Skip Navigation

Receive this page by email each issue: [Sign up for eTOCs]

Cover Image
[Cover Caption] 
Other Issues:
Previous Next 		Contents: Volume 36, Number 5, March 2008   [Index by Author] 

Down Chemistry
Down Computational Biology
Down Molecular Biology
Down Nucleic Acid Enzymes
Down RNA
Down Structural Biology
Down Methods Online


[Search ALL Issues]

Table of Contents (Print PDF)

To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

Chemistry Back

Takumi Ishizuka, Junya Yoshida, Yoji Yamamoto, Jun Sumaoka, Tullia Tedeschi, Roberto Corradini, Stefano Sforza, and Makoto Komiyama
Chiral introduction of positive charges to PNA for double-duplex invasion to versatile sequences
Nucleic Acids Research Advance Access published on January 18, 2008
Nucl. Acids Res. 2008 36: 1464-1471; doi:10.1093/nar/gkm1154 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Computational Biology Back

Dmitry B. Veprintsev and Alan R. Fersht
Algorithm for prediction of tumour suppressor p53 affinity for binding sites in DNA
Nucleic Acids Research Advance Access published on January 30, 2008
Nucl. Acids Res. 2008 36: 1589-1598; doi:10.1093/nar/gkm1040 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Molecular Biology Back

Paolo Benatti, Valentina Basile, Daniele Merico, Luca Isaia Fantoni, Enrico Tagliafico, and Carol Imbriano
A balance between NF-Y and p53 governs the pro- and anti-apoptotic transcriptional response
Nucleic Acids Research Advance Access published on January 10, 2008
Nucl. Acids Res. 2008 36: 1415-1428; doi:10.1093/nar/gkm1046 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Ekaterina Bogdanova, Marko Djordjevic, Ioanna Papapanagiotou, Tomasz Heyduk, Geoff Kneale, and Konstantin Severinov
Transcription regulation of the type II restriction-modification system AhdI
Nucleic Acids Research Advance Access published on January 18, 2008
Nucl. Acids Res. 2008 36: 1429-1442; doi:10.1093/nar/gkm1116 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Corinna Asang, Ilona Hauber, and Heiner Schaal
Insights into the selective activation of alternatively used splice acceptors by the human immunodeficiency virus type-1 bidirectional splicing enhancer
Nucleic Acids Research Advance Access published on January 18, 2008
Nucl. Acids Res. 2008 36: 1450-1463; doi:10.1093/nar/gkm1147 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Kan Jiang, Nadine Hein, Kolja Eckert, Juliane Lüscher-Firzlaff, and Bernhard Lüscher
Regulation of the MAD1 promoter by G-CSF
Nucleic Acids Research Advance Access published on January 18, 2008
Nucl. Acids Res. 2008 36: 1517-1531; doi:10.1093/nar/gkn002 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Amira Zaky, Carlos Busso, Tadahide Izumi, Ranajoy Chattopadhyay, Ahmad Bassiouny, Sankar Mitra, and Kishor K. Bhakat
Regulation of the human AP-endonuclease (APE1/Ref-1) expression by the tumor suppressor p53 in response to DNA damage
Nucleic Acids Research Advance Access published on January 21, 2008
Nucl. Acids Res. 2008 36: 1555-1566; doi:10.1093/nar/gkm1173 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Kate L. Jones, Secondo Sonza, and Johnson Mak
Primary T-lymphocytes rescue the replication of HIV-1 DIS RNA mutants in part by facilitating reverse transcription
Nucleic Acids Research Advance Access published on January 23, 2008
Nucl. Acids Res. 2008 36: 1578-1588; doi:10.1093/nar/gkm1149 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Bustanur Rosidi, Minli Wang, Wenqi Wu, Aparna Sharma, Huichen Wang, and George Iliakis
Histone H1 functions as a stimulatory factor in backup pathways of NHEJ
Nucleic Acids Research Advance Access published on February 3, 2008
Nucl. Acids Res. 2008 36: 1610-1623; doi:10.1093/nar/gkn013 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Christine Buerki, Karin M. Rothgiesser, Taras Valovka, Heather R. Owen, Hubert Rehrauer, Monika Fey, William S. Lane, and Michael O. Hottiger
Functional relevance of novel p300-mediated lysine 314 and 315 acetylation of RelA/p65
Nucleic Acids Research Advance Access published on February 7, 2008
Nucl. Acids Res. 2008 36: 1665-1680; doi:10.1093/nar/gkn003 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Ju Youn Beak, Hong Soon Kang, Yong-Sik Kim, and Anton M. Jetten
Functional analysis of the zinc finger and activation domains of Glis3 and mutant Glis3(NDH1)
Nucleic Acids Research Advance Access published on February 7, 2008
Nucl. Acids Res. 2008 36: 1690-1702; doi:10.1093/nar/gkn009 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Manuel Irimia and Scott William Roy
Spliceosomal introns as tools for genomic and evolutionary analysis
Nucleic Acids Research Advance Access published on February 7, 2008
Nucl. Acids Res. 2008 36: 1703-1712; doi:10.1093/nar/gkn012 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Ornella Cazzalini, Paola Perucca, Monica Savio, Daniela Necchi, Livia Bianchi, Lucia A. Stivala, Bernard Ducommun, A. Ivana Scovassi, and Ennio Prosperi
Interaction of p21CDKN1A with PCNA regulates the histone acetyltransferase activity of p300 in nucleotide excision repair
Nucleic Acids Research Advance Access published on February 7, 2008
Nucl. Acids Res. 2008 36: 1713-1722; doi:10.1093/nar/gkn014 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Hernan Roca and Renny T. Franceschi
Analysis of transcription factor interactions in osteoblasts using competitive chromatin immunoprecipitation
Nucleic Acids Research Advance Access published on February 7, 2008
Nucl. Acids Res. 2008 36: 1723-1730; doi:10.1093/nar/gkn022 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Gaëlle Pennarun, Christine Granotier, Françoise Hoffschir, Eliane Mandine, Denis Biard, Laurent R. Gauthier, and François D. Boussin
Role of ATM in the telomere response to the G-quadruplex ligand 360A
Nucleic Acids Research Advance Access published on February 7, 2008
Nucl. Acids Res. 2008 36: 1741-1754; doi:10.1093/nar/gkn026 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Nucleic Acid Enzymes Back

