Nucleic Acids Res: Most-Read Full-Text Articles
http://nar.oxfordjournals.org/
Most-read rankings are recalculated at the beginning of the month based on usage of full-text and PDF views for the previous month.2009-10-19<![CDATA[Four new type I restriction enzymes identified in Escherichia coli clinical isolates]]>
http://nar.oxfordjournals.org/cgi/content/short/33/13/e114?rss=1&ssource=mfc
Jul 21, 2005; 33:114-114 Methods Online]]>Julie K. A. Kasarjian, Yoshiaki Kodama, Masatake Iida, Katsura Matsuda, Junichi Ryu2005-07-2110.1093/nar/gni114Oxford University Press<![CDATA[A high throughput experimental approach to identify miRNA targets in human cells]]>
http://nar.oxfordjournals.org/cgi/content/short/gkp715v1?rss=1&ssource=mfc
Sep 4, 2009; 0:7151-715 Methods Online]]>Lu Ping Tan, Erwin Seinen, Gerben Duns, Debora de Jong, Ody C. M. Sibon, Sibrand Poppema, Bart-Jan Kroesen, Klaas Kok, Anke van den Berg2009-09-04Oxford University Press<![CDATA[A new mathematical model for relative quantification in real-time RT-PCR]]>
http://nar.oxfordjournals.org/cgi/content/short/29/9/e45?rss=1&ssource=mfc
May 1, 2001; 29:45-45 NAR Methods Online]]>Michael W. Pfaffl2001-05-0110.1093/nar/29.9.e45Oxford University Press<![CDATA[miRBase: microRNA sequences, targets and gene nomenclature]]>
http://nar.oxfordjournals.org/cgi/content/short/34/suppl_1/D140?rss=1&ssource=mfc
Jan 1, 2006; 34:140-144 Articles]]>Sam Griffiths-Jones, Russell J. Grocock, Stijn van Dongen, Alex Bateman, Anton J. Enright2006-01-0110.1093/nar/gkj112Oxford University Press<![CDATA[miRBase: tools for microRNA genomics]]>
http://nar.oxfordjournals.org/cgi/content/short/36/suppl_1/D154?rss=1&ssource=mfc
Jan 11, 2008; 36:154-158 Articles]]>Sam Griffiths-Jones, Harpreet Kaur Saini, Stijn van Dongen, Anton J. Enright2008-01-11Oxford University Press<![CDATA[Gapped BLAST and PSI-BLAST: a new generation of protein database search programs]]>
http://nar.oxfordjournals.org/cgi/content/short/25/17/3389?rss=1&ssource=mfc
Sep 1, 1997; 25:3389-3402 Reviews]]>SF Altschul, TL Madden, AA Schaffer, J Zhang, Z Zhang, W Miller, DJ Lipman1997-09-0110.1093/nar/25.17.3389Oxford University Press<![CDATA[MUSCLE: multiple sequence alignment with high accuracy and high throughput]]>
http://nar.oxfordjournals.org/cgi/content/short/32/5/1792?rss=1&ssource=mfc
Mar 19, 2004; 32:1792-1797 Articles]]>Robert C. Edgar2004-03-1910.1093/nar/gkh340Oxford University Press<![CDATA[The Pfam protein families database]]>
http://nar.oxfordjournals.org/cgi/content/short/36/suppl_1/D281?rss=1&ssource=mfc
Jan 11, 2008; 36:281-288 Articles]]>Robert D. Finn, John Tate, Jaina Mistry, Penny C. Coggill, Stephen John Sammut, Hans-Rudolf Hotz, Goran Ceric, Kristoffer Forslund, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman2008-01-11Oxford University Press<![CDATA[Real-time quantification of microRNAs by stem-loop RT-PCR]]>
http://nar.oxfordjournals.org/cgi/content/short/33/20/e179?rss=1&ssource=mfc
Nov 27, 2005; 33:179-179 Methods Online]]>Caifu Chen, Dana A. Ridzon, Adam J. Broomer, Zhaohui Zhou, Danny H. Lee, Julie T. Nguyen, Maura Barbisin, Nan Lan Xu, Vikram R. Mahuvakar, Mark R. Andersen, Kai Qin Lao, Kenneth J. Livak, Karl J. Guegler2005-11-2710.1093/nar/gni178Oxford University Press<![CDATA[In vivo expression and purification of aptamer-tagged small RNA regulators]]>
http://nar.oxfordjournals.org/cgi/content/short/gkp719v1?rss=1&ssource=mfc
