Nucleic Acids Res: Most-Read Full-Text Articles
http://nar.oxfordjournals.org/
Most-read rankings are recalculated at the beginning of the month based on usage of full-text and PDF views for the previous month.2009-11-16<![CDATA[miRBase: microRNA sequences, targets and gene nomenclature]]>
http://nar.oxfordjournals.org/cgi/content/short/34/suppl_1/D140?rss=1&ssource=mfc
Jan 1, 2006; 34:140-144 Articles]]>Sam Griffiths-Jones, Russell J. Grocock, Stijn van Dongen, Alex Bateman, Anton J. Enright2006-01-0110.1093/nar/gkj112Oxford University Press<![CDATA[A new mathematical model for relative quantification in real-time RT-PCR]]>
http://nar.oxfordjournals.org/cgi/content/short/29/9/e45?rss=1&ssource=mfc
May 1, 2001; 29:45-45 NAR Methods Online]]>Michael W. Pfaffl2001-05-0110.1093/nar/29.9.e45Oxford University Press<![CDATA[Analysis of any point mutation in DNA. The amplification refractory mutation system (ARMS)]]>
http://nar.oxfordjournals.org/cgi/content/short/17/7/2503?rss=1&ssource=mfc
Apr 11, 1989; 17:2503-2516 ]]>C.R. Newton, A. Graham, L.E. Heptinstall, S.J. Powell, C Summers, N. Kalsheker, J.C. Smith, A.F. Markham1989-04-1110.1093/nar/17.7.2503Oxford University Press<![CDATA[MUSCLE: multiple sequence alignment with high accuracy and high throughput]]>
http://nar.oxfordjournals.org/cgi/content/short/32/5/1792?rss=1&ssource=mfc
Mar 19, 2004; 32:1792-1797 Articles]]>Robert C. Edgar2004-03-1910.1093/nar/gkh340Oxford University Press<![CDATA[Gapped BLAST and PSI-BLAST: a new generation of protein database search programs]]>
http://nar.oxfordjournals.org/cgi/content/short/25/17/3389?rss=1&ssource=mfc
Sep 1, 1997; 25:3389-3402 Reviews]]>SF Altschul, TL Madden, AA Schaffer, J Zhang, Z Zhang, W Miller, DJ Lipman1997-09-0110.1093/nar/25.17.3389Oxford University Press<![CDATA[A simple method for directional transcriptome sequencing using Illumina technology]]>
http://nar.oxfordjournals.org/cgi/content/short/gkp811v1?rss=1&ssource=mfc
Oct 8, 2009; 0:8111-811 Methods Online]]>Nicholas J. Croucher, Maria C. Fookes, Timothy T. Perkins, Daniel J. Turner, Samuel B. Marguerat, Thomas Keane, Michael A. Quail, Miao He, Sammey Assefa, Jurg Bahler, Robert A. Kingsley, Julian Parkhill, Stephen D. Bentley, Gordon Dougan, Nicholas R. Thomson2009-10-08Oxford University Press<![CDATA[miRBase: tools for microRNA genomics]]>
http://nar.oxfordjournals.org/cgi/content/short/36/suppl_1/D154?rss=1&ssource=mfc
Jan 11, 2008; 36:154-158 Articles]]>Sam Griffiths-Jones, Harpreet Kaur Saini, Stijn van Dongen, Anton J. Enright2008-01-11Oxford University Press<![CDATA[Expanded RNA-binding activities of mammalian Argonaute 2]]>
http://nar.oxfordjournals.org/cgi/content/short/gkp812v1?rss=1&ssource=mfc
Oct 6, 2009; 0:8121-812 Molecular Biology]]>Grace S. Tan, Barry G. Garchow, Xuhang Liu, Jennifer Yeung, John P. Morris IV, Trinna L. Cuellar, Michael T. McManus, Marianthi Kiriakidou2009-10-06Oxford University Press<![CDATA[The Pfam protein families database]]>
http://nar.oxfordjournals.org/cgi/content/short/36/suppl_1/D281?rss=1&ssource=mfc
Jan 11, 2008; 36:281-288 Articles]]>Robert D. Finn, John Tate, Jaina Mistry, Penny C. Coggill, Stephen John Sammut, Hans-Rudolf Hotz, Goran Ceric, Kristoffer Forslund, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman2008-01-11Oxford University Press<![CDATA[Real-time quantification of microRNAs by stem-loop RT-PCR]]>
http://nar.oxfordjournals.org/cgi/content/short/33/20/e179?rss=1&ssource=mfc