Neerja Kaushik-Basu, Alain Bopda-Waffo, Tanaji T. Talele, Amartya Basu, Paulo R. R. Costa, Alcides J. M. da Silva, Stefan G. Sarafianos, and François Noël
Identification and characterization of coumestans as novel HCV NS5B polymerase inhibitors
Nucleic Acids Research Advance Access published on January 18, 2008
Nucl. Acids Res. 2008 36: 1482-1496; doi:10.1093/nar/gkm1178 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Craig A. Howell, Christine M. Kondratick, and M. Todd Washington
Substitution of a residue contacting the triphosphate moiety of the incoming nucleotide increases the fidelity of yeast DNA polymerase {zeta}
Nucleic Acids Research Advance Access published on February 7, 2008
Nucl. Acids Res. 2008 36: 1731-1740; doi:10.1093/nar/gkn023 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

RNA Back

Kenny Schlosser, Jimmy Gu, Lauren Sule, and Yingfu Li
Sequence-function relationships provide new insight into the cleavage site selectivity of the 8–17 RNA-cleaving deoxyribozyme
Nucleic Acids Research Advance Access published on January 18, 2008
Nucl. Acids Res. 2008 36: 1472-1481; doi:10.1093/nar/gkm1175 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Rasa Rakauskaite and Jonathan D. Dinman
rRNA mutants in the yeast peptidyltransferase center reveal allosteric information networks and mechanisms of drug resistance
Nucleic Acids Research Advance Access published on January 18, 2008
Nucl. Acids Res. 2008 36: 1497-1507; doi:10.1093/nar/gkm1179 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Sudarshana Basu, Saikat Mukherjee, and Samit Adhya
Proton-guided movements of tRNA within the Leishmania mitochondrial RNA import complex
Nucleic Acids Research Advance Access published on February 3, 2008
Nucl. Acids Res. 2008 36: 1599-1609; doi:10.1093/nar/gkn010 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Simon Haile, Aurélien Dupé, and Barbara Papadopoulou
Deadenylation-independent stage-specific mRNA degradation in Leishmania
Nucleic Acids Research Advance Access published on February 3, 2008
Nucl. Acids Res. 2008 36: 1634-1644; doi:10.1093/nar/gkn019 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Veronica K. Coventry and Graeme L. Conn
Analysis of adenovirus VA RNAI structure and stability using compensatory base pair modifications
Nucleic Acids Research Advance Access published on February 3, 2008
Nucl. Acids Res. 2008 36: 1645-1653; doi:10.1093/nar/gkn020 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Tao Sun and Yi Zhang
Pentamidine binds to tRNA through non-specific hydrophobic interactions and inhibits aminoacylation and translation
Nucleic Acids Research Advance Access published on February 7, 2008
Nucl. Acids Res. 2008 36: 1654-1664; doi:10.1093/nar/gkm1180 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Structural Biology Back

