Nucleic Acids Research

Computational Biology

Get checked abstract Yong Wang, Xiang-Sun Zhang, and Yu Xia

Predicting eukaryotic transcriptional cooperativity by Bayesian network integration of genome-wide data
Nucleic Acids Research Advance Access published on August 6, 2009
Nucl. Acids Res. 2009 37: 5943-5958; doi:10.1093/nar/gkp625 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Roland Schwarz, Philipp N. Seibel, Sven Rahmann, Christoph Schoen, Mirja Huenerberg, Clemens Müller-Reible, Thomas Dandekar, Rachel Karchin, Jörg Schultz, and Tobias Müller

Detecting species-site dependencies in large multiple sequence alignments
Nucleic Acids Research Advance Access published on August 6, 2009
Nucl. Acids Res. 2009 37: 5959-5968; doi:10.1093/nar/gkp634 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Kang Tu, Hui Yu, You-Jia Hua, Yuan-Yuan Li, Lei Liu, Lu Xie, and Yi-Xue Li

Combinatorial network of primary and secondary microRNA-driven regulatory mechanisms
Nucleic Acids Research Advance Access published on August 10, 2009
Nucl. Acids Res. 2009 37: 5969-5980; doi:10.1093/nar/gkp638 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data] [Supplementary Data]  

Gene Regulation, Chromatin and Epigenetics

Get checked abstract Nan Zhang, Nicolas Joly, Patricia C. Burrows, Milija Jovanovic, Siva R. Wigneshweraraj, and Martin Buck

The role of the conserved phenylalanine in the ⁵⁴-interacting GAFTGA motif of bacterial enhancer binding proteins
Nucleic Acids Research Advance Access published on August 19, 2009
Nucl. Acids Res. 2009 37: 5981-5992; doi:10.1093/nar/gkp658 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Jongkyu Choi, Kyu Heo, and Woojin An

Cooperative action of TIP48 and TIP49 in H2A.Z exchange catalyzed by acetylation of nucleosomal H2A
Nucleic Acids Research Advance Access published on August 20, 2009
Nucl. Acids Res. 2009 37: 5993-6007; doi:10.1093/nar/gkp660 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract David Fenard, Laurent Houzet, Eric Bernard, Audrey Tupin, Sonia Brun, Marylène Mougel, Christian Devaux, Nathalie Chazal, and Laurence Briant

Uracil DNA Glycosylase 2 negatively regulates HIV-1 LTR transcription
Nucleic Acids Research Advance Access published on August 20, 2009
Nucl. Acids Res. 2009 37: 6008-6018; doi:10.1093/nar/gkp673 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Shin-Il Kim, Emery H. Bresnick, and Scott J. Bultman

BRG1 directly regulates nucleosome structure and chromatin looping of the globin locus to activate transcription
Nucleic Acids Research Advance Access published on August 20, 2009
Nucl. Acids Res. 2009 37: 6019-6027; doi:10.1093/nar/gkp677 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Genome Integrity, Repair and Replication

Get checked abstract Holger Stephan, Claire Concannon, Elisabeth Kremmer, Michael P. Carty, and Heinz-Peter Nasheuer

Ionizing radiation-dependent and independent phosphorylation of the 32-kDa subunit of replication protein A during mitosis
Nucleic Acids Research Advance Access published on August 11, 2009
Nucl. Acids Res. 2009 37: 6028-6041; doi:10.1093/nar/gkp605 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Michael N. Murphy, Peng Gong, Kenneth Ralto, Laura Manelyte, Nigel J. Savery, and Karsten Theis

An N-terminal clamp restrains the motor domains of the bacterial transcription-repair coupling factor Mfd
Nucleic Acids Research Advance Access published on August 21, 2009
Nucl. Acids Res. 2009 37: 6042-6053; doi:10.1093/nar/gkp680 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Helen Dodson and Ciaran G. Morrison

Increased sister chromatid cohesion and DNA damage response factor localization at an enzyme-induced DNA double-strand break in vertebrate cells
Nucleic Acids Research Advance Access published on August 21, 2009
Nucl. Acids Res. 2009 37: 6054-6063; doi:10.1093/nar/gkp684 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Aaron Mendez-Bermudez, Mark Hills, Hilda A. Pickett, Anh Tuân Phan, Jean-Louis Mergny, Jean-François Riou, and Nicola J. Royle

Human telomeres that contain (CTAGGG)_n repeats show replication dependent instability in somatic cells and the male germline
Nucleic Acids Research Advance Access published on August 5, 2009
Nucl. Acids Res. 2009 37: 6225-6238; doi:10.1093/nar/gkp629 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Genomics

Get checked abstract Benjamin Audit, Lamia Zaghloul, Cédric Vaillant, Guillaume Chevereau, Yves d'Aubenton-Carafa, Claude Thermes, and Alain Arneodo

Open chromatin encoded in DNA sequence is the signature of ‘master’ replication origins in human cells
Nucleic Acids Research Advance Access published on August 10, 2009
Nucl. Acids Res. 2009 37: 6064-6075; doi:10.1093/nar/gkp631 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Mingqun Lin, Chunbin Zhang, Kathryn Gibson, and Yasuko Rikihisa