Nov 27, 2005; 33:179-179 Methods Online]]>Caifu Chen, Dana A. Ridzon, Adam J. Broomer, Zhaohui Zhou, Danny H. Lee, Julie T. Nguyen, Maura Barbisin, Nan Lan Xu, Vikram R. Mahuvakar, Mark R. Andersen, Kai Qin Lao, Kenneth J. Livak, Karl J. Guegler2005-11-2710.1093/nar/gni178Oxford University Press<![CDATA[TransmiR: a transcription factor-microRNA regulation database]]>
http://nar.oxfordjournals.org/cgi/content/short/gkp803v1?rss=1&ssource=mfc
Sep 28, 2009; 0:8031-803 Database Issue]]>Juan Wang, Ming Lu, Chengxiang Qiu, Qinghua Cui2009-09-28Oxford University Press<![CDATA[Molecular interactions between HNF4a, FOXA2 and GABP identified at regulatory DNA elements through ChIP-sequencing]]>
http://nar.oxfordjournals.org/cgi/content/short/gkp823v1?rss=1&ssource=mfc
Oct 12, 2009; 0:8231-823 Genomics]]>Ola Wallerman, Mehdi Motallebipour, Stefan Enroth, Kalicharan Patra, Madhu Sudhan Reddy Bysani, Jan Komorowski, Claes Wadelius2009-10-12Oxford University Press<![CDATA[PMRD: plant microRNA database]]>
http://nar.oxfordjournals.org/cgi/content/short/gkp818v1?rss=1&ssource=mfc
Oct 6, 2009; 0:8181-818 Database Issue]]>Zhenhai Zhang, Jingyin Yu, Daofeng Li, Zuyong Zhang, Fengxia Liu, Xin Zhou, Tao Wang, Yi Ling, Zhen Su2009-10-06Oxford University Press<![CDATA[Mfold web server for nucleic acid folding and hybridization prediction]]>
http://nar.oxfordjournals.org/cgi/content/short/31/13/3406?rss=1&ssource=mfc
Jul 1, 2003; 31:3406-3415 Articles]]>Michael Zuker2003-07-0110.1093/nar/gkg595Oxford University Press<![CDATA[A high throughput experimental approach to identify miRNA targets in human cells]]>
http://nar.oxfordjournals.org/cgi/content/short/gkp715v1?rss=1&ssource=mfc
Nov 1, 2009; 37:137-137 Methods Online]]>Lu Ping Tan, Erwin Seinen, Gerben Duns, Debora de Jong, Ody C. M. Sibon, Sibrand Poppema, Bart-Jan Kroesen, Klaas Kok, Anke van den Berg2009-11-01Oxford University Press<![CDATA[Loop-mediated isothermal amplification of DNA]]>
http://nar.oxfordjournals.org/cgi/content/short/28/12/e63?rss=1&ssource=mfc
Jun 15, 2000; 28:63-63 NAR Methods Online]]>Tsugunori Notomi, Hiroto Okayama, Harumi Masubuchi, Toshihiro Yonekawa, Keiko Watanabe, Nobuyuki Amino, Tetsu Hase2000-06-1510.1093/nar/28.12.e63Oxford University Press<![CDATA[Did DNA replication evolve twice independently?]]>
http://nar.oxfordjournals.org/cgi/content/short/27/17/3389?rss=1&ssource=mfc
Sep 1, 1999; 27:3389-3401 Articles]]>DD Leipe, L Aravind, EV Koonin1999-09-0110.1093/nar/27.17.3389Oxford University Press<![CDATA[The microRNA Registry]]>
http://nar.oxfordjournals.org/cgi/content/short/32/suppl_1/D109?rss=1&ssource=mfc
Jan 1, 2004; 32:109-111 Articles]]>Sam Griffiths-Jones2004-01-0110.1093/nar/gkh023Oxford University Press<![CDATA[PicoGreen quantitation of DNA: effective evaluation of samples pre- or post-PCR]]>
http://nar.oxfordjournals.org/cgi/content/short/24/13/2623?rss=1&ssource=mfc
Jul 1, 1996; 24:2623-2625 Articles]]>SJ Ahn, J Costa, JR Emanuel1996-07-0110.1093/nar/24.13.2623Oxford University Press<![CDATA[SIFT: predicting amino acid changes that affect protein function]]>
http://nar.oxfordjournals.org/cgi/content/short/31/13/3812?rss=1&ssource=mfc
Jul 1, 2003; 31:3812-3814 Articles]]>Pauline C. Ng, Steven Henikoff2003-07-0110.1093/nar/gkg509Oxford University Press<![CDATA[A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation]]>
http://nar.oxfordjournals.org/cgi/content/short/gkp668v1?rss=1&ssource=mfc