Sep 2, 2009; 0:7191-719 Methods Online]]>Nelly Said, Renate Rieder, Robert Hurwitz, Jochen Deckert, Henning Urlaub, Jorg Vogel2009-09-02Oxford University Press<![CDATA[Darwinian evolution in the light of genomics]]>
http://nar.oxfordjournals.org/cgi/content/short/37/4/1011?rss=1&ssource=mfc
Mar 1, 2009; 37:1011-1034 Survey and Summary]]>Eugene V. Koonin2009-03-01Oxford University Press<![CDATA[Transcriptome analysis by strand-specific sequencing of complementary DNA]]>
http://nar.oxfordjournals.org/cgi/content/short/gkp596v1?rss=1&ssource=mfc
Oct 1, 2009; 37:123-123 Methods Online]]>Dmitri Parkhomchuk, Tatiana Borodina, Vyacheslav Amstislavskiy, Maria Banaru, Linda Hallen, Sylvia Krobitsch, Hans Lehrach, Alexey Soldatov2009-10-01Oxford University Press<![CDATA[Mfold web server for nucleic acid folding and hybridization prediction]]>
http://nar.oxfordjournals.org/cgi/content/short/31/13/3406?rss=1&ssource=mfc
Jul 1, 2003; 31:3406-3415 Articles]]>Michael Zuker2003-07-0110.1093/nar/gkg595Oxford University Press<![CDATA[Loop-mediated isothermal amplification of DNA]]>
http://nar.oxfordjournals.org/cgi/content/short/28/12/e63?rss=1&ssource=mfc
Jun 15, 2000; 28:63-63 NAR Methods Online]]>Tsugunori Notomi, Hiroto Okayama, Harumi Masubuchi, Toshihiro Yonekawa, Keiko Watanabe, Nobuyuki Amino, Tetsu Hase2000-06-1510.1093/nar/28.12.e63Oxford University Press<![CDATA[Short-hairpin RNAs delivered by lentiviral vector transduction trigger RIG-I-mediated IFN activation]]>
http://nar.oxfordjournals.org/cgi/content/short/gkp714v1?rss=1&ssource=mfc
Sep 3, 2009; 0:7141-714 RNA]]>Rachael Kenworthy, Diana Lambert, Feng Yang, Nan Wang, Zihong Chen, Haizhen Zhu, Fanxiu Zhu, Chen Liu, Kui Li, Hengli Tang2009-09-03Oxford University Press<![CDATA[A role for transportin in deposition of TTP to cytoplasmic RNA granules and mRNA decay]]>
http://nar.oxfordjournals.org/cgi/content/short/gkp717v1?rss=1&ssource=mfc
Sep 3, 2009; 0:7171-717 RNA]]>Wei-Lun Chang, Woan-Yuh Tarn2009-09-03Oxford University Press<![CDATA[In vivo methylation of mtDNA reveals the dynamics of protein-mtDNA interactions]]>
http://nar.oxfordjournals.org/cgi/content/short/gkp727v1?rss=1&ssource=mfc
Sep 9, 2009; 0:7271-727 Gene Regulation, Chromatin and Epigenetics]]>Adriana P. Rebelo, Sion L. Williams, Carlos T. Moraes2009-09-09Oxford University Press<![CDATA[The microRNA Registry]]>
http://nar.oxfordjournals.org/cgi/content/short/32/suppl_1/D109?rss=1&ssource=mfc
Jan 1, 2004; 32:109-111 Articles]]>Sam Griffiths-Jones2004-01-0110.1093/nar/gkh023Oxford University Press<![CDATA[Extracting transcription factor targets from ChIP-Seq data]]>
http://nar.oxfordjournals.org/cgi/content/short/gkp536v1?rss=1&ssource=mfc
Sep 1, 2009; 37:113-113 Methods Online]]>Geetu Tuteja, Peter White, Jonathan Schug, Klaus H. Kaestner2009-09-01Oxford University Press<![CDATA[Nucleic Acids Research annual Database Issue and the NAR online Molecular Biology Database Collection in 2009]]>
http://nar.oxfordjournals.org/cgi/content/short/37/suppl_1/D1?rss=1&ssource=mfc
Jan 1, 2009; 37:1-4 Articles]]>Michael Y. Galperin, Guy R. Cochrane2009-01-01Oxford University Press<![CDATA[Real-time PCR in virology]]>
http://nar.oxfordjournals.org/cgi/content/short/30/6/1292?rss=1&ssource=mfc
Mar 15, 2002; 30:1292-1305 Articles]]>Ian M. Mackay, Katherine E. Arden, Andreas Nitsche2002-03-1510.1093/nar/30.6.1292Oxford University Press<![CDATA[PicoGreen quantitation of DNA: effective evaluation of samples pre- or post-PCR]]>
