee Seo, So Jung Han, Eun Kyung Yoon, Moon Sik Yang, and Woo Sung Lee
Phytohormone abscisic acid control RNA-dependent RNA polymerase 6 gene expression and post-transcriptional gene silencing in rice cells
Nucleic Acids Research Advance Access published on December 26, 2007
Nucl. Acids Res. 2008 36: 1220-1226; doi:10.1093/nar/gkm1133 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Nicholas J. Reiter, L. James Maher, III, and Samuel E. Butcher
DNA mimicry by a high-affinity anti-NF-{kappa}B RNA aptamer
Nucleic Acids Research Advance Access published on December 26, 2007
Nucl. Acids Res. 2008 36: 1227-1236; doi:10.1093/nar/gkm1141 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Gakuta Toba and Kalpana White
The third RNA recognition motif of Drosophila ELAV protein has a role in multimerization
Nucleic Acids Research Advance Access published on January 18, 2008
Nucl. Acids Res. 2008 36: 1390-1399; doi:10.1093/nar/gkm1168 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Structural Biology Back

Serguei V. Kuznetsov, Cha-Chi Ren, Sarah A. Woodson, and Anjum Ansari
Loop dependence of the stability and dynamics of nucleic acid hairpins
Nucleic Acids Research Advance Access published on December 20, 2007
Nucl. Acids Res. 2008 36: 1098-1112; doi:10.1093/nar/gkm1083 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Felicie F. Andersen, Bjarne Knudsen, Cristiano Luis Pinto Oliveira, Rikke F. Frøhlich, Dinna Krüger, Jörg Bungert, Mavis Agbandje-McKenna, Robert McKenna, Sissel Juul, Christopher Veigaard, Jørn Koch, John L. Rubinstein, Bernt Guldbrandtsen, Marianne S. Hede, Göran Karlsson, Anni H. Andersen, Jan Skov Pedersen, and Birgitta R. Knudsen
Assembly and structural analysis of a covalently closed nano-scale DNA cage
Nucleic Acids Research Advance Access published on December 20, 2007
Nucl. Acids Res. 2008 36: 1113-1119; doi:10.1093/nar/gkm1124 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Quan Du, Alexander Kotlyar, and Alexander Vologodskii
Kinking the double helix by bending deformation
Nucleic Acids Research Advance Access published on December 20, 2007
Nucl. Acids Res. 2008 36: 1120-1128; doi:10.1093/nar/gkm1125 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Li Guo, Yingang Feng, Zhenfeng Zhang, Hongwei Yao, Yuanming Luo, Jinfeng Wang, and Li Huang
Biochemical and structural characterization of Cren7, a novel chromatin protein conserved among Crenarchaea
Nucleic Acids Research Advance Access published on December 20, 2007
Nucl. Acids Res. 2008 36: 1129-1137; doi:10.1093/nar/gkm1128 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Yuhei Araiso, Sotiria Palioura, Ryuichiro Ishitani, R. Lynn Sherrer, Patrick O’Donoghue, Jing Yuan, Hiroyuki Oshikane, Naoshi Domae, Julian DeFranco, Dieter Söll, and Osamu Nureki
Structural insights into RNA-dependent eukaryal and archaeal selenocysteine formation
Nucleic Acids Research Advance Access published on December 23, 2007
Nucl. Acids Res. 2008 36: 1187-1199; doi:10.1093/nar/gkm1122 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Jun Tang, Zhong-yuan Kan, Yuan Yao, Quan Wang, Yu-hua Hao, and Zheng Tan
G-quadruplex preferentially forms at the very 3' end of vertebrate telomeric DNA
Nucleic Acids Research Advance Access published on December 23, 2007
Nucl. Acids Res. 2008 36: 1200-1208; doi:10.1093/nar/gkm1137 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Si-Han Chen, Carolyn K. Suzuki, and Shih-Hsiung Wu
Thermodynamic characterization of specific interactions between the human Lon protease and G-quartet DNA
Nucleic Acids Research Advance Access published on January 3, 2008
Nucl. Acids Res. 2008 36: 1273-1287; doi:10.1093/nar/gkm1140 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Ning Shen, Minyu Zhou, Bei Yang, Yadong Yu, Xianchi Dong, and Jianping Ding
Catalytic mechanism of the tryptophan activation reaction revealed by crystal structures of human tryptophanyl-tRNA synthetase in different enzymatic states
Nucleic Acids Research Advance Access published on January 7, 2008
Nucl. Acids Res. 2008 36: 1288-1299; doi:10.1093/nar/gkm1153 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Corrigendum Back

Chen-Ming Hsu, Chien-Yu Chen, and Baw-Jhiune Liu
Corrigendum
Nucleic Acids Research Advance Access published on January 4, 2008
Nucl. Acids Res. 2008 36: 1400-1406; doi:10.1093/nar/gkm717 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Methods Online Back

Vincenzo Venditti, Neri Niccolai, and Samuel E. Butcher
Measuring the dynamic surface accessibility of RNA with the small paramagnetic molecule TEMPOL
Nucleic Acids Research Advance Access published on December 1, 2007
Nucl. Acids Res. 2008 36: e20; doi:10.1093/nar/gkm1062 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Harm van Bakel, Folkert J. van Werven, Marijana Radonjic, Mariel O. Brok, Dik van Leenen, Frank C. P. Holstege, and H. T. Marc Timmers
Improved genome-wide localization by ChIP-chip using double-round T7 RNA polymerase-based amplification
Nucleic Acids Research Advance Access published on January 7, 2008
Nucl. Acids Res. 2008 36: e21; doi:10.1093/nar/gkm1144 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Ji Wan, Shuli Kang, Chuanning Tang, Jianhua Yan, Yongliang Ren, Jie Liu, Xiaolian Gao, Arindam Banerjee, Lynda B. M. Ellis, and Tongbin Li
Meta-prediction of phosphorylation sites with weighted voting and restricted grid search parameter selection
Nucleic Acids Research Advance Access published on January 30, 2008
Nucl. Acids Res. 2008 36: e22; doi:10.1093/nar/gkm848 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Yota B. Kiyohara, Keigo Nishii, Maki Ukai-Tadenuma, Hiroki R. Ueda, Yasuo Uchiyama, and Kazuhiro Yagita
Detection of a circadian enhancer in the mDbp promoter using prokaryotic transposon vector-based strategy
Nucleic Acids Research Advance Access published on February 5, 2008
Nucl. Acids Res. 2008 36: e23; doi:10.1093/nar/gkn018 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Robert J. Osborne and Charles A. Thornton
Cell-free cloning of highly expanded CTG repeats by amplification of dimerized expanded repeats
Nucleic Acids Research Advance Access published on February 7, 2008
Nucl. Acids Res. 2008 36: e24; doi:10.1093/nar/gkn025 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Gerardo Turcatti, Anthony Romieu, Milan Fedurco, and Ana-Paula Tairi
A new class of cleavable fluorescent nucleotides: synthesis and optimization as reversible terminators for DNA sequencing by synthesis
Nucleic Acids Research Advance Access published on February 7, 2008
Nucl. Acids Res. 2008 36: e25; doi:10.1093/nar/gkn021 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Daniel Shriner, Tesfaye M. Baye, Miguel A. Padilla, Shiju Zhang, Laura K. Vaughan, and Ann E. Loraine
Commonality of functional annotation: a method for prioritization of candidate genes from genome-wide linkage studies
Nucleic Acids Research Advance Access published on February 7, 2008
Nucl. Acids Res. 2008 36: e26; doi:10.1093/nar/gkn007 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.