Sep 28, 2009; 0:6681-668 RNA]]>Thomas Geissmann, Clement Chevalier, Marie-Josee Cros, Sandrine Boisset, Pierre Fechter, Celine Noirot, Jacques Schrenzel, Patrice Francois, Francois Vandenesch, Christine Gaspin, Pascale Romby2009-09-28Oxford University Press<![CDATA[The elimination of primer-dimer accumulation in PCR]]>
http://nar.oxfordjournals.org/cgi/content/short/25/16/3235?rss=1&ssource=mfc
Aug 15, 1997; 25:3235-3241 Articles]]>J Brownie, S Shawcross, J Theaker, D Whitcombe, R Ferrie, C Newton, S Little1997-08-1510.1093/nar/25.16.3235Oxford University Press<![CDATA[NCBI GEO: archive for high-throughput functional genomic data]]>
http://nar.oxfordjournals.org/cgi/content/short/37/suppl_1/D885?rss=1&ssource=mfc
Jan 1, 2009; 37:885-890 Articles]]>Tanya Barrett, Dennis B. Troup, Stephen E. Wilhite, Pierre Ledoux, Dmitry Rudnev, Carlos Evangelista, Irene F. Kim, Alexandra Soboleva, Maxim Tomashevsky, Kimberly A. Marshall, Katherine H. Phillippy, Patti M. Sherman, Rolf N. Muertter, Ron Edgar2009-01-01Oxford University Press<![CDATA[COBRA: a sensitive and quantitative DNA methylation assay]]>
http://nar.oxfordjournals.org/cgi/content/short/25/12/2532?rss=1&ssource=mfc
Jun 15, 1997; 25:2532-2534 Articles]]>Z Xiong, PW Laird1997-06-1510.1093/nar/25.12.2532Oxford University Press<![CDATA[The microRNA.org resource: targets and expression]]>
http://nar.oxfordjournals.org/cgi/content/short/36/suppl_1/D149?rss=1&ssource=mfc
Jan 11, 2008; 36:149-153 Articles]]>Doron Betel, Manda Wilson, Aaron Gabow, Debora S. Marks, Chris Sander2008-01-11Oxford University Press<![CDATA[The COG database: a tool for genome-scale analysis of protein functions and evolution]]>
http://nar.oxfordjournals.org/cgi/content/short/28/1/33?rss=1&ssource=mfc
Jan 1, 2000; 28:33-36 Articles]]>Roman L. Tatusov, Michael Y. Galperin, Darren A. Natale, Eugene V. Koonin2000-01-0110.1093/nar/28.1.33Oxford University Press<![CDATA[Nucleic Acids Research annual Database Issue and the NAR online Molecular Biology Database Collection in 2009]]>
http://nar.oxfordjournals.org/cgi/content/short/37/suppl_1/D1?rss=1&ssource=mfc
Jan 1, 2009; 37:1-4 Articles]]>Michael Y. Galperin, Guy R. Cochrane2009-01-01Oxford University Press<![CDATA[An efficient procedure for genotyping single nucleotide polymorphisms]]>
http://nar.oxfordjournals.org/cgi/content/short/29/17/e88?rss=1&ssource=mfc
Sep 1, 2001; 29:88-88 NAR Methods Online]]>Shu Ye, Sahar Dhillon, Xiayi Ke, Andrew R. Collins, Ian N. M. Day2001-09-0110.1093/nar/29.17.e88Oxford University Press<![CDATA[A simple and efficient method for PCR amplifiable DNA extraction from ancient bones]]>
http://nar.oxfordjournals.org/cgi/content/short/28/12/e67?rss=1&ssource=mfc
Jun 15, 2000; 28:67-67 NAR Methods Online]]>Tibor Kalmar, Csanad Z. Bachrati, Antonia Marcsik, Istvan Rasko2000-06-1510.1093/nar/28.12.e67Oxford University Press<![CDATA[Mesenchymal stem cell secretes microparticles enriched in pre-microRNAs]]>
http://nar.oxfordjournals.org/cgi/content/short/gkp857v1?rss=1&ssource=mfc
Oct 22, 2009; 0:8571-857 RNA]]>Tian Sheng Chen, Ruenn Chai Lai, May May Lee, Andre Boon Hwa Choo, Chuen Neng Lee, Sai Kiang Lim2009-10-22Oxford University Press<![CDATA[Alanine-stretch scanning mutagenesis: a simple and efficient method to probe protein structure and function]]>
http://nar.oxfordjournals.org/cgi/content/short/25/2/447?rss=1&ssource=mfc