Analysis of complete genome sequence of Neorickettsia risticii: causative agent of Potomac horse fever
Nucleic Acids Research Advance Access published on August 6, 2009
Nucl. Acids Res. 2009 37: 6076-6091; doi:10.1093/nar/gkp642 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Marina Mangiulli, Alessio Valletti, Mariano Francesco Caratozzolo, Apollonia Tullo, Elisabetta Sbisà, Graziano Pesole, and Anna Maria D’Erchia

Identification and functional characterization of two new transcriptional variants of the human p63 gene
Nucleic Acids Research Advance Access published on August 21, 2009
Nucl. Acids Res. 2009 37: 6092-6104; doi:10.1093/nar/gkp674 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Molecular Biology

Get checked abstract Nicholas S. Y. Ting, Brant Pohorelic, Yaping Yu, Susan P. Lees-Miller, and Tara L. Beattie

The human telomerase RNA component, hTR, activates the DNA-dependent protein kinase to phosphorylate heterogeneous nuclear ribonucleoprotein A1
Nucleic Acids Research Advance Access published on August 5, 2009
Nucl. Acids Res. 2009 37: 6105-6115; doi:10.1093/nar/gkp636 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Natalya Van Dyke, Brian F. Pickering, and Michael W. Van Dyke

Stm1p alters the ribosome association of eukaryotic elongation factor 3 and affects translation elongation
Nucleic Acids Research Advance Access published on August 7, 2009
Nucl. Acids Res. 2009 37: 6116-6125; doi:10.1093/nar/gkp645 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Itay Onn, Vincent Guacci, and Douglas E. Koshland

The zinc finger of Eco1 enhances its acetyltransferase activity during sister chromatid cohesion
Nucleic Acids Research Advance Access published on August 19, 2009
Nucl. Acids Res. 2009 37: 6126-6134; doi:10.1093/nar/gkp656 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Dmitri E. Andreev, Sergey E. Dmitriev, Ilya M. Terenin, Vladimir S. Prassolov, William C. Merrick, and Ivan N. Shatsky

Differential contribution of the m⁷G-cap to the 5' end-dependent translation initiation of mammalian mRNAs
Nucleic Acids Research Advance Access published on August 20, 2009
Nucl. Acids Res. 2009 37: 6135-6147; doi:10.1093/nar/gkp665 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Simon J. Wardle, Amanda Chan, and David B. Haniford

H-NS binds with high affinity to the Tn10 transpososome and promotes transpososome stabilization
Nucleic Acids Research Advance Access published on August 20, 2009
Nucl. Acids Res. 2009 37: 6148-6160; doi:10.1093/nar/gkp672 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Nucleic Acid Enzymes

Get checked abstract N. K. Bernstein, M. Hammel, R. S. Mani, M. Weinfeld, M. Pelikan, J. A. Tainer, and J. N. M. Glover

Mechanism of DNA substrate recognition by the mammalian DNA repair enzyme, Polynucleotide Kinase
Nucleic Acids Research Advance Access published on August 11, 2009
Nucl. Acids Res. 2009 37: 6161-6173; doi:10.1093/nar/gkp597 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Pernilla Lagerbäck, Evalena Andersson, Christer Malmberg, and Karin Carlson

Bacteriophage T4 endonuclease II, a promiscuous GIY-YIG nuclease, binds as a tetramer to two DNA substrates
Nucleic Acids Research Advance Access published on August 7, 2009
Nucl. Acids Res. 2009 37: 6174-6183; doi:10.1093/nar/gkp652 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

RNA

Get checked abstract Roman R. Stocsits, Harald Letsch, Jana Hertel, Bernhard Misof, and Peter F. Stadler

Accurate and efficient reconstruction of deep phylogenies from structured RNAs
Nucleic Acids Research Advance Access published on September 1, 2009
Nucl. Acids Res. 2009 37: 6184-6193; doi:10.1093/nar/gkp600 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Ying Poi Liu, Jens Gruber, Joost Haasnoot, Pavlina Konstantinova, and Ben Berkhout

RNAi-mediated inhibition of HIV-1 by targeting partially complementary viral sequences
Nucleic Acids Research Advance Access published on August 5, 2009
Nucl. Acids Res. 2009 37: 6194-6204; doi:10.1093/nar/gkp644 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Julia F. Hopkins, Subrata Panja, Stephanie A. N. McNeil, and Sarah A. Woodson

Effect of salt and RNA structure on annealing and strand displacement by Hfq
Nucleic Acids Research Advance Access published on August 11, 2009
Nucl. Acids Res. 2009 37: 6205-6213; doi:10.1093/nar/gkp646 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Susan E. Wurster, John Paul Bida, Yeng F. Her, and L. James Maher, III

Characterization of anti-NF-B RNA aptamer-binding specificity in vitro and in the yeast three-hybrid system
Nucleic Acids Research Advance Access published on August 20, 2009
Nucl. Acids Res. 2009 37: 6214-6224; doi:10.1093/nar/gkp670 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Structural Biology