http://nar.oxfordjournals.org/cgi/content/short/24/13/2623?rss=1&ssource=mfc
Jul 1, 1996; 24:2623-2625 Articles]]>SJ Ahn, J Costa, JR Emanuel1996-07-0110.1093/nar/24.13.2623Oxford University Press<![CDATA[Rapid prototyping of 3D DNA-origami shapes with caDNAno]]>
http://nar.oxfordjournals.org/cgi/content/short/37/15/5001?rss=1&ssource=mfc
Aug 1, 2009; 37:5001-5006 Chemistry and Synthetic Biology]]>Shawn M. Douglas, Adam H. Marblestone, Surat Teerapittayanon, Alejandro Vazquez, George M. Church, William M. Shih2009-08-01Oxford University Press<![CDATA[MBNL and CELF proteins regulate alternative splicing of the skeletal muscle chloride channel CLCN1]]>
http://nar.oxfordjournals.org/cgi/content/short/gkp681v1?rss=1&ssource=mfc
Aug 31, 2009; 0:6811-681 Molecular Biology]]>Yoshihiro Kino, Chika Washizu, Yoko Oma, Hayato Onishi, Yuriko Nezu, Noboru Sasagawa, Nobuyuki Nukina, Shoichi Ishiura2009-08-31Oxford University Press<![CDATA[The complete DNA sequence and analysis of R27, a large IncHI plasmid from Salmonella typhi that is temperature sensitive for transfer]]>
http://nar.oxfordjournals.org/cgi/content/short/28/10/2177?rss=1&ssource=mfc
May 15, 2000; 28:2177-2186 Articles]]>Craig K. Sherburne, Trevor D. Lawley, Matthew W. Gilmour, F. R. Blattner, Valerie Burland, Erik Grotbeck, Debra J. Rose, Diane E. Taylor2000-05-1510.1093/nar/28.10.2177Oxford University Press<![CDATA[The microRNA.org resource: targets and expression]]>
http://nar.oxfordjournals.org/cgi/content/short/36/suppl_1/D149?rss=1&ssource=mfc
Jan 11, 2008; 36:149-153 Articles]]>Doron Betel, Manda Wilson, Aaron Gabow, Debora S. Marks, Chris Sander2008-01-11Oxford University Press<![CDATA[An efficient procedure for genotyping single nucleotide polymorphisms]]>
http://nar.oxfordjournals.org/cgi/content/short/29/17/e88?rss=1&ssource=mfc
Sep 1, 2001; 29:88-88 NAR Methods Online]]>Shu Ye, Sahar Dhillon, Xiayi Ke, Andrew R. Collins, Ian N. M. Day2001-09-0110.1093/nar/29.17.e88Oxford University Press<![CDATA[Gene Expression Omnibus: NCBI gene expression and hybridization array data repository]]>
http://nar.oxfordjournals.org/cgi/content/short/30/1/207?rss=1&ssource=mfc
Jan 1, 2002; 30:207-210 Articles]]>Ron Edgar, Michael Domrachev, Alex E. Lash2002-01-0110.1093/nar/30.1.207Oxford University Press<![CDATA[Systematic identification and characterization of chicken (Gallus gallus) ncRNAs]]>
http://nar.oxfordjournals.org/cgi/content/short/gkp704v1?rss=1&ssource=mfc
Aug 31, 2009; 0:7041-704 RNA]]>Yong Zhang, Jie Wang, Shoujun Huang, Xiaopeng Zhu, Jun Liu, Ning Yang, Dandan Song, Rimao Wu, Wei Deng, Geir Skogerbo, Xiu-Jie Wang, Runsheng Chen, Dahai Zhu2009-08-31Oxford University Press<![CDATA[The COG database: a tool for genome-scale analysis of protein functions and evolution]]>
http://nar.oxfordjournals.org/cgi/content/short/28/1/33?rss=1&ssource=mfc
Jan 1, 2000; 28:33-36 Articles]]>Roman L. Tatusov, Michael Y. Galperin, Darren A. Natale, Eugene V. Koonin2000-01-0110.1093/nar/28.1.33Oxford University Press<![CDATA[Betaine improves the PCR amplification of GC-rich DNA sequences]]>
http://nar.oxfordjournals.org/cgi/content/short/25/19/3957?rss=1&ssource=mfc
Oct 1, 1997; 25:3957-3958 Articles]]>W Henke, K Herdel, K Jung, D Schnorr, SA Loening1997-10-0110.1093/nar/25.19.3957Oxford University Press<![CDATA[Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data]]>