Jan 15, 1997; 25:447-448 Articles]]>F Lefevre, MH Remy, JM Masson1997-01-1510.1093/nar/25.2.447Oxford University Press<![CDATA[A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes]]>
http://nar.oxfordjournals.org/cgi/content/short/31/7/1805?rss=1&ssource=mfc
Apr 1, 2003; 31:1805-1812 Articles]]>Richard J. Roberts, Marlene Belfort, Timothy Bestor, Ashok S. Bhagwat, Thomas A. Bickle, Jurate Bitinaite, Robert M. Blumenthal, Sergey Kh. Degtyarev, David T. F. Dryden, Kevin Dybvig, Keith Firman, Elizaveta S. Gromova, Richard I. Gumport, Stephen E. Halford, Stanley Hattman, Joseph Heitman, David P. Hornby, Arvydas Janulaitis, Albert Jeltsch, Jytte Josephsen, Antal Kiss, Todd R. Klaenhammer, Ichizo Kobayashi, Huimin Kong, Detlev H. Kruger, Sanford Lacks, Martin G. Marinus, Michiko Miyahara, Richard D. Morgan, Noreen E. Murray, Valakunja Nagaraja, Andrzej Piekarowicz, Alfred Pingoud, Elisabeth Raleigh, Desirazu N. Rao, Norbert Reich, Vladimir E. Repin, Eric U. Selker, Pang-Chui Shaw, Daniel C. Stein, Barry L. Stoddard, Waclaw Szybalski, Thomas A. Trautner, James L. Van Etten, Jorge M. B. Vitor, Geoffrey G. Wilson, Shuang-yong Xu2003-04-0110.1093/nar/gkg274Oxford University Press<![CDATA[Gene Expression Omnibus: NCBI gene expression and hybridization array data repository]]>
http://nar.oxfordjournals.org/cgi/content/short/30/1/207?rss=1&ssource=mfc
Jan 1, 2002; 30:207-210 Articles]]>Ron Edgar, Michael Domrachev, Alex E. Lash2002-01-0110.1093/nar/30.1.207Oxford University Press<![CDATA[Real-time PCR in virology]]>
http://nar.oxfordjournals.org/cgi/content/short/30/6/1292?rss=1&ssource=mfc
Mar 15, 2002; 30:1292-1305 Articles]]>Ian M. Mackay, Katherine E. Arden, Andreas Nitsche2002-03-1510.1093/nar/30.6.1292Oxford University Press<![CDATA[Current tools for the identification of miRNA genes and their targets]]>
http://nar.oxfordjournals.org/cgi/content/short/37/8/2419?rss=1&ssource=mfc
May 1, 2009; 37:2419-2433 Survey and Summary]]>N. D. Mendes, A. T. Freitas, M.-F. Sagot2009-05-01Oxford University Press<![CDATA[Betaine improves the PCR amplification of GC-rich DNA sequences]]>
http://nar.oxfordjournals.org/cgi/content/short/25/19/3957?rss=1&ssource=mfc
Oct 1, 1997; 25:3957-3958 Articles]]>W Henke, K Herdel, K Jung, D Schnorr, SA Loening1997-10-0110.1093/nar/25.19.3957Oxford University Press<![CDATA[Darwinian evolution in the light of genomics]]>
http://nar.oxfordjournals.org/cgi/content/short/37/4/1011?rss=1&ssource=mfc
Mar 1, 2009; 37:1011-1034 Survey and Summary]]>Eugene V. Koonin2009-03-01Oxford University Press<![CDATA[Predicting eukaryotic transcriptional cooperativity by Bayesian network integration of genome-wide data]]>
http://nar.oxfordjournals.org/cgi/content/short/37/18/5943?rss=1&ssource=mfc
Oct 1, 2009; 37:5943-5958 Computational Biology]]>Yong Wang, Xiang-Sun Zhang, Yu Xia2009-10-01Oxford University Press<![CDATA[A simple and reliable 5'-RACE approach]]>
http://nar.oxfordjournals.org/cgi/content/short/28/22/e96?rss=1&ssource=mfc
Nov 15, 2000; 28:96-96 NAR Methods Online]]>Guido Schramm, Iris Bruchhaus, Thomas Roeder2000-11-1510.1093/nar/28.22.e96Oxford University Press<![CDATA[Extracting transcription factor targets from ChIP-Seq data]]>
http://nar.oxfordjournals.org/cgi/content/short/37/17/e113?rss=1&ssource=mfc
Sep 1, 2009; 37:113-113 Methods Online]]>Geetu Tuteja, Peter White, Jonathan Schug, Klaus H. Kaestner2009-09-01Oxford University Press<![CDATA[Transcriptome analysis by strand-specific sequencing of complementary DNA]]>