Get checked abstract Kah Wai Lim, Patrizia Alberti, Aurore Guédin, Laurent Lacroix, Jean-François Riou, Nicola J. Royle, Jean-Louis Mergny, and Anh Tuân Phan

Sequence variant (CTAGGG)_n in the human telomere favors a G-quadruplex structure containing a G·C·G·C tetrad
Nucleic Acids Research Advance Access published on August 19, 2009
Nucl. Acids Res. 2009 37: 6239-6248; doi:10.1093/nar/gkp630 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Tsukasa Mashima, Akimasa Matsugami, Fumiko Nishikawa, Satoshi Nishikawa, and Masato Katahira

Unique quadruplex structure and interaction of an RNA aptamer against bovine prion protein
Nucleic Acids Research Advance Access published on August 7, 2009
Nucl. Acids Res. 2009 37: 6249-6258; doi:10.1093/nar/gkp647 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Yuzuru Itoh, Shiho Chiba, Shun-ichi Sekine, and Shigeyuki Yokoyama

Crystal structure of human selenocysteine tRNA
Nucleic Acids Research Advance Access published on August 19, 2009
Nucl. Acids Res. 2009 37: 6259-6268; doi:10.1093/nar/gkp648 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Kelly J. Neaves, Julian L. Huppert, Robert M. Henderson, and J. Michael Edwardson

Direct visualization of G-quadruplexes in DNA using atomic force microscopy
Nucleic Acids Research Advance Access published on August 20, 2009
Nucl. Acids Res. 2009 37: 6269-6275; doi:10.1093/nar/gkp679 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Synthetic Biology and Chemistry

Get checked abstract Wei Yang Seow, Yi-Yan Yang, and Andrew J. T. George

Oligopeptide-mediated gene transfer into mouse corneal endothelial cells: expression, design optimization, uptake mechanism and nuclear localization
Nucleic Acids Research Advance Access published on August 19, 2009
Nucl. Acids Res. 2009 37: 6276-6289; doi:10.1093/nar/gkp651 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Methods Online

Get checked abstract Markus Schmitt and Michael Pawlita

High-throughput detection and multiplex identification of cell contaminations
Nucleic Acids Research Advance Access published on July 9, 2009
Nucl. Acids Res. 2009 37: e119; doi:10.1093/nar/gkp581 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Peter Kötter, Julia E. Weigand, Britta Meyer, Karl-Dieter Entian, and Beatrix Suess

A fast and efficient translational control system for conditional expression of yeast genes
Nucleic Acids Research Advance Access published on July 10, 2009
Nucl. Acids Res. 2009 37: e120; doi:10.1093/nar/gkp578 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Andrew D. Kauffmann, Ryan J. Campagna, Chantal B. Bartels, and Jessica L. Childs-Disney

Improvement of RNA secondary structure prediction using RNase H cleavage and randomized oligonucleotides
Nucleic Acids Research Advance Access published on July 13, 2009
Nucl. Acids Res. 2009 37: e121; doi:10.1093/nar/gkp587 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Viktor Stein and Florian Hollfelder

An efficient method to assemble linear DNA templates for in vitro screening and selection systems
Nucleic Acids Research Advance Access published on July 17, 2009
Nucl. Acids Res. 2009 37: e122; doi:10.1093/nar/gkp589 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Dmitri Parkhomchuk, Tatiana Borodina, Vyacheslav Amstislavskiy, Maria Banaru, Linda Hallen, Sylvia Krobitsch, Hans Lehrach, and Alexey Soldatov

Transcriptome analysis by strand-specific sequencing of complementary DNA
Nucleic Acids Research Advance Access published on July 20, 2009
Nucl. Acids Res. 2009 37: e123; doi:10.1093/nar/gkp596 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Get checked abstract Jay Vyas, Michael R. Gryk, and Martin R. Schiller

VENN, a tool for titrating sequence conservation onto protein structures
Nucleic Acids Research Advance Access published on August 5, 2009
Nucl. Acids Res. 2009 37: e124; doi:10.1093/nar/gkp616 [Abstract] [FREE Full Text] [Print PDF][Screen PDF]  

Get checked abstract Paul Gaytán, Casandra Contreras-Zambrano, Mónica Ortiz-Alvarado, Alfredo Morales-Pablos, and Jorge Yáñez

TrimerDimer: an oligonucleotide-based saturation mutagenesis approach that removes redundant and stop codons
Nucleic Acids Research Advance Access published on September 25, 2009
Nucl. Acids Res. 2009 37: e125; doi:10.1093/nar/gkp602 [Abstract] [FREE Full Text] [Print PDF][Screen PDF] [Supplementary Data]  

Front-Matter/Back-Matter

Nucleic Acids Research: VOLUME 37 ISSUE 18 2009
Nucl. Acids Res. 2009 37: i; doi:10.1093/nar/gkp974 [Extract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Nucleic Acids Research
Nucl. Acids Res. 2009 37: ii; doi:10.1093/nar/gkp973 [Extract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

Subscriptions
Nucl. Acids Res. 2009 37: iii; doi:10.1093/nar/gkp975 [Extract] [FREE Full Text] [Print PDF][Screen PDF] [Request Permissions]  

To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.