http://nar.oxfordjournals.org/cgi/content/short/36/16/5221?rss=1&ssource=mfc
Sep 1, 2008; 36:5221-5231 Computational Biology]]>Raja Jothi, Suresh Cuddapah, Artem Barski, Kairong Cui, Keji Zhao2008-09-01Oxford University Press<![CDATA[A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes]]>
http://nar.oxfordjournals.org/cgi/content/short/31/7/1805?rss=1&ssource=mfc
Apr 1, 2003; 31:1805-1812 Articles]]>Richard J. Roberts, Marlene Belfort, Timothy Bestor, Ashok S. Bhagwat, Thomas A. Bickle, Jurate Bitinaite, Robert M. Blumenthal, Sergey Kh. Degtyarev, David T. F. Dryden, Kevin Dybvig, Keith Firman, Elizaveta S. Gromova, Richard I. Gumport, Stephen E. Halford, Stanley Hattman, Joseph Heitman, David P. Hornby, Arvydas Janulaitis, Albert Jeltsch, Jytte Josephsen, Antal Kiss, Todd R. Klaenhammer, Ichizo Kobayashi, Huimin Kong, Detlev H. Kruger, Sanford Lacks, Martin G. Marinus, Michiko Miyahara, Richard D. Morgan, Noreen E. Murray, Valakunja Nagaraja, Andrzej Piekarowicz, Alfred Pingoud, Elisabeth Raleigh, Desirazu N. Rao, Norbert Reich, Vladimir E. Repin, Eric U. Selker, Pang-Chui Shaw, Daniel C. Stein, Barry L. Stoddard, Waclaw Szybalski, Thomas A. Trautner, James L. Van Etten, Jorge M. B. Vitor, Geoffrey G. Wilson, Shuang-yong Xu2003-04-0110.1093/nar/gkg274Oxford University Press<![CDATA[The elimination of primer-dimer accumulation in PCR]]>
http://nar.oxfordjournals.org/cgi/content/short/25/16/3235?rss=1&ssource=mfc
Aug 15, 1997; 25:3235-3241 Articles]]>J Brownie, S Shawcross, J Theaker, D Whitcombe, R Ferrie, C Newton, S Little1997-08-1510.1093/nar/25.16.3235Oxford University Press<![CDATA[Gains and unexpected lessons from genome-scale promoter mapping]]>
http://nar.oxfordjournals.org/cgi/content/short/37/15/4919?rss=1&ssource=mfc
Aug 1, 2009; 37:4919-4931 Computational Biology]]>K. S. Shavkunov, I. S. Masulis, M. N. Tutukina, A. A. Deev, O. N. Ozoline2009-08-01Oxford University Press<![CDATA[Pyrosequencing of small non-coding RNAs in HIV-1 infected cells: evidence for the processing of a viral-cellular double-stranded RNA hybrid]]>
http://nar.oxfordjournals.org/cgi/content/short/gkp707v1?rss=1&ssource=mfc
Sep 3, 2009; 0:7071-707 RNA]]>Man Lung Yeung, Yamina Bennasser, Koichi Watashi, Shu-Yun Le, Laurent Houzet, Kuan-Teh Jeang2009-09-03Oxford University Press<![CDATA[Herpesvirus protein ICP27 switches PML isoform by altering mRNA splicing]]>
http://nar.oxfordjournals.org/cgi/content/short/gkp633v1?rss=1&ssource=mfc
Sep 3, 2009; 0:6331-633 RNA]]>Takayuki Nojima, Takako Oshiro-Ideue, Hiroto Nakanoya, Hidenobu Kawamura, Tomomi Morimoto, Yasushi Kawaguchi, Naoyuki Kataoka, Masatoshi Hagiwara2009-09-03Oxford University Press<![CDATA[COBRA: a sensitive and quantitative DNA methylation assay]]>
http://nar.oxfordjournals.org/cgi/content/short/25/12/2532?rss=1&ssource=mfc
Jun 15, 1997; 25:2532-2534 Articles]]>Z Xiong, PW Laird1997-06-1510.1093/nar/25.12.2532Oxford University Press<![CDATA[Single nucleotide polymorphism arrays: a decade of biological, computational and technological advances]]>
http://nar.oxfordjournals.org/cgi/content/short/37/13/4181?rss=1&ssource=mfc
Jul 1, 2009; 37:4181-4193 Survey and Summary]]>Thomas LaFramboise2009-07-01Oxford University Press<![CDATA[Detection of single nucleotide variations in expressed exons of the human genome using RNA-Seq]]>
http://nar.oxfordjournals.org/cgi/content/short/gkp507v1?rss=1&ssource=mfc
Sep 1, 2009; 37:106-106 Methods Online]]>Iouri Chepelev, Gang Wei, Qingsong Tang, Keji Zhao2009-09-01Oxford University Press<![CDATA[OPTIMIZER: a web server for optimizing the codon usage of DNA sequences]]>
http://nar.oxfordjournals.org/cgi/content/short/gkm219v1?rss=1&ssource=mfc
Jul 13, 2007; 35:126-131 Articles]]>Pere Puigbo, Eduard Guzman, Antoni Romeu, Santiago Garcia-Vallve2007-07-13Oxford University Press<![CDATA[TM-align: a protein structure alignment algorithm based on the TM-score]]>
http://nar.oxfordjournals.org/cgi/content/short/33/7/2302?rss=1&ssource=mfc
Apr 22, 2005; 33:2302-2309 Articles]]>Yang Zhang, Jeffrey Skolnick2005-04-2210.1093/nar/gki524Oxford University Press<![CDATA[SIFT: predicting amino acid changes that affect protein function]]>
http://nar.oxfordjournals.org/cgi/content/short/31/13/3812?rss=1&ssource=mfc
Jul 1, 2003; 31:3812-3814 Articles]]>Pauline C. Ng, Steven Henikoff2003-07-0110.1093/nar/gkg509Oxford University Press<![CDATA[Relative expression software tool (REST(C)) for group-wise comparison and statistical analysis of relative expression results in real-time PCR]]>
http://nar.oxfordjournals.org/cgi/content/short/30/9/e36?rss=1&ssource=mfc
May 1, 2002; 30:36-36 NAR Methods Online]]>Michael W. Pfaffl, Graham W. Horgan, Leo Dempfle2002-05-0110.1093/nar/30.9.e36Oxford University Press<![CDATA[Current tools for the identification of miRNA genes and their targets]]>
http://nar.oxfordjournals.org/cgi/content/short/37/8/2419?rss=1&ssource=mfc
May 1, 2009; 37:2419-2433 Survey and Summary]]>N. D. Mendes, A. T. Freitas, M.-F. Sagot2009-05-01Oxford University Press<![CDATA[Summaries of Affymetrix GeneChip probe level data]]>
http://nar.oxfordjournals.org/cgi/content/short/31/4/e15?rss=1&ssource=mfc
Feb 15, 2003; 31:15-15 NAR Methods Online]]>Rafael A. Irizarry, Benjamin M. Bolstad, Francois Collin, Leslie M. Cope, Bridget Hobbs, Terence P. Speed2003-02-1510.1093/nar/gng015Oxford University Press<![CDATA[Functional significance of the Rad51-Srs2 complex in Rad51 presynaptic filament disruption]]>
http://nar.oxfordjournals.org/cgi/content/short/gkp748v1?rss=1&ssource=mfc
Sep 10, 2009; 0:7481-748 Genome Integrity, Repair and Replication]]>Sierra Colavito, Margaret Macris-Kiss, Changhyun Seong, Olive Gleeson, Eric C. Greene, Hannah L. Klein, Lumir Krejci, Patrick Sung2009-09-10Oxford University Press<![CDATA[Cancer siRNA therapy by tumor selective delivery with ligand-targeted sterically stabilized nanoparticle]]>
http://nar.oxfordjournals.org/cgi/content/short/32/19/e149?rss=1&ssource=mfc
Nov 1, 2004; 32:149-149 Methods Online]]>Raymond M. Schiffelers, Aslam Ansari, Jun Xu, Qin Zhou, Qingquan Tang, Gert Storm, Grietje Molema, Patrick Y. Lu, Puthupparampil V. Scaria, Martin C. Woodle2004-11-0110.1093/nar/gnh140Oxford University Press<![CDATA[TRANSFAC: a database on transcription factors and their DNA binding sites]]>
http://nar.oxfordjournals.org/cgi/content/short/24/1/238?rss=1&ssource=mfc
Jan 1, 1996; 24:238-241 Articles]]>E Wingender, P Dietze, H Karas, R Knuppel1996-01-0110.1093/nar/24.1.238Oxford University Press<![CDATA[SWISS-MODEL: an automated protein homology-modeling server]]>
http://nar.oxfordjournals.org/cgi/content/short/31/13/3381?rss=1&ssource=mfc
Jul 1, 2003; 31:3381-3385 Articles]]>Torsten Schwede, Jurgen Kopp, Nicolas Guex, Manuel C. Peitsch2003-07-0110.1093/nar/gkg520Oxford University Press