http://nar.oxfordjournals.org/cgi/content/short/37/18/e123?rss=1&ssource=mfc
Oct 1, 2009; 37:123-123 Methods Online]]>Dmitri Parkhomchuk, Tatiana Borodina, Vyacheslav Amstislavskiy, Maria Banaru, Linda Hallen, Sylvia Krobitsch, Hans Lehrach, Alexey Soldatov2009-10-01Oxford University Press<![CDATA[OPTIMIZER: a web server for optimizing the codon usage of DNA sequences]]>
http://nar.oxfordjournals.org/cgi/content/short/gkm219v1?rss=1&ssource=mfc
Jul 13, 2007; 35:126-131 Articles]]>Pere Puigbo, Eduard Guzman, Antoni Romeu, Santiago Garcia-Vallve2007-07-13Oxford University Press<![CDATA[In vivo methylation of mtDNA reveals the dynamics of protein-mtDNA interactions]]>
http://nar.oxfordjournals.org/cgi/content/short/gkp727v1?rss=1&ssource=mfc
Nov 1, 2009; 37:6701-6715 Gene Regulation, Chromatin and Epigenetics]]>Adriana P. Rebelo, Sion L. Williams, Carlos T. Moraes2009-11-01Oxford University Press<![CDATA[Combinatorial network of primary and secondary microRNA-driven regulatory mechanisms]]>
http://nar.oxfordjournals.org/cgi/content/short/37/18/5969?rss=1&ssource=mfc
Oct 1, 2009; 37:5969-5980 Computational Biology]]>Kang Tu, Hui Yu, You-Jia Hua, Yuan-Yuan Li, Lei Liu, Lu Xie, Yi-Xue Li2009-10-01Oxford University Press<![CDATA[The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases]]>
http://nar.oxfordjournals.org/cgi/content/short/36/suppl_1/D623?rss=1&ssource=mfc
Jan 11, 2008; 36:623-631 Articles]]>Ron Caspi, Hartmut Foerster, Carol A. Fulcher, Pallavi Kaipa, Markus Krummenacker, Mario Latendresse, Suzanne Paley, Seung Y. Rhee, Alexander G. Shearer, Christophe Tissier, Thomas C. Walk, Peifen Zhang, Peter D. Karp2008-01-11Oxford University Press<![CDATA[The cucumovirus 2b gene drives selection of inter-viral recombinants affecting the crossover site, the acceptor RNA and the rate of selection]]>
http://nar.oxfordjournals.org/cgi/content/short/36/4/1057?rss=1&ssource=mfc
Mar 27, 2008; 36:1057-1071 RNA]]>Bu-Jun Shi, Robert H. Symons, Peter Palukaitis2008-03-27Oxford University Press<![CDATA[miRGen 2.0: a database of microRNA genomic information and regulation]]>
http://nar.oxfordjournals.org/cgi/content/short/gkp888v1?rss=1&ssource=mfc
Oct 22, 2009; 0:8881-888 Database Issue]]>Panagiotis Alexiou, Thanasis Vergoulis, Martin Gleditzsch, George Prekas, Theodore Dalamagas, Molly Megraw, Ivo Grosse, Timos Sellis, Artemis G. Hatzigeorgiou2009-10-22Oxford University Press<![CDATA[TRANSFAC: a database on transcription factors and their DNA binding sites]]>
http://nar.oxfordjournals.org/cgi/content/short/24/1/238?rss=1&ssource=mfc
Jan 1, 1996; 24:238-241 Articles]]>E Wingender, P Dietze, H Karas, R Knuppel1996-01-0110.1093/nar/24.1.238Oxford University Press<![CDATA[Cancer siRNA therapy by tumor selective delivery with ligand-targeted sterically stabilized nanoparticle]]>
http://nar.oxfordjournals.org/cgi/content/short/32/19/e149?rss=1&ssource=mfc
Nov 1, 2004; 32:149-149 Methods Online]]>Raymond M. Schiffelers, Aslam Ansari, Jun Xu, Qin Zhou, Qingquan Tang, Gert Storm, Grietje Molema, Patrick Y. Lu, Puthupparampil V. Scaria, Martin C. Woodle2004-11-0110.1093/nar/gnh140Oxford University Press<![CDATA[Universal function-specificity of codon usage]]>
http://nar.oxfordjournals.org/cgi/content/short/gkp792v1?rss=1&ssource=mfc
Sep 22, 2009; 0:7921-792 Computational Biology]]>Hamed Shateri Najafabadi, Hani Goodarzi, Reza Salavati2009-09-22Oxford University Press