Koen Robeyns, Piet Herdewijn, and Luc Van Meervelt
Influence of the incorporation of a cyclohexenyl nucleic acid (CeNA) residue onto the sequence d(CGCGAATTCGCG)
Nucleic Acids Research Advance Access published on December 26, 2007
Nucl. Acids Res. 2008 36: 1407-1414; doi:10.1093/nar/gkm1132 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Sudhir Husale, Wilfried Grange, Marc Karle, Stephan Bürgi, and Martin Hegner
Interaction of cationic surfactants with DNA: a single-molecule study
Nucleic Acids Research Advance Access published on January 18, 2008
Nucl. Acids Res. 2008 36: 1443-1449; doi:10.1093/nar/gkm1146 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Vineet Pande and Lennart Nilsson
Insights into structure, dynamics and hydration of locked nucleic acid (LNA) strand-based duplexes from molecular dynamics simulations
Nucleic Acids Research Advance Access published on January 18, 2008
Nucl. Acids Res. 2008 36: 1508-1516; doi:10.1093/nar/gkm1182 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Q. Zhao, J. Comer, V. Dimitrov, S. Yemenicioglu, A. Aksimentiev, and G. Timp
Stretching and unzipping nucleic acid hairpins using a synthetic nanopore
Nucleic Acids Research Advance Access published on January 21, 2008
Nucl. Acids Res. 2008 36: 1532-1541; doi:10.1093/nar/gkm1017 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Alexander B. Taylor, Britta Meyer, Belinda Z. Leal, Peter Kötter, Virgil Schirf, Borries Demeler, P. John Hart, Karl-Dieter Entian, and Jens Wöhnert
The crystal structure of Nep1 reveals an extended SPOUT-class methyltransferase fold and a pre-organized SAM-binding site
Nucleic Acids Research Advance Access published on January 21, 2008
Nucl. Acids Res. 2008 36: 1542-1554; doi:10.1093/nar/gkm1172 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Wen-Yih Jeng, Tzu-Ping Ko, Chia-I Liu, Rey-Ting Guo, Chien-Liang Liu, Hui-Lin Shr, and Andrew H.-J. Wang
Crystal structure of IcaR, a repressor of the TetR family implicated in biofilm formation in Staphylococcus epidermidis
Nucleic Acids Research Advance Access published on January 21, 2008
Nucl. Acids Res. 2008 36: 1567-1577; doi:10.1093/nar/gkm1176 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Aimee M. Eldridge and Deborah S. Wuttke
Probing the mechanism of recognition of ssDNA by the Cdc13-DBD
Nucleic Acids Research Advance Access published on February 3, 2008
Nucl. Acids Res. 2008 36: 1624-1633; doi:10.1093/nar/gkn017 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Martin Schwalbe, Oliver Ohlenschläger, Aliaksandr Marchanka, Ramadurai Ramachandran, Sabine Häfner, Tilman Heise, and Matthias Görlach
Solution structure of stem-loop {alpha} of the hepatitis B virus post-transcriptional regulatory element
Nucleic Acids Research Advance Access published on February 7, 2008
Nucl. Acids Res. 2008 36: 1681-1689; doi:10.1093/nar/gkn006 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Methods Online Back

Inhan Lee, Subramanian S. Ajay, Haiming Chen, Atsushi Maruyama, Nulang Wang, Melvin G. McInnis, and Brian D. Athey
Discriminating single-base difference miRNA expressions using microarray Probe Design Guru (ProDeG)
Nucleic Acids Research Advance Access published on January 21, 2008
Nucl. Acids Res. 2008 36: e27; doi:10.1093/nar/gkm1165 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Hicham Bouabe, Reinhard Fässler, and Jürgen Heesemann
Improvement of reporter activity by IRES-mediated polycistronic reporter system
Nucleic Acids Research Advance Access published on February 11, 2008
Nucl. Acids Res. 2008 36: e28; doi:10.1093/nar/gkm1119 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Yao Chi Chen and Carmay Lim
Predicting RNA-binding sites from the protein structure based on electrostatics, evolution and geometry
Nucleic Acids Research Advance Access published on February 14, 2008
Nucl. Acids Res. 2008 36: e29; doi:10.1093/nar/gkn008 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Won Jong Rhee, Philip J. Santangelo, Hanjoong Jo, and Gang Bao
Target accessibility and signal specificity in live-cell detection of BMP-4 mRNA using molecular beacons
Nucleic Acids Research Advance Access published on February 14, 2008
Nucl. Acids Res. 2008 36: e30; doi:10.1093/nar/gkn039 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Xiaohua Peng and Marc M. Greenberg
Facile SNP detection using bifunctional, cross-linking oligonucleotide probes
Nucleic Acids Research Advance Access published on February 16, 2008
Nucl. Acids Res. 2008 36: e31; doi:10.1093/nar/gkn052 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Melissa J. Fullwood, Jack J. S. Tan, Patrick W. P. Ng, Kuo Ping Chiu, Jun Liu, Chia Lin Wei, and Yijun Ruan
The use of multiple displacement amplification to amplify complex DNA libraries
Nucleic Acids Research Advance Access published on February 19, 2008
Nucl. Acids Res. 2008 36: e32; doi:10.1093/nar/gkn074 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Kuan Yang and Liqing Zhang
Performance comparison between k-tuple distance and four model-based distances in phylogenetic tree reconstruction
Nucleic Acids Research Advance Access published on February 22, 2008
Nucl. Acids Res. 2008 36: e33; doi:10.1093/nar/gkn075 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Christian Rohde, Yingying Zhang, Tomasz P. Jurkowski, Heinrich Stamerjohanns, Richard Reinhardt, and Albert Jeltsch
Bisulfite sequencing Data Presentation and Compilation (BDPC) web server—a useful tool for DNA methylation analysis
Nucleic Acids Research Advance Access published on February 22, 2008
Nucl. Acids Res. 2008 36: e34; doi:10.1093/nar/gkn